RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 NISCHQ9Y2I1 1504 aa45.24■■■■■ 4.83
SHMT2-206ENST00000553529 CCDC180Q9P1Z9 1646 aa40.32■■■■■ 4.05
SHMT2-206ENST00000553529 ABCC9O60706 1549 aa40.1■■■■■ 4.01
SHMT2-206ENST00000553529 RB1CC1Q8TDY2 1594 aa38.15■■■■□ 3.7
SHMT2-206ENST00000553529 DCAF8L2P0C7V8 631 aa38.07■■■■□ 3.68
SHMT2-206ENST00000553529 NACADO15069 1562 aa37.97■■■■□ 3.67
SHMT2-206ENST00000553529 ZCCHC6Q5VYS8 1495 aaKnown RBP37.61■■■■□ 3.61
SHMT2-206ENST00000553529 UNC13AQ9UPW8 1703 aa37.53■■■■□ 3.6
SHMT2-206ENST00000553529 MYO15BQ96JP2 1530 aa37.5■■■■□ 3.59
SHMT2-206ENST00000553529 PABPN1Q86U42 306 aaKnown RBP eCLIP37.43■■■■□ 3.58
SHMT2-206ENST00000553529 DNAJC5BQ9UF47 199 aa37.29■■■■□ 3.56
SHMT2-206ENST00000553529 DCAF1Q9Y4B6 1507 aa37.24■■■■□ 3.55
SHMT2-206ENST00000553529 BICRAQ9NZM4 1560 aa37.22■■■■□ 3.55
SHMT2-206ENST00000553529 SCRIBQ14160 1630 aa37■■■■□ 3.51
SHMT2-206ENST00000553529 SHROOM4Q9ULL8 1493 aa36.39■■■■□ 3.42
SHMT2-206ENST00000553529 CC2D2AQ9P2K1 1620 aa36.19■■■■□ 3.38
SHMT2-206ENST00000553529 EIF4G1Q04637 1599 aaKnown RBP36.19■■■■□ 3.38
SHMT2-206ENST00000553529 CECR2Q9BXF3 1484 aa35.97■■■■□ 3.35
SHMT2-206ENST00000553529 SMARCA4P51532 1647 aa35.24■■■■□ 3.23
SHMT2-206ENST00000553529 ATAD2BQ9ULI0 1458 aa35.12■■■■□ 3.21
SHMT2-206ENST00000553529 NCAPD3P42695 1498 aa35.07■■■■□ 3.2
SHMT2-206ENST00000553529 BAZ1AQ9NRL2 1556 aaPredicted RBP35.02■■■■□ 3.2
SHMT2-206ENST00000553529 MROH2BQ7Z745 1585 aa34.99■■■■□ 3.19
SHMT2-206ENST00000553529 SMARCA2P51531 1590 aa34.94■■■■□ 3.18
SHMT2-206ENST00000553529 HMGXB3Q12766 1538 aa34.86■■■■□ 3.17
SHMT2-206ENST00000553529 PEG3Q9GZU2 1588 aa34.79■■■■□ 3.16
SHMT2-206ENST00000553529 BAZ1BQ9UIG0 1483 aaKnown RBP34.78■■■■□ 3.16
SHMT2-206ENST00000553529 NESP48681 1621 aa34.64■■■■□ 3.14
SHMT2-206ENST00000553529 WIZO95785 1651 aa34.63■■■■□ 3.13
SHMT2-206ENST00000553529 ERCC6Q03468 1493 aa34.45■■■■□ 3.1
SHMT2-206ENST00000553529 RSF1Q96T23 1441 aaPredicted RBP34.36■■■■□ 3.09
SHMT2-206ENST00000553529 LAMC3Q9Y6N6 1575 aa34.21■■■■□ 3.07
SHMT2-206ENST00000553529 KIF21AQ7Z4S6 1674 aa34.17■■■■□ 3.06
SHMT2-206ENST00000553529 CUX2O14529 1486 aa34.14■■■■□ 3.06
SHMT2-206ENST00000553529 THOC2Q8NI27 1593 aaKnown RBP34.11■■■■□ 3.05
SHMT2-206ENST00000553529 TOP2AP11388 1531 aaKnown RBP34.08■■■■□ 3.05
SHMT2-206ENST00000553529 CADPSQ9ULU8 1353 aa34.05■■■■□ 3.04
SHMT2-206ENST00000553529 PDS5BQ9NTI5 1447 aa33.94■■■■□ 3.02
SHMT2-206ENST00000553529 CFTRP13569 1480 aa33.77■■■■□ 3
SHMT2-206ENST00000553529 CCDC88BA6NC98 1476 aa33.74■■■□□ 2.99
SHMT2-206ENST00000553529 MRC2Q9UBG0 1479 aa33.74■■■□□ 2.99
SHMT2-206ENST00000553529 FANCD2Q9BXW9 1451 aa33.73■■■□□ 2.99
SHMT2-206ENST00000553529 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
SHMT2-206ENST00000553529 WDR62O43379 1518 aa33.66■■■□□ 2.98
SHMT2-206ENST00000553529 DNAJC5Q9H3Z4 198 aa33.65■■■□□ 2.98
SHMT2-206ENST00000553529 PRDM2Q13029 1718 aa33.51■■■□□ 2.96
SHMT2-206ENST00000553529 URB2Q14146 1524 aaKnown RBP33.51■■■□□ 2.95
SHMT2-206ENST00000553529 SUPT5HO00267 1087 aaKnown RBP33.25■■■□□ 2.91
SHMT2-206ENST00000553529 TOPBP1Q92547 1522 aa33.17■■■□□ 2.9
SHMT2-206ENST00000553529 ZNF608Q9ULD9 1512 aaPredicted RBP33.07■■■□□ 2.88
SHMT2-206ENST00000553529 DNMBPQ6XZF7 1577 aa33.04■■■□□ 2.88
SHMT2-206ENST00000553529 IFT140Q96RY7 1462 aa32.95■■■□□ 2.87
SHMT2-206ENST00000553529 ABCC8Q09428 1581 aa32.88■■■□□ 2.85
SHMT2-206ENST00000553529 POLA1P09884 1462 aaPredicted RBP32.86■■■□□ 2.85
SHMT2-206ENST00000553529 TARBP1Q13395 1621 aaKnown RBP32.86■■■□□ 2.85
SHMT2-206ENST00000553529 EIF4G3O43432 1585 aaKnown RBP32.85■■■□□ 2.85
SHMT2-206ENST00000553529 CUX1P39880 1505 aa32.83■■■□□ 2.85
SHMT2-206ENST00000553529 RAD54L2Q9Y4B4 1467 aa32.83■■■□□ 2.85
SHMT2-206ENST00000553529 AQRO60306 1485 aaKnown RBP eCLIP32.78■■■□□ 2.846e-8■■■■□ 22.1
SHMT2-206ENST00000553529 FGD5Q6ZNL6 1462 aa32.75■■■□□ 2.83
SHMT2-206ENST00000553529 SOGA1O94964 1423 aa32.66■■■□□ 2.82
SHMT2-206ENST00000553529 OSCARQ8IYS5 282 aa32.65■■■□□ 2.82
SHMT2-206ENST00000553529 TDRD9Q8NDG6 1382 aaKnown RBP32.63■■■□□ 2.81
SHMT2-206ENST00000553529 CHD1O14646 1710 aa32.56■■■□□ 2.8
SHMT2-206ENST00000553529 TRIM41Q8WV44 630 aa32.53■■■□□ 2.8
SHMT2-206ENST00000553529 WDR97A6NE52 1622 aa32.52■■■□□ 2.8
SHMT2-206ENST00000553529 SYNJ1O43426 1573 aa32.45■■■□□ 2.79
SHMT2-206ENST00000553529 SNAPC4Q5SXM2 1469 aa32.44■■■□□ 2.78
SHMT2-206ENST00000553529 FBLN2P98095 1184 aa32.41■■■□□ 2.78
SHMT2-206ENST00000553529 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
SHMT2-206ENST00000553529 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
SHMT2-206ENST00000553529 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
SHMT2-206ENST00000553529 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
SHMT2-206ENST00000553529 WRNQ14191 1432 aaPredicted RBP eCLIP32.34■■■□□ 2.77
SHMT2-206ENST00000553529 PBRM1Q86U86 1689 aa32.34■■■□□ 2.77
SHMT2-206ENST00000553529 TOP2BQ02880 1626 aa32.33■■■□□ 2.77
SHMT2-206ENST00000553529 ABCA10Q8WWZ4 1543 aa32.31■■■□□ 2.76
SHMT2-206ENST00000553529 ABCA5Q8WWZ7 1642 aa32.3■■■□□ 2.76
SHMT2-206ENST00000553529 GRIN2BQ13224 1484 aa32.29■■■□□ 2.76
SHMT2-206ENST00000553529 GAPVD1Q14C86 1478 aa32.28■■■□□ 2.76
SHMT2-206ENST00000553529 ARHGEF11O15085 1522 aa32.27■■■□□ 2.76
SHMT2-206ENST00000553529 MAGI1Q96QZ7 1491 aaPredicted RBP32.22■■■□□ 2.75
SHMT2-206ENST00000553529 CHMP7Q8WUX9 453 aaPredicted RBP32.15■■■□□ 2.74
SHMT2-206ENST00000553529 SYNJ2O15056 1496 aa32.14■■■□□ 2.74
SHMT2-206ENST00000553529 CLASP1Q7Z460 1538 aa32.12■■■□□ 2.73
SHMT2-206ENST00000553529 ARAP1Q96P48 1450 aa32.03■■■□□ 2.72
SHMT2-206ENST00000553529 ADAMTS12P58397 1594 aa32.03■■■□□ 2.72
SHMT2-206ENST00000553529 CYB5RLQ6IPT4 315 aa31.99■■■□□ 2.71
SHMT2-206ENST00000553529 GRIN2AQ12879 1464 aa31.93■■■□□ 2.7
SHMT2-206ENST00000553529 CEP170Q5SW79 1584 aa31.9■■■□□ 2.7
SHMT2-206ENST00000553529 ERICH3Q5RHP9 1530 aa31.87■■■□□ 2.69
SHMT2-206ENST00000553529 ERCC6L2Q5T890 1561 aa31.84■■■□□ 2.69
SHMT2-206ENST00000553529 FHAD1B1AJZ9 1412 aa31.83■■■□□ 2.69
SHMT2-206ENST00000553529 NUP160Q12769 1436 aa31.79■■■□□ 2.68
SHMT2-206ENST00000553529 IGF1RP08069 1367 aa31.64■■■□□ 2.66
SHMT2-206ENST00000553529 SHROOM2Q13796 1616 aa31.64■■■□□ 2.65
SHMT2-206ENST00000553529 KIF27Q86VH2 1401 aa31.63■■■□□ 2.65
SHMT2-206ENST00000553529 RUSC2Q8N2Y8 1516 aa31.58■■■□□ 2.65
SHMT2-206ENST00000553529 CUL7Q14999 1698 aa31.51■■■□□ 2.64
SHMT2-206ENST00000553529 PRG4Q92954 1404 aaPredicted RBP31.48■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms