RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 AKNAQ7Z591 1439 aa14.21□□□□□ -0.13
RTF1-206ENST00000560447 MIA2Q96PC5 1412 aa14.21□□□□□ -0.13
RTF1-206ENST00000560447 HFM1A2PYH4 1435 aa14.2□□□□□ -0.14
RTF1-206ENST00000560447 GCC2Q8IWJ2 1684 aa14.19□□□□□ -0.14
RTF1-206ENST00000560447 NUP160Q12769 1436 aa14.18□□□□□ -0.14
RTF1-206ENST00000560447 FAM50AQ14320 339 aaKnown RBP14.18□□□□□ -0.14
RTF1-206ENST00000560447 RBM42Q9BTD8 480 aaKnown RBP14.18□□□□□ -0.14
RTF1-206ENST00000560447 MAGI3Q5TCQ9 1506 aa14.18□□□□□ -0.14
RTF1-206ENST00000560447 CEP170Q5SW79 1584 aa14.17□□□□□ -0.14
RTF1-206ENST00000560447 ZBTB12Q9Y330 459 aaPredicted RBP14.15□□□□□ -0.14
RTF1-206ENST00000560447 ADCY10Q96PN6 1610 aa14.14□□□□□ -0.15
RTF1-206ENST00000560447 CARMIL2Q6F5E8 1435 aa14.14□□□□□ -0.15
RTF1-206ENST00000560447 ITGAEP38570 1179 aa14.13□□□□□ -0.15
RTF1-206ENST00000560447 ITSN2Q9NZM3 1697 aa14.12□□□□□ -0.15
RTF1-206ENST00000560447 UACAQ9BZF9 1416 aa14.12□□□□□ -0.15
RTF1-206ENST00000560447 NUP153P49790 1475 aaKnown RBP14.11□□□□□ -0.15
RTF1-206ENST00000560447 CDK13Q14004 1512 aaKnown RBP14.1□□□□□ -0.15
RTF1-206ENST00000560447 NAIPQ13075 1403 aa14.09□□□□□ -0.15
RTF1-206ENST00000560447 CDK11AQ9UQ88 783 aaPredicted RBP14.09□□□□□ -0.15
RTF1-206ENST00000560447 CHMP7Q8WUX9 453 aaPredicted RBP14.08□□□□□ -0.16
RTF1-206ENST00000560447 DNMT1P26358 1616 aaKnown RBP14.08□□□□□ -0.16
RTF1-206ENST00000560447 CENPBP07199 599 aaPredicted RBP14.07□□□□□ -0.16
RTF1-206ENST00000560447 PTPRKQ15262 1439 aa14.07□□□□□ -0.16
RTF1-206ENST00000560447 ROCK1Q13464 1354 aa14.06□□□□□ -0.16
RTF1-206ENST00000560447 TROQ12816 1431 aaPredicted RBP14.06□□□□□ -0.16
RTF1-206ENST00000560447 ABCA8O94911 1581 aa14.05□□□□□ -0.16
RTF1-206ENST00000560447 ADGBQ8N7X0 1667 aa14.02□□□□□ -0.16
RTF1-206ENST00000560447 POTEHQ6S545 545 aa14.01□□□□□ -0.17
RTF1-206ENST00000560447 SHROOM2Q13796 1616 aa14□□□□□ -0.17
RTF1-206ENST00000560447 CROCC2H7BZ55 1655 aa13.99□□□□□ -0.17
RTF1-206ENST00000560447 JPH4Q96JJ6 628 aa13.99□□□□□ -0.17
RTF1-206ENST00000560447 DAPK1P53355 1430 aa13.98□□□□□ -0.17
RTF1-206ENST00000560447 CHD1O14646 1710 aa13.98□□□□□ -0.17
RTF1-206ENST00000560447 KIF14Q15058 1648 aa13.97□□□□□ -0.17
RTF1-206ENST00000560447 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
RTF1-206ENST00000560447 ADGRL2O95490 1459 aa13.96□□□□□ -0.17
RTF1-206ENST00000560447 PLB1Q6P1J6 1458 aa13.96□□□□□ -0.17
RTF1-206ENST00000560447 CDC42BPAQ5VT25 1732 aa13.94□□□□□ -0.18
RTF1-206ENST00000560447 CAMSAP2Q08AD1 1489 aa13.93□□□□□ -0.18
RTF1-206ENST00000560447 ABCC5O15440 1437 aa13.93□□□□□ -0.18
RTF1-206ENST00000560447 PPP1R15AO75807 674 aaPredicted RBP13.93□□□□□ -0.18
RTF1-206ENST00000560447 GPATCH8Q9UKJ3 1502 aaKnown RBP13.93□□□□□ -0.18
RTF1-206ENST00000560447 TONSLQ96HA7 1378 aa13.93□□□□□ -0.18
RTF1-206ENST00000560447 SHANK2Q9UPX8 1470 aa13.93□□□□□ -0.18
RTF1-206ENST00000560447 MIER1Q8N108 512 aa13.92□□□□□ -0.18
RTF1-206ENST00000560447 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
RTF1-206ENST00000560447 ABCC10Q5T3U5 1492 aa13.91□□□□□ -0.18
RTF1-206ENST00000560447 PRG4Q92954 1404 aaPredicted RBP13.9□□□□□ -0.18
RTF1-206ENST00000560447 ATP10BO94823 1461 aa13.9□□□□□ -0.18
RTF1-206ENST00000560447 ARHGEF5Q12774 1597 aa13.89□□□□□ -0.19
RTF1-206ENST00000560447 FBLN2P98095 1184 aa13.89□□□□□ -0.19
RTF1-206ENST00000560447 SIN3AQ96ST3 1273 aa13.89□□□□□ -0.19
RTF1-206ENST00000560447 KDM6BO15054 1643 aa13.89□□□□□ -0.19
RTF1-206ENST00000560447 MKRN4PQ13434 485 aaPredicted RBP13.87□□□□□ -0.19
RTF1-206ENST00000560447 PTPRGP23470 1445 aa13.87□□□□□ -0.19
RTF1-206ENST00000560447 KDM5BQ9UGL1 1544 aa13.86□□□□□ -0.19
RTF1-206ENST00000560447 PLEKHD1A6NEE1 506 aa13.86□□□□□ -0.19
RTF1-206ENST00000560447 NEUROD1Q13562 356 aa13.86□□□□□ -0.19
RTF1-206ENST00000560447 DENND4BO75064 1496 aaPredicted RBP13.86□□□□□ -0.19
RTF1-206ENST00000560447 PREX2Q70Z35 1606 aa13.86□□□□□ -0.19
RTF1-206ENST00000560447 CFDP1Q9UEE9 299 aaPredicted RBP13.85□□□□□ -0.19
RTF1-206ENST00000560447 NCOA1Q15788 1441 aa13.84□□□□□ -0.19
RTF1-206ENST00000560447 RRP7BPQ9NSQ0 103 aa13.84□□□□□ -0.19
RTF1-206ENST00000560447 ANKRD30AQ9BXX3 1397 aa13.83□□□□□ -0.19
RTF1-206ENST00000560447 CLASP1Q7Z460 1538 aa13.83□□□□□ -0.2
RTF1-206ENST00000560447 ABCC2Q92887 1545 aa13.83□□□□□ -0.2
RTF1-206ENST00000560447 KDM5DQ9BY66 1539 aa13.82□□□□□ -0.2
RTF1-206ENST00000560447 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
RTF1-206ENST00000560447 MPHOSPH9Q99550 1183 aa13.82□□□□□ -0.2
RTF1-206ENST00000560447 RPRD2Q5VT52 1461 aaKnown RBP13.81□□□□□ -0.2
RTF1-206ENST00000560447 MAST1Q9Y2H9 1570 aa13.81□□□□□ -0.2
RTF1-206ENST00000560447 CHIC2Q9UKJ5 165 aa13.81□□□□□ -0.2
RTF1-206ENST00000560447 UHRF1BP1LA0JNW5 1464 aa13.8□□□□□ -0.2
RTF1-206ENST00000560447 RSPH4AQ5TD94 716 aa13.8□□□□□ -0.2
RTF1-206ENST00000560447 CDC42BPBQ9Y5S2 1711 aa13.8□□□□□ -0.2
RTF1-206ENST00000560447 REM2Q8IYK8 340 aaPredicted RBP13.79□□□□□ -0.2
RTF1-206ENST00000560447 TRIM52Q96A61 297 aa13.79□□□□□ -0.2
RTF1-206ENST00000560447 ANKRD30BQ9BXX2 1392 aa13.79□□□□□ -0.2
RTF1-206ENST00000560447 ARID3CA6NKF2 412 aa13.78□□□□□ -0.2
RTF1-206ENST00000560447 PLEKHH2Q8IVE3 1493 aa13.78□□□□□ -0.2
RTF1-206ENST00000560447 MYO5CQ9NQX4 1742 aa13.78□□□□□ -0.2
RTF1-206ENST00000560447 PZPP20742 1482 aa13.77□□□□□ -0.21
RTF1-206ENST00000560447 POLR1AO95602 1720 aaPredicted RBP13.76□□□□□ -0.21
RTF1-206ENST00000560447 ZNF644Q9H582 1327 aaPredicted RBP13.76□□□□□ -0.21
RTF1-206ENST00000560447 SPDYE2BA6NHP3 402 aa13.76□□□□□ -0.21
RTF1-206ENST00000560447 SPDYE6P0CI01 402 aa13.76□□□□□ -0.21
RTF1-206ENST00000560447 SPDYE2Q495Y8 402 aa13.76□□□□□ -0.21
RTF1-206ENST00000560447 SAMD9LQ8IVG5 1584 aa13.75□□□□□ -0.21
RTF1-206ENST00000560447 CCDC141Q6ZP82 1450 aa13.75□□□□□ -0.21
RTF1-206ENST00000560447 C9orf84Q5VXU9 1444 aa13.75□□□□□ -0.21
RTF1-206ENST00000560447 TEX14Q8IWB6 1497 aa13.74□□□□□ -0.21
RTF1-206ENST00000560447 ANKRD50Q9ULJ7 1429 aa13.74□□□□□ -0.21
RTF1-206ENST00000560447 KIAA1107Q9UPP5 1409 aa13.74□□□□□ -0.21
RTF1-206ENST00000560447 MBD5Q9P267 1494 aa13.74□□□□□ -0.21
RTF1-206ENST00000560447 PLXNC1O60486 1568 aa13.73□□□□□ -0.21
RTF1-206ENST00000560447 ARAP3Q8WWN8 1544 aa13.73□□□□□ -0.21
RTF1-206ENST00000560447 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.71□□□□□ -0.21
RTF1-206ENST00000560447 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
RTF1-206ENST00000560447 ZCCHC11Q5TAX3 1644 aaKnown RBP13.71□□□□□ -0.22
RTF1-206ENST00000560447 TTC37Q6PGP7 1564 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms