RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 SIGLEC1Q9BZZ2 1709 aa11.44□□□□□ -0.58
SPG11-224ENST00000561268 FAM9AQ8IZU1 332 aaPredicted RBP11.43□□□□□ -0.58
SPG11-224ENST00000561268 FYCO1Q9BQS8 1478 aa11.43□□□□□ -0.58
SPG11-224ENST00000561268 CCDC18Q5T9S5 1454 aa11.42□□□□□ -0.58
SPG11-224ENST00000561268 FANCAO15360 1455 aa11.41□□□□□ -0.58
SPG11-224ENST00000561268 KDM4FA0A1W2PPD8 638 aa11.41□□□□□ -0.58
SPG11-224ENST00000561268 CASKIN1Q8WXD9 1431 aa11.41□□□□□ -0.58
SPG11-224ENST00000561268 KDM5CP41229 1560 aa11.41□□□□□ -0.58
SPG11-224ENST00000561268 ITSN2Q9NZM3 1697 aa11.4□□□□□ -0.58
SPG11-224ENST00000561268 TROQ12816 1431 aaPredicted RBP11.4□□□□□ -0.58
SPG11-224ENST00000561268 KCNH8Q96L42 1107 aa11.37□□□□□ -0.59
SPG11-224ENST00000561268 PLCH2O75038 1416 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 POGZQ7Z3K3 1410 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 AKNAQ7Z591 1439 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 ABCC1P33527 1531 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 MADDQ8WXG6 1647 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 ARID3CA6NKF2 412 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 DENND4BO75064 1496 aaPredicted RBP11.36□□□□□ -0.59
SPG11-224ENST00000561268 MAGI2Q86UL8 1455 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 HECW2Q9P2P5 1572 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 REREQ9P2R6 1566 aa11.36□□□□□ -0.59
SPG11-224ENST00000561268 ZFYVE16Q7Z3T8 1539 aa11.35□□□□□ -0.59
SPG11-224ENST00000561268 FER1L4A9Z1Z3 1794 aa11.35□□□□□ -0.59
SPG11-224ENST00000561268 UBTFP17480 764 aaKnown RBP11.34□□□□□ -0.59
SPG11-224ENST00000561268 CLIP1P30622 1438 aa11.34□□□□□ -0.59
SPG11-224ENST00000561268 RIMS1Q86UR5 1692 aaKnown RBP11.33□□□□□ -0.6
SPG11-224ENST00000561268 ABCA6Q8N139 1617 aa11.32□□□□□ -0.6
SPG11-224ENST00000561268 PLEKHD1A6NEE1 506 aa11.32□□□□□ -0.6
SPG11-224ENST00000561268 DIP2CQ9Y2E4 1556 aa11.32□□□□□ -0.6
SPG11-224ENST00000561268 KIDINS220Q9ULH0 1771 aa11.31□□□□□ -0.6
SPG11-224ENST00000561268 SAMD9LQ8IVG5 1584 aa11.31□□□□□ -0.6
SPG11-224ENST00000561268 ZNF518AQ6AHZ1 1483 aa11.31□□□□□ -0.6
SPG11-224ENST00000561268 ARHGAP5Q13017 1502 aa11.3□□□□□ -0.6
SPG11-224ENST00000561268 EHBP1L1Q8N3D4 1523 aa11.3□□□□□ -0.6
SPG11-224ENST00000561268 RANGAP1P46060 587 aaPredicted RBP11.3□□□□□ -0.6
SPG11-224ENST00000561268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.29□□□□□ -0.6
SPG11-224ENST00000561268 TIAM1Q13009 1591 aa11.28□□□□□ -0.6
SPG11-224ENST00000561268 INO80Q9ULG1 1556 aaPredicted RBP11.28□□□□□ -0.6
SPG11-224ENST00000561268 YEATS2Q9ULM3 1422 aa11.28□□□□□ -0.6
SPG11-224ENST00000561268 ARHGEF12Q9NZN5 1544 aa11.28□□□□□ -0.6
SPG11-224ENST00000561268 CEP162Q5TB80 1403 aa11.27□□□□□ -0.6
SPG11-224ENST00000561268 PTPRMP28827 1452 aa11.27□□□□□ -0.6
SPG11-224ENST00000561268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.27□□□□□ -0.61
SPG11-224ENST00000561268 HNRNPUL2Q1KMD3 747 aaKnown RBP11.27□□□□□ -0.61
SPG11-224ENST00000561268 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
SPG11-224ENST00000561268 RAPGEF3O95398 923 aa11.26□□□□□ -0.61
SPG11-224ENST00000561268 MLH3Q9UHC1 1453 aa11.25□□□□□ -0.61
SPG11-224ENST00000561268 PLXNC1O60486 1568 aa11.25□□□□□ -0.61
SPG11-224ENST00000561268 SUPT6HQ7KZ85 1726 aaKnown RBP11.25□□□□□ -0.61
SPG11-224ENST00000561268 C9orf84Q5VXU9 1444 aa11.25□□□□□ -0.61
SPG11-224ENST00000561268 AGLP35573 1532 aa11.25□□□□□ -0.61
SPG11-224ENST00000561268 CDK11AQ9UQ88 783 aaPredicted RBP11.24□□□□□ -0.61
SPG11-224ENST00000561268 SYCP2Q9BX26 1530 aa11.24□□□□□ -0.61
SPG11-224ENST00000561268 MROH2AA6NES4 1674 aa11.24□□□□□ -0.61
SPG11-224ENST00000561268 ADGBQ8N7X0 1667 aa11.24□□□□□ -0.61
SPG11-224ENST00000561268 GPATCH8Q9UKJ3 1502 aaKnown RBP11.23□□□□□ -0.61
SPG11-224ENST00000561268 PREX1Q8TCU6 1659 aa11.23□□□□□ -0.61
SPG11-224ENST00000561268 ATP10AO60312 1499 aa11.22□□□□□ -0.61
SPG11-224ENST00000561268 EHMT2Q96KQ7 1210 aa11.22□□□□□ -0.61
SPG11-224ENST00000561268 C3P01024 1663 aa11.21□□□□□ -0.61
SPG11-224ENST00000561268 MAP3K1Q13233 1512 aa11.2□□□□□ -0.62
SPG11-224ENST00000561268 LMTK3Q96Q04 1460 aa11.2□□□□□ -0.62
SPG11-224ENST00000561268 NCBP3Q53F19 620 aaKnown RBP11.2□□□□□ -0.62
SPG11-224ENST00000561268 ATP7AQ04656 1500 aa11.19□□□□□ -0.62
SPG11-224ENST00000561268 SETD1BQ9UPS6 1966 aaKnown RBP11.19□□□□□ -0.62
SPG11-224ENST00000561268 PLEKHH2Q8IVE3 1493 aa11.19□□□□□ -0.62
SPG11-224ENST00000561268 TRAPPC8Q9Y2L5 1435 aa11.19□□□□□ -0.62
SPG11-224ENST00000561268 EFCAB2Q5VUJ9 269 aa11.19□□□□□ -0.62
SPG11-224ENST00000561268 KIAA1107Q9UPP5 1409 aa11.18□□□□□ -0.62
SPG11-224ENST00000561268 VPS8Q8N3P4 1428 aa11.18□□□□□ -0.62
SPG11-224ENST00000561268 ARHGEF5Q12774 1597 aa11.16□□□□□ -0.62
SPG11-224ENST00000561268 CROCC2H7BZ55 1655 aa11.16□□□□□ -0.62
SPG11-224ENST00000561268 ZNF142P52746 1687 aaPredicted RBP11.15□□□□□ -0.62
SPG11-224ENST00000561268 NCOA2Q15596 1464 aa11.14□□□□□ -0.63
SPG11-224ENST00000561268 MBD5Q9P267 1494 aa11.14□□□□□ -0.63
SPG11-224ENST00000561268 MTUS2Q5JR59 1369 aa11.14□□□□□ -0.63
SPG11-224ENST00000561268 MAST1Q9Y2H9 1570 aa11.13□□□□□ -0.63
SPG11-224ENST00000561268 ATP1B4Q9UN42 357 aaPredicted RBP11.13□□□□□ -0.63
SPG11-224ENST00000561268 FAM135AQ9P2D6 1515 aa11.13□□□□□ -0.63
SPG11-224ENST00000561268 LRRC9Q6ZRR7 1453 aa11.12□□□□□ -0.63
SPG11-224ENST00000561268 STRCQ7RTU9 1775 aa11.12□□□□□ -0.63
SPG11-224ENST00000561268 CAMSAP2Q08AD1 1489 aa11.12□□□□□ -0.63
SPG11-224ENST00000561268 CLTCQ00610 1675 aaKnown RBP11.11□□□□□ -0.63
SPG11-224ENST00000561268 RNF17Q9BXT8 1623 aaKnown RBP11.1□□□□□ -0.63
SPG11-224ENST00000561268 CCNB3Q8WWL7 1395 aa11.1□□□□□ -0.63
SPG11-224ENST00000561268 EIF2AK4Q9P2K8 1649 aaKnown RBP11.09□□□□□ -0.63
SPG11-224ENST00000561268 CCDC141Q6ZP82 1450 aa11.09□□□□□ -0.63
SPG11-224ENST00000561268 AFAP1Q8N556 730 aa11.09□□□□□ -0.63
SPG11-224ENST00000561268 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
SPG11-224ENST00000561268 RTEL1-TNFRSF6BF6WH68 1400 aa11.09□□□□□ -0.63
SPG11-224ENST00000561268 ZC3H13Q5T200 1668 aaKnown RBP11.08□□□□□ -0.64
SPG11-224ENST00000561268 A2MP01023 1474 aa11.07□□□□□ -0.64
SPG11-224ENST00000561268 CNTLNQ9NXG0 1405 aa11.07□□□□□ -0.64
SPG11-224ENST00000561268 NPM3O75607 178 aaKnown RBP11.06□□□□□ -0.64
SPG11-224ENST00000561268 POTEHQ6S545 545 aa11.06□□□□□ -0.64
SPG11-224ENST00000561268 ARID4BQ4LE39 1312 aaPredicted RBP11.06□□□□□ -0.64
SPG11-224ENST00000561268 MROH1Q8NDA8 1641 aa11.05□□□□□ -0.64
SPG11-224ENST00000561268 DNMT1P26358 1616 aaKnown RBP11.04□□□□□ -0.64
SPG11-224ENST00000561268 NPATQ14207 1427 aa11.03□□□□□ -0.64
SPG11-224ENST00000561268 MIA2Q96PC5 1412 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms