RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 MAGI2Q86UL8 1455 aa36.7■■■■□ 3.47
ACTN1-220ENST00000556433 POGZQ7Z3K3 1410 aa36.7■■■■□ 3.47
ACTN1-220ENST00000556433 LRRIQ1Q96JM4 1722 aa36.69■■■■□ 3.46
ACTN1-220ENST00000556433 MYO5CQ9NQX4 1742 aa36.69■■■■□ 3.46
ACTN1-220ENST00000556433 ZFYVE16Q7Z3T8 1539 aa36.69■■■■□ 3.46
ACTN1-220ENST00000556433 PCF11O94913 1555 aaKnown RBP36.66■■■■□ 3.46
ACTN1-220ENST00000556433 CCDC18Q5T9S5 1454 aa36.65■■■■□ 3.46
ACTN1-220ENST00000556433 ARHGAP5Q13017 1502 aa36.63■■■■□ 3.45
ACTN1-220ENST00000556433 MADDQ8WXG6 1647 aa36.62■■■■□ 3.45
ACTN1-220ENST00000556433 ILDR1Q86SU0 546 aaPredicted RBP36.61■■■■□ 3.45
ACTN1-220ENST00000556433 MLECQ14165 292 aa36.58■■■■□ 3.45
ACTN1-220ENST00000556433 AFAP1Q8N556 730 aa36.58■■■■□ 3.45
ACTN1-220ENST00000556433 FYCO1Q9BQS8 1478 aa36.56■■■■□ 3.44
ACTN1-220ENST00000556433 ATP10AO60312 1499 aa36.54■■■■□ 3.44
ACTN1-220ENST00000556433 MYT1LQ9UL68 1186 aa36.53■■■■□ 3.44
ACTN1-220ENST00000556433 ZNF518AQ6AHZ1 1483 aa36.51■■■■□ 3.44
ACTN1-220ENST00000556433 PLPPR3Q6T4P5 718 aa36.5■■■■□ 3.43
ACTN1-220ENST00000556433 RIMS1Q86UR5 1692 aaKnown RBP36.49■■■■□ 3.43
ACTN1-220ENST00000556433 SIGLEC1Q9BZZ2 1709 aa36.49■■■■□ 3.43
ACTN1-220ENST00000556433 C9orf84Q5VXU9 1444 aa36.47■■■■□ 3.43
ACTN1-220ENST00000556433 CDC42BPBQ9Y5S2 1711 aa36.47■■■■□ 3.43
ACTN1-220ENST00000556433 PREX2Q70Z35 1606 aa36.41■■■■□ 3.42
ACTN1-220ENST00000556433 KDM5CP41229 1560 aa36.4■■■■□ 3.42
ACTN1-220ENST00000556433 ZNF777Q9ULD5 760 aaPredicted RBP36.38■■■■□ 3.41
ACTN1-220ENST00000556433 TRAPPC8Q9Y2L5 1435 aa36.38■■■■□ 3.41
ACTN1-220ENST00000556433 ARHGEF12Q9NZN5 1544 aa36.37■■■■□ 3.41
ACTN1-220ENST00000556433 ABCC1P33527 1531 aa36.34■■■■□ 3.41
ACTN1-220ENST00000556433 MLH3Q9UHC1 1453 aa36.34■■■■□ 3.41
ACTN1-220ENST00000556433 LMTK3Q96Q04 1460 aa36.33■■■■□ 3.41
ACTN1-220ENST00000556433 CDC42BPAQ5VT25 1732 aa36.31■■■■□ 3.4
ACTN1-220ENST00000556433 GPATCH8Q9UKJ3 1502 aaKnown RBP36.3■■■■□ 3.4
ACTN1-220ENST00000556433 FER1L4A9Z1Z3 1794 aa36.29■■■■□ 3.4
ACTN1-220ENST00000556433 MTUS2Q5JR59 1369 aa36.28■■■■□ 3.4
ACTN1-220ENST00000556433 DIP2CQ9Y2E4 1556 aa36.27■■■■□ 3.4
ACTN1-220ENST00000556433 CEP162Q5TB80 1403 aa36.26■■■■□ 3.4
ACTN1-220ENST00000556433 HSPA2P54652 639 aa36.26■■■■□ 3.4
ACTN1-220ENST00000556433 CFDP1Q9UEE9 299 aaPredicted RBP36.26■■■■□ 3.4
ACTN1-220ENST00000556433 ITSN2Q9NZM3 1697 aa36.26■■■■□ 3.39
ACTN1-220ENST00000556433 CCNB3Q8WWL7 1395 aa36.25■■■■□ 3.39
ACTN1-220ENST00000556433 CEBPAP49715 358 aaPredicted RBP36.24■■■■□ 3.39
ACTN1-220ENST00000556433 HNRNPMP52272 730 aaKnown RBP eCLIP36.24■■■■□ 3.391e-6■■■■□ 24.2
ACTN1-220ENST00000556433 ABCA6Q8N139 1617 aa36.21■■■■□ 3.39
ACTN1-220ENST00000556433 REREQ9P2R6 1566 aa36.2■■■■□ 3.39
ACTN1-220ENST00000556433 SAMD9LQ8IVG5 1584 aa36.19■■■■□ 3.38
ACTN1-220ENST00000556433 SPAG9O60271 1321 aaKnown RBP36.17■■■■□ 3.38
ACTN1-220ENST00000556433 SYCP2Q9BX26 1530 aa36.14■■■■□ 3.38
ACTN1-220ENST00000556433 KIDINS220Q9ULH0 1771 aa36.14■■■■□ 3.38
ACTN1-220ENST00000556433 LOC105371045A0A1W2PR82 267 aa36.13■■■■□ 3.37
ACTN1-220ENST00000556433 ESF1Q9H501 851 aaKnown RBP36.13■■■■□ 3.37
ACTN1-220ENST00000556433 KIAA1107Q9UPP5 1409 aa36.13■■■■□ 3.37
ACTN1-220ENST00000556433 AGLP35573 1532 aa36.13■■■■□ 3.37
ACTN1-220ENST00000556433 PLEKHH2Q8IVE3 1493 aa36.11■■■■□ 3.37
ACTN1-220ENST00000556433 EHBP1L1Q8N3D4 1523 aa36.06■■■■□ 3.36
ACTN1-220ENST00000556433 ZNF644Q9H582 1327 aaPredicted RBP36.06■■■■□ 3.36
ACTN1-220ENST00000556433 TIAM1Q13009 1591 aa36■■■■□ 3.35
ACTN1-220ENST00000556433 FBXO41Q8TF61 875 aa35.98■■■■□ 3.35
ACTN1-220ENST00000556433 ATP7AQ04656 1500 aa35.98■■■■□ 3.35
ACTN1-220ENST00000556433 PREX1Q8TCU6 1659 aa35.97■■■■□ 3.35
ACTN1-220ENST00000556433 SETD1BQ9UPS6 1966 aaKnown RBP35.95■■■■□ 3.35
ACTN1-220ENST00000556433 CNTLNQ9NXG0 1405 aa35.95■■■■□ 3.35
ACTN1-220ENST00000556433 UHRF1BP1Q6BDS2 1440 aa35.94■■■■□ 3.34
ACTN1-220ENST00000556433 A2MP01023 1474 aa35.92■■■■□ 3.34
ACTN1-220ENST00000556433 MBD5Q9P267 1494 aa35.91■■■■□ 3.34
ACTN1-220ENST00000556433 C3P01024 1663 aa35.91■■■■□ 3.34
ACTN1-220ENST00000556433 INO80Q9ULG1 1556 aaPredicted RBP35.9■■■■□ 3.34
ACTN1-220ENST00000556433 NCOA2Q15596 1464 aa35.9■■■■□ 3.34
ACTN1-220ENST00000556433 SUPT6HQ7KZ85 1726 aaKnown RBP35.88■■■■□ 3.34
ACTN1-220ENST00000556433 VPS8Q8N3P4 1428 aa35.88■■■■□ 3.33
ACTN1-220ENST00000556433 GGT6Q6P531 493 aa35.86■■■■□ 3.33
ACTN1-220ENST00000556433 ZMYM3Q14202 1370 aa35.84■■■■□ 3.33
ACTN1-220ENST00000556433 DMRT2Q9Y5R5 561 aa35.82■■■■□ 3.32
ACTN1-220ENST00000556433 PLXNC1O60486 1568 aa35.81■■■■□ 3.32
ACTN1-220ENST00000556433 RTEL1-TNFRSF6BF6WH68 1400 aa35.81■■■■□ 3.32
ACTN1-220ENST00000556433 RSPH4AQ5TD94 716 aa35.8■■■■□ 3.32
ACTN1-220ENST00000556433 CAMSAP2Q08AD1 1489 aa35.76■■■■□ 3.32
ACTN1-220ENST00000556433 LRRC9Q6ZRR7 1453 aa35.76■■■■□ 3.32
ACTN1-220ENST00000556433 PPP6R1Q9UPN7 881 aa35.76■■■■□ 3.32
ACTN1-220ENST00000556433 CERKQ8TCT0 537 aa35.75■■■■□ 3.31
ACTN1-220ENST00000556433 ADGBQ8N7X0 1667 aa35.74■■■■□ 3.31
ACTN1-220ENST00000556433 DHX29Q7Z478 1369 aaKnown RBP35.74■■■■□ 3.31
ACTN1-220ENST00000556433 NPATQ14207 1427 aa35.74■■■■□ 3.31
ACTN1-220ENST00000556433 CCDC141Q6ZP82 1450 aa35.73■■■■□ 3.31
ACTN1-220ENST00000556433 MROH2AA6NES4 1674 aa35.72■■■■□ 3.31
ACTN1-220ENST00000556433 KANK4Q5T7N3 995 aaPredicted RBP35.72■■■■□ 3.31
ACTN1-220ENST00000556433 STRCQ7RTU9 1775 aa35.71■■■■□ 3.31
ACTN1-220ENST00000556433 TSPY4P0CV99 314 aa35.69■■■■□ 3.3
ACTN1-220ENST00000556433 TSPY10P0CW01 314 aa35.69■■■■□ 3.3
ACTN1-220ENST00000556433 CLTCQ00610 1675 aaKnown RBP35.68■■■■□ 3.3
ACTN1-220ENST00000556433 KIF3BO15066 747 aa35.67■■■■□ 3.3
ACTN1-220ENST00000556433 MAP3K1Q13233 1512 aa35.65■■■■□ 3.3
ACTN1-220ENST00000556433 PTPRKQ15262 1439 aa35.62■■■■□ 3.29
ACTN1-220ENST00000556433 PTPRTO14522 1441 aa35.61■■■■□ 3.29
ACTN1-220ENST00000556433 ARHGEF5Q12774 1597 aa35.59■■■■□ 3.29
ACTN1-220ENST00000556433 NCOA1Q15788 1441 aa35.58■■■■□ 3.29
ACTN1-220ENST00000556433 APLP2Q06481 763 aa35.56■■■■□ 3.28
ACTN1-220ENST00000556433 MYOM3Q5VTT5 1437 aa35.52■■■■□ 3.28
ACTN1-220ENST00000556433 CAMSAP1Q5T5Y3 1602 aa35.52■■■■□ 3.28
ACTN1-220ENST00000556433 WASHC2CQ9Y4E1 1318 aa35.52■■■■□ 3.28
ACTN1-220ENST00000556433 MIA2Q96PC5 1412 aa35.51■■■■□ 3.28
ACTN1-220ENST00000556433 NCKAP5LQ9HCH0 1330 aa35.51■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms