RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 SCAPERQ9BY12 1400 aa29.53■■■□□ 2.32
SHMT2-206ENST00000553529 YEATS2Q9ULM3 1422 aa29.53■■■□□ 2.32
SHMT2-206ENST00000553529 ARHGAP5Q13017 1502 aa29.51■■■□□ 2.32
SHMT2-206ENST00000553529 POGZQ7Z3K3 1410 aa29.48■■■□□ 2.31
SHMT2-206ENST00000553529 ZMYM4Q5VZL5 1548 aa29.48■■■□□ 2.31
SHMT2-206ENST00000553529 PREX2Q70Z35 1606 aa29.45■■■□□ 2.31
SHMT2-206ENST00000553529 CDC42BPAQ5VT25 1732 aa29.45■■■□□ 2.3
SHMT2-206ENST00000553529 ADAMTSL3P82987 1691 aa29.44■■■□□ 2.3
SHMT2-206ENST00000553529 ZFYVE16Q7Z3T8 1539 aa29.44■■■□□ 2.3
SHMT2-206ENST00000553529 BCORL1Q5H9F3 1711 aa29.42■■■□□ 2.3
SHMT2-206ENST00000553529 EFCAB2Q5VUJ9 269 aa29.42■■■□□ 2.3
SHMT2-206ENST00000553529 ARHGEF12Q9NZN5 1544 aa29.41■■■□□ 2.3
SHMT2-206ENST00000553529 MADDQ8WXG6 1647 aa29.4■■■□□ 2.3
SHMT2-206ENST00000553529 ARID4BQ4LE39 1312 aaPredicted RBP29.4■■■□□ 2.3
SHMT2-206ENST00000553529 AFAP1Q8N556 730 aa29.37■■■□□ 2.29
SHMT2-206ENST00000553529 ABCC1P33527 1531 aa29.35■■■□□ 2.29
SHMT2-206ENST00000553529 TRAPPC8Q9Y2L5 1435 aa29.34■■■□□ 2.29
SHMT2-206ENST00000553529 ITSN2Q9NZM3 1697 aa29.34■■■□□ 2.29
SHMT2-206ENST00000553529 HECW2Q9P2P5 1572 aa29.33■■■□□ 2.29
SHMT2-206ENST00000553529 SAMD9LQ8IVG5 1584 aa29.32■■■□□ 2.28
SHMT2-206ENST00000553529 KDM5CP41229 1560 aa29.31■■■□□ 2.28
SHMT2-206ENST00000553529 GPATCH8Q9UKJ3 1502 aaKnown RBP29.31■■■□□ 2.28
SHMT2-206ENST00000553529 PTPRMP28827 1452 aa29.3■■■□□ 2.28
SHMT2-206ENST00000553529 RIMS1Q86UR5 1692 aaKnown RBP29.3■■■□□ 2.28
SHMT2-206ENST00000553529 MLECQ14165 292 aa29.28■■■□□ 2.28
SHMT2-206ENST00000553529 ZNF777Q9ULD5 760 aaPredicted RBP29.28■■■□□ 2.28
SHMT2-206ENST00000553529 ZNF518AQ6AHZ1 1483 aa29.28■■■□□ 2.28
SHMT2-206ENST00000553529 MAGI2Q86UL8 1455 aa29.28■■■□□ 2.28
SHMT2-206ENST00000553529 MTUS2Q5JR59 1369 aa29.26■■■□□ 2.28
SHMT2-206ENST00000553529 ABCA6Q8N139 1617 aa29.26■■■□□ 2.27
SHMT2-206ENST00000553529 DIP2CQ9Y2E4 1556 aa29.25■■■□□ 2.27
SHMT2-206ENST00000553529 SYCP2Q9BX26 1530 aa29.25■■■□□ 2.27
SHMT2-206ENST00000553529 TIAM1Q13009 1591 aa29.23■■■□□ 2.27
SHMT2-206ENST00000553529 PLPPR3Q6T4P5 718 aa29.23■■■□□ 2.27
SHMT2-206ENST00000553529 ATP10AO60312 1499 aa29.23■■■□□ 2.27
SHMT2-206ENST00000553529 EHBP1L1Q8N3D4 1523 aa29.22■■■□□ 2.27
SHMT2-206ENST00000553529 C9orf84Q5VXU9 1444 aa29.2■■■□□ 2.27
SHMT2-206ENST00000553529 MYT1LQ9UL68 1186 aa29.19■■■□□ 2.26
SHMT2-206ENST00000553529 CCNB3Q8WWL7 1395 aa29.18■■■□□ 2.26
SHMT2-206ENST00000553529 KIDINS220Q9ULH0 1771 aa29.18■■■□□ 2.26
SHMT2-206ENST00000553529 ZNF644Q9H582 1327 aaPredicted RBP29.18■■■□□ 2.26
SHMT2-206ENST00000553529 HNRNPMP52272 730 aaKnown RBP eCLIP29.17■■■□□ 2.26
SHMT2-206ENST00000553529 VPS8Q8N3P4 1428 aa29.17■■■□□ 2.26
SHMT2-206ENST00000553529 FER1L4A9Z1Z3 1794 aa29.16■■■□□ 2.26
SHMT2-206ENST00000553529 MLH3Q9UHC1 1453 aa29.13■■■□□ 2.25
SHMT2-206ENST00000553529 CFDP1Q9UEE9 299 aaPredicted RBP29.12■■■□□ 2.25
SHMT2-206ENST00000553529 NCOA2Q15596 1464 aa29.1■■■□□ 2.25
SHMT2-206ENST00000553529 KANK4Q5T7N3 995 aaPredicted RBP29.07■■■□□ 2.24
SHMT2-206ENST00000553529 SUPT6HQ7KZ85 1726 aaKnown RBP29.06■■■□□ 2.24
SHMT2-206ENST00000553529 REREQ9P2R6 1566 aa29.04■■■□□ 2.24
SHMT2-206ENST00000553529 INO80Q9ULG1 1556 aaPredicted RBP29.03■■■□□ 2.24
SHMT2-206ENST00000553529 CEBPAP49715 358 aaPredicted RBP29.02■■■□□ 2.24
SHMT2-206ENST00000553529 LRRC9Q6ZRR7 1453 aa29.02■■■□□ 2.24
SHMT2-206ENST00000553529 LMTK3Q96Q04 1460 aa29.02■■■□□ 2.24
SHMT2-206ENST00000553529 ATP7AQ04656 1500 aa29.01■■■□□ 2.23
SHMT2-206ENST00000553529 KIAA1107Q9UPP5 1409 aa29■■■□□ 2.23
SHMT2-206ENST00000553529 MBD5Q9P267 1494 aa28.99■■■□□ 2.23
SHMT2-206ENST00000553529 SPAG9O60271 1321 aaKnown RBP28.98■■■□□ 2.23
SHMT2-206ENST00000553529 CAMSAP2Q08AD1 1489 aa28.96■■■□□ 2.23
SHMT2-206ENST00000553529 PLEKHH2Q8IVE3 1493 aa28.96■■■□□ 2.23
SHMT2-206ENST00000553529 AGLP35573 1532 aa28.94■■■□□ 2.22
SHMT2-206ENST00000553529 HSPA2P54652 639 aa28.94■■■□□ 2.22
SHMT2-206ENST00000553529 PLXNC1O60486 1568 aa28.9■■■□□ 2.22
SHMT2-206ENST00000553529 C3P01024 1663 aa28.89■■■□□ 2.21
SHMT2-206ENST00000553529 ADGBQ8N7X0 1667 aa28.86■■■□□ 2.21
SHMT2-206ENST00000553529 A2MP01023 1474 aa28.86■■■□□ 2.21
SHMT2-206ENST00000553529 MAP3K1Q13233 1512 aa28.86■■■□□ 2.21
SHMT2-206ENST00000553529 CCDC141Q6ZP82 1450 aa28.82■■■□□ 2.2
SHMT2-206ENST00000553529 CLTCQ00610 1675 aaKnown RBP28.79■■■□□ 2.2
SHMT2-206ENST00000553529 PREX1Q8TCU6 1659 aa28.79■■■□□ 2.2
SHMT2-206ENST00000553529 MYOM3Q5VTT5 1437 aa28.76■■■□□ 2.19
SHMT2-206ENST00000553529 ARHGEF5Q12774 1597 aa28.75■■■□□ 2.19
SHMT2-206ENST00000553529 RTEL1-TNFRSF6BF6WH68 1400 aa28.73■■■□□ 2.19
SHMT2-206ENST00000553529 GGT6Q6P531 493 aa28.73■■■□□ 2.19
SHMT2-206ENST00000553529 ESF1Q9H501 851 aaKnown RBP28.69■■■□□ 2.18
SHMT2-206ENST00000553529 MROH2AA6NES4 1674 aa28.67■■■□□ 2.18
SHMT2-206ENST00000553529 DHX29Q7Z478 1369 aaKnown RBP28.67■■■□□ 2.18
SHMT2-206ENST00000553529 ILDR1Q86SU0 546 aaPredicted RBP28.66■■■□□ 2.18
SHMT2-206ENST00000553529 ZMYM3Q14202 1370 aa28.65■■■□□ 2.18
SHMT2-206ENST00000553529 PTPN23Q9H3S7 1636 aa28.65■■■□□ 2.18
SHMT2-206ENST00000553529 CNTLNQ9NXG0 1405 aa28.64■■■□□ 2.18
SHMT2-206ENST00000553529 APLP2Q06481 763 aa28.64■■■□□ 2.18
SHMT2-206ENST00000553529 UHRF1BP1Q6BDS2 1440 aa28.63■■■□□ 2.17
SHMT2-206ENST00000553529 MIA2Q96PC5 1412 aa28.63■■■□□ 2.17
SHMT2-206ENST00000553529 STRCQ7RTU9 1775 aa28.62■■■□□ 2.17
SHMT2-206ENST00000553529 KIF3BO15066 747 aa28.62■■■□□ 2.17
SHMT2-206ENST00000553529 MAST1Q9Y2H9 1570 aa28.62■■■□□ 2.17
SHMT2-206ENST00000553529 CROCC2H7BZ55 1655 aa28.58■■■□□ 2.17
SHMT2-206ENST00000553529 TSPY4P0CV99 314 aa28.57■■■□□ 2.16
SHMT2-206ENST00000553529 TSPY10P0CW01 314 aa28.57■■■□□ 2.16
SHMT2-206ENST00000553529 PTPRKQ15262 1439 aa28.57■■■□□ 2.16
SHMT2-206ENST00000553529 FGD6Q6ZV73 1430 aa28.57■■■□□ 2.16
SHMT2-206ENST00000553529 ABCC5O15440 1437 aa28.56■■■□□ 2.16
SHMT2-206ENST00000553529 RSPH4AQ5TD94 716 aa28.56■■■□□ 2.16
SHMT2-206ENST00000553529 MYO3AQ8NEV4 1616 aa28.54■■■□□ 2.16
SHMT2-206ENST00000553529 SETD1BQ9UPS6 1966 aaKnown RBP28.54■■■□□ 2.16
SHMT2-206ENST00000553529 PPARGC1BQ86YN6 1023 aaKnown RBP28.52■■■□□ 2.16
SHMT2-206ENST00000553529 TCOF1Q13428 1488 aaKnown RBP28.52■■■□□ 2.16
SHMT2-206ENST00000553529 NPATQ14207 1427 aa28.51■■■□□ 2.15
SHMT2-206ENST00000553529 DNMT1P26358 1616 aaKnown RBP28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms