RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ARHGAP5Q13017 1502 aa25.33■■□□□ 1.65
CHMP1A-209ENST00000550872 ARAP3Q8WWN8 1544 aa25.33■■□□□ 1.65
CHMP1A-209ENST00000550872 SUPT6HQ7KZ85 1726 aaKnown RBP25.33■■□□□ 1.65
CHMP1A-209ENST00000550872 NCOA2Q15596 1464 aa25.32■■□□□ 1.64
CHMP1A-209ENST00000550872 GPATCH8Q9UKJ3 1502 aaKnown RBP25.32■■□□□ 1.64
CHMP1A-209ENST00000550872 CFAP74Q9C0B2 1584 aa25.31■■□□□ 1.64
CHMP1A-209ENST00000550872 PREX2Q70Z35 1606 aa25.3■■□□□ 1.64
CHMP1A-209ENST00000550872 CDC42BPAQ5VT25 1732 aa25.29■■□□□ 1.64
CHMP1A-209ENST00000550872 CDC42BPBQ9Y5S2 1711 aa25.29■■□□□ 1.64
CHMP1A-209ENST00000550872 CFDP1Q9UEE9 299 aaPredicted RBP25.29■■□□□ 1.64
CHMP1A-209ENST00000550872 ZNF777Q9ULD5 760 aaPredicted RBP25.28■■□□□ 1.64
CHMP1A-209ENST00000550872 RAPGEF3O95398 923 aa25.26■■□□□ 1.63
CHMP1A-209ENST00000550872 ADGRL1O94910 1474 aa25.25■■□□□ 1.63
CHMP1A-209ENST00000550872 SCAPERQ9BY12 1400 aa25.24■■□□□ 1.63
CHMP1A-209ENST00000550872 DENND4BO75064 1496 aaPredicted RBP25.23■■□□□ 1.63
CHMP1A-209ENST00000550872 ITSN2Q9NZM3 1697 aa25.2■■□□□ 1.63
CHMP1A-209ENST00000550872 PPARGC1BQ86YN6 1023 aaKnown RBP25.18■■□□□ 1.62
CHMP1A-209ENST00000550872 ZNF644Q9H582 1327 aaPredicted RBP25.15■■□□□ 1.62
CHMP1A-209ENST00000550872 SAMD9LQ8IVG5 1584 aa25.14■■□□□ 1.62
CHMP1A-209ENST00000550872 MYOM3Q5VTT5 1437 aa25.14■■□□□ 1.62
CHMP1A-209ENST00000550872 HNRNPMP52272 730 aaKnown RBP eCLIP25.13■■□□□ 1.61
CHMP1A-209ENST00000550872 POGZQ7Z3K3 1410 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 ABCC1P33527 1531 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 AFAP1Q8N556 730 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 PLEKHH2Q8IVE3 1493 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 FRMPD1Q5SYB0 1578 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 RICTORQ6R327 1708 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 ARHGEF12Q9NZN5 1544 aa25.12■■□□□ 1.61
CHMP1A-209ENST00000550872 KIAA1107Q9UPP5 1409 aa25.1■■□□□ 1.61
CHMP1A-209ENST00000550872 MIA2Q96PC5 1412 aa25.09■■□□□ 1.61
CHMP1A-209ENST00000550872 TRAPPC8Q9Y2L5 1435 aa25.09■■□□□ 1.61
CHMP1A-209ENST00000550872 ZNF518AQ6AHZ1 1483 aa25.08■■□□□ 1.6
CHMP1A-209ENST00000550872 SYCP2Q9BX26 1530 aa25.07■■□□□ 1.6
CHMP1A-209ENST00000550872 MYT1LQ9UL68 1186 aa25.07■■□□□ 1.6
CHMP1A-209ENST00000550872 CAMSAP2Q08AD1 1489 aa25.06■■□□□ 1.6
CHMP1A-209ENST00000550872 ZMYM4Q5VZL5 1548 aa25.03■■□□□ 1.6
CHMP1A-209ENST00000550872 FGD6Q6ZV73 1430 aa25.02■■□□□ 1.6
CHMP1A-209ENST00000550872 MAGI2Q86UL8 1455 aa25.01■■□□□ 1.59
CHMP1A-209ENST00000550872 MBD5Q9P267 1494 aa25.01■■□□□ 1.59
CHMP1A-209ENST00000550872 RSPH4AQ5TD94 716 aa25■■□□□ 1.59
CHMP1A-209ENST00000550872 KDM5CP41229 1560 aa25■■□□□ 1.59
CHMP1A-209ENST00000550872 SPAG9O60271 1321 aaKnown RBP24.99■■□□□ 1.59
CHMP1A-209ENST00000550872 ZFYVE16Q7Z3T8 1539 aa24.98■■□□□ 1.59
CHMP1A-209ENST00000550872 YEATS2Q9ULM3 1422 aa24.98■■□□□ 1.59
CHMP1A-209ENST00000550872 PTPN23Q9H3S7 1636 aa24.97■■□□□ 1.59
CHMP1A-209ENST00000550872 MLH3Q9UHC1 1453 aa24.96■■□□□ 1.59
CHMP1A-209ENST00000550872 HECW2Q9P2P5 1572 aa24.94■■□□□ 1.58
CHMP1A-209ENST00000550872 FAM50AQ14320 339 aaKnown RBP24.94■■□□□ 1.58
CHMP1A-209ENST00000550872 CCDC141Q6ZP82 1450 aa24.94■■□□□ 1.58
CHMP1A-209ENST00000550872 ARHGEF40Q8TER5 1519 aa24.93■■□□□ 1.58
CHMP1A-209ENST00000550872 TSPY4P0CV99 314 aa24.93■■□□□ 1.58
CHMP1A-209ENST00000550872 TSPY10P0CW01 314 aa24.93■■□□□ 1.58
CHMP1A-209ENST00000550872 TCOF1Q13428 1488 aaKnown RBP24.92■■□□□ 1.58
CHMP1A-209ENST00000550872 ARHGEF5Q12774 1597 aa24.92■■□□□ 1.58
CHMP1A-209ENST00000550872 ATP10AO60312 1499 aa24.9■■□□□ 1.58
CHMP1A-209ENST00000550872 ARID4BQ4LE39 1312 aaPredicted RBP24.89■■□□□ 1.58
CHMP1A-209ENST00000550872 KIDINS220Q9ULH0 1771 aa24.88■■□□□ 1.57
CHMP1A-209ENST00000550872 ATP7AQ04656 1500 aa24.87■■□□□ 1.57
CHMP1A-209ENST00000550872 RTEL1-TNFRSF6BF6WH68 1400 aa24.86■■□□□ 1.57
CHMP1A-209ENST00000550872 DIP2CQ9Y2E4 1556 aa24.85■■□□□ 1.57
CHMP1A-209ENST00000550872 C9orf84Q5VXU9 1444 aa24.85■■□□□ 1.57
CHMP1A-209ENST00000550872 INO80Q9ULG1 1556 aaPredicted RBP24.84■■□□□ 1.57
CHMP1A-209ENST00000550872 ABCC5O15440 1437 aa24.84■■□□□ 1.57
CHMP1A-209ENST00000550872 ABCA6Q8N139 1617 aa24.83■■□□□ 1.57
CHMP1A-209ENST00000550872 DAPK1P53355 1430 aa24.82■■□□□ 1.56
CHMP1A-209ENST00000550872 DNMT1P26358 1616 aaKnown RBP24.79■■□□□ 1.56
CHMP1A-209ENST00000550872 CHIC2Q9UKJ5 165 aa24.77■■□□□ 1.56
CHMP1A-209ENST00000550872 RRBP1Q9P2E9 1410 aaKnown RBP24.77■■□□□ 1.56
CHMP1A-209ENST00000550872 MAST1Q9Y2H9 1570 aa24.76■■□□□ 1.55
CHMP1A-209ENST00000550872 MLECQ14165 292 aa24.76■■□□□ 1.55
CHMP1A-209ENST00000550872 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.76■■□□□ 1.553e-6■■■■□ 26.4
CHMP1A-209ENST00000550872 A2MP01023 1474 aa24.76■■□□□ 1.55
CHMP1A-209ENST00000550872 SHANK2Q9UPX8 1470 aa24.75■■□□□ 1.55
CHMP1A-209ENST00000550872 REREQ9P2R6 1566 aa24.75■■□□□ 1.55
CHMP1A-209ENST00000550872 SIGLEC1Q9BZZ2 1709 aa24.75■■□□□ 1.55
CHMP1A-209ENST00000550872 ITGAEP38570 1179 aa24.74■■□□□ 1.55
CHMP1A-209ENST00000550872 CROCC2H7BZ55 1655 aa24.73■■□□□ 1.55
CHMP1A-209ENST00000550872 ADGBQ8N7X0 1667 aa24.72■■□□□ 1.55
CHMP1A-209ENST00000550872 DHX29Q7Z478 1369 aaKnown RBP24.72■■□□□ 1.55
CHMP1A-209ENST00000550872 AGLP35573 1532 aa24.71■■□□□ 1.55
CHMP1A-209ENST00000550872 RRP7BPQ9NSQ0 103 aa24.7■■□□□ 1.54
CHMP1A-209ENST00000550872 ANKRD30AQ9BXX3 1397 aa24.69■■□□□ 1.54
CHMP1A-209ENST00000550872 BCORL1Q5H9F3 1711 aa24.69■■□□□ 1.54
CHMP1A-209ENST00000550872 ILDR1Q86SU0 546 aaPredicted RBP24.67■■□□□ 1.54
CHMP1A-209ENST00000550872 PTPRKQ15262 1439 aa24.67■■□□□ 1.54
CHMP1A-209ENST00000550872 PLXNC1O60486 1568 aa24.67■■□□□ 1.54
CHMP1A-209ENST00000550872 KIF15Q9NS87 1388 aa24.66■■□□□ 1.54
CHMP1A-209ENST00000550872 KIF3BO15066 747 aa24.65■■□□□ 1.54
CHMP1A-209ENST00000550872 NCOA1Q15788 1441 aa24.64■■□□□ 1.54
CHMP1A-209ENST00000550872 ADAMTSL3P82987 1691 aa24.64■■□□□ 1.53
CHMP1A-209ENST00000550872 GGT6Q6P531 493 aa24.63■■□□□ 1.53
CHMP1A-209ENST00000550872 ADGRL2O95490 1459 aa24.62■■□□□ 1.53
CHMP1A-209ENST00000550872 PTPRMP28827 1452 aa24.62■■□□□ 1.53
CHMP1A-209ENST00000550872 DUOX2Q9NRD8 1548 aa24.61■■□□□ 1.53
CHMP1A-209ENST00000550872 ESF1Q9H501 851 aaKnown RBP24.59■■□□□ 1.53
CHMP1A-209ENST00000550872 MADDQ8WXG6 1647 aa24.58■■□□□ 1.53
CHMP1A-209ENST00000550872 ROCK1Q13464 1354 aa24.57■■□□□ 1.52
CHMP1A-209ENST00000550872 ERBINQ96RT1 1412 aa24.54■■□□□ 1.52
CHMP1A-209ENST00000550872 FER1L4A9Z1Z3 1794 aa24.54■■□□□ 1.52
CHMP1A-209ENST00000550872 RIMS1Q86UR5 1692 aaKnown RBP24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms