RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 DCAF8L2P0C7V8 631 aa17.67■□□□□ 0.42
GTF3C1-202ENST00000561623 SUPT5HO00267 1087 aaKnown RBP16.72■□□□□ 0.27
GTF3C1-202ENST00000561623 EHMT2Q96KQ7 1210 aa16.36■□□□□ 0.21
GTF3C1-202ENST00000561623 SHROOM4Q9ULL8 1493 aa16.33■□□□□ 0.2
GTF3C1-202ENST00000561623 PELP1Q8IZL8 1130 aaKnown RBP16.27■□□□□ 0.2
GTF3C1-202ENST00000561623 PCGF6Q9BYE7 350 aa16.11■□□□□ 0.17
GTF3C1-202ENST00000561623 NISCHQ9Y2I1 1504 aa16.03■□□□□ 0.16
GTF3C1-202ENST00000561623 FAM9AQ8IZU1 332 aaPredicted RBP15.89■□□□□ 0.13
GTF3C1-202ENST00000561623 TTBK1Q5TCY1 1321 aaPredicted RBP15.87■□□□□ 0.13
GTF3C1-202ENST00000561623 CENPBP07199 599 aaPredicted RBP15.82■□□□□ 0.12
GTF3C1-202ENST00000561623 ERICH6Q7L0X2 663 aa15.76■□□□□ 0.11
GTF3C1-202ENST00000561623 APLP2Q06481 763 aa15.72■□□□□ 0.11
GTF3C1-202ENST00000561623 ZEB1P37275 1124 aaPredicted RBP15.66■□□□□ 0.1
GTF3C1-202ENST00000561623 MYT1Q01538 1121 aa15.65■□□□□ 0.1
GTF3C1-202ENST00000561623 CCER1Q8TC90 406 aaPredicted RBP15.62■□□□□ 0.09
GTF3C1-202ENST00000561623 YTHDC1Q96MU7 727 aaKnown RBP15.62■□□□□ 0.09
GTF3C1-202ENST00000561623 RANGAP1P46060 587 aaPredicted RBP15.43■□□□□ 0.06
GTF3C1-202ENST00000561623 HRCP23327 699 aa15.4■□□□□ 0.06
GTF3C1-202ENST00000561623 MYT1LQ9UL68 1186 aa15.39■□□□□ 0.05
GTF3C1-202ENST00000561623 NEFLP07196 543 aa15.35■□□□□ 0.05
GTF3C1-202ENST00000561623 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
GTF3C1-202ENST00000561623 PPARGC1BQ86YN6 1023 aaKnown RBP15.33■□□□□ 0.05
GTF3C1-202ENST00000561623 ATP1B4Q9UN42 357 aaPredicted RBP15.33■□□□□ 0.04
GTF3C1-202ENST00000561623 TRIM26Q12899 539 aaPredicted RBP15.22■□□□□ 0.03
GTF3C1-202ENST00000561623 CHIC1Q5VXU3 224 aa15.19■□□□□ 0.02
GTF3C1-202ENST00000561623 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
GTF3C1-202ENST00000561623 LOC105371045A0A1W2PR82 267 aa15.03■□□□□ -0
GTF3C1-202ENST00000561623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.92□□□□□ -0.02
GTF3C1-202ENST00000561623 HNRNPUL2Q1KMD3 747 aaKnown RBP14.92□□□□□ -0.02
GTF3C1-202ENST00000561623 DAXXQ9UER7 740 aaPredicted RBP14.89□□□□□ -0.03
GTF3C1-202ENST00000561623 DIEXFQ68CQ4 756 aaKnown RBP14.89□□□□□ -0.03
GTF3C1-202ENST00000561623 ITGAEP38570 1179 aa14.85□□□□□ -0.03
GTF3C1-202ENST00000561623 GTF3C3Q9Y5Q9 886 aa14.85□□□□□ -0.03
GTF3C1-202ENST00000561623 POLR3GLQ9BT43 218 aa14.8□□□□□ -0.04
GTF3C1-202ENST00000561623 CNGB1Q14028 1251 aaPredicted RBP14.79□□□□□ -0.04
GTF3C1-202ENST00000561623 RTL5Q5HYW3 569 aaPredicted RBP14.74□□□□□ -0.05
GTF3C1-202ENST00000561623 BCANQ96GW7 911 aa14.74□□□□□ -0.05
GTF3C1-202ENST00000561623 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
GTF3C1-202ENST00000561623 SLC4A1APQ9BWU0 796 aaKnown RBP14.61□□□□□ -0.07
GTF3C1-202ENST00000561623 ZNF316A6NFI3 1004 aaPredicted RBP14.6□□□□□ -0.07
GTF3C1-202ENST00000561623 ACIN1Q9UKV3 1341 aaKnown RBP14.57□□□□□ -0.08
GTF3C1-202ENST00000561623 FBLN2P98095 1184 aa14.52□□□□□ -0.08
GTF3C1-202ENST00000561623 CLSPNQ9HAW4 1339 aa14.5□□□□□ -0.09
GTF3C1-202ENST00000561623 CDK11AQ9UQ88 783 aaPredicted RBP14.46□□□□□ -0.09
GTF3C1-202ENST00000561623 NEUROD1Q13562 356 aa14.42□□□□□ -0.1
GTF3C1-202ENST00000561623 FAM50AQ14320 339 aaKnown RBP14.35□□□□□ -0.11
GTF3C1-202ENST00000561623 ANP32CO43423 234 aa14.35□□□□□ -0.11
GTF3C1-202ENST00000561623 SLC24A1O60721 1099 aa14.32□□□□□ -0.12
GTF3C1-202ENST00000561623 ESF1Q9H501 851 aaKnown RBP14.32□□□□□ -0.12
GTF3C1-202ENST00000561623 PABPN1Q86U42 306 aaKnown RBP eCLIP14.31□□□□□ -0.12
GTF3C1-202ENST00000561623 SCAF1Q9H7N4 1312 aaKnown RBP14.29□□□□□ -0.12
GTF3C1-202ENST00000561623 EIF5BO60841 1220 aaKnown RBP14.26□□□□□ -0.13
GTF3C1-202ENST00000561623 TRIM52Q96A61 297 aa14.25□□□□□ -0.13
GTF3C1-202ENST00000561623 NPM2Q86SE8 214 aaKnown RBP14.23□□□□□ -0.13
GTF3C1-202ENST00000561623 FKBP8Q14318 412 aa14.23□□□□□ -0.13
GTF3C1-202ENST00000561623 ANP32AP39687 249 aaKnown RBP14.22□□□□□ -0.13
GTF3C1-202ENST00000561623 ABCC9O60706 1549 aa14.22□□□□□ -0.13
GTF3C1-202ENST00000561623 ZNF326Q5BKZ1 582 aaKnown RBP14.19□□□□□ -0.14
GTF3C1-202ENST00000561623 A0A0G2JS52 829 aa14.18□□□□□ -0.14
GTF3C1-202ENST00000561623 BCL11AQ9H165 835 aa14.12□□□□□ -0.15
GTF3C1-202ENST00000561623 NBR1Q14596 966 aa14.11□□□□□ -0.15
GTF3C1-202ENST00000561623 TRHP20396 242 aaPredicted RBP14.1□□□□□ -0.15
GTF3C1-202ENST00000561623 AEBP2Q6ZN18 517 aaPredicted RBP14.1□□□□□ -0.15
GTF3C1-202ENST00000561623 NPM1P06748 294 aaKnown RBP eCLIP14.08□□□□□ -0.16
GTF3C1-202ENST00000561623 CANXP27824 592 aaKnown RBP14.06□□□□□ -0.16
GTF3C1-202ENST00000561623 SENP3Q9H4L4 574 aaPredicted RBP14.05□□□□□ -0.16
GTF3C1-202ENST00000561623 HNRNPUQ00839 825 aaKnown RBP eCLIP14□□□□□ -0.17
GTF3C1-202ENST00000561623 STAG3Q9UJ98 1225 aa14□□□□□ -0.17
GTF3C1-202ENST00000561623 ZBTB47Q9UFB7 747 aaPredicted RBP14□□□□□ -0.17
GTF3C1-202ENST00000561623 DDX10Q13206 875 aaKnown RBP13.98□□□□□ -0.17
GTF3C1-202ENST00000561623 MIER1Q8N108 512 aa13.98□□□□□ -0.17
GTF3C1-202ENST00000561623 ARID3CA6NKF2 412 aa13.97□□□□□ -0.17
GTF3C1-202ENST00000561623 PLEKHG5O94827 1062 aa13.97□□□□□ -0.17
GTF3C1-202ENST00000561623 DCAF1Q9Y4B6 1507 aa13.97□□□□□ -0.17
GTF3C1-202ENST00000561623 IRX6P78412 446 aaPredicted RBP13.94□□□□□ -0.18
GTF3C1-202ENST00000561623 FAM9BQ8IZU0 186 aa13.94□□□□□ -0.18
GTF3C1-202ENST00000561623 ARXQ96QS3 562 aa13.93□□□□□ -0.18
GTF3C1-202ENST00000561623 GLIPR1L2Q4G1C9 344 aa13.92□□□□□ -0.18
GTF3C1-202ENST00000561623 P3H3Q8IVL6 736 aa13.89□□□□□ -0.19
GTF3C1-202ENST00000561623 ANP32EQ9BTT0 268 aa13.88□□□□□ -0.19
GTF3C1-202ENST00000561623 SALL2Q9Y467 1007 aaPredicted RBP13.88□□□□□ -0.19
GTF3C1-202ENST00000561623 CCDC136Q96JN2 1154 aa13.87□□□□□ -0.19
GTF3C1-202ENST00000561623 ANP32BQ92688 251 aaKnown RBP13.87□□□□□ -0.19
GTF3C1-202ENST00000561623 CSRNP3Q8WYN3 585 aa13.85□□□□□ -0.19
GTF3C1-202ENST00000561623 HSP90AA1P07900 732 aaKnown RBP13.83□□□□□ -0.2
GTF3C1-202ENST00000561623 C14orf37Q86TY3 774 aa13.83□□□□□ -0.2
GTF3C1-202ENST00000561623 TONSLQ96HA7 1378 aa13.81□□□□□ -0.2
GTF3C1-202ENST00000561623 ARID4BQ4LE39 1312 aaPredicted RBP13.81□□□□□ -0.2
GTF3C1-202ENST00000561623 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
GTF3C1-202ENST00000561623 CHGAP10645 457 aaKnown RBP13.79□□□□□ -0.2
GTF3C1-202ENST00000561623 HIRIP3Q9BW71 556 aaPredicted RBP13.79□□□□□ -0.2
GTF3C1-202ENST00000561623 UPF2Q9HAU5 1272 aaKnown RBP13.78□□□□□ -0.2
GTF3C1-202ENST00000561623 MYO15BQ96JP2 1530 aa13.74□□□□□ -0.21
GTF3C1-202ENST00000561623 ZBTB7CA1YPR0 619 aa13.74□□□□□ -0.21
GTF3C1-202ENST00000561623 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
GTF3C1-202ENST00000561623 NEFMP07197 916 aa13.73□□□□□ -0.21
GTF3C1-202ENST00000561623 MRS2Q9HD23 443 aa13.73□□□□□ -0.21
GTF3C1-202ENST00000561623 ZNF777Q9ULD5 760 aaPredicted RBP13.71□□□□□ -0.21
GTF3C1-202ENST00000561623 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
GTF3C1-202ENST00000561623 SENP3-EIF4A1A0A087X0R7 540 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms