RNA–Protein interactions for RNA: ENST00000550557.1

NR4A1-215, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 1 (best)

Gene NR4A1, Length 4,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-215ENST00000550557 HNRNPUQ00839 825 aaKnown RBP eCLIP16.21■□□□□ 0.19
NR4A1-215ENST00000550557 CCDC18Q5T9S5 1454 aa16.21■□□□□ 0.19
NR4A1-215ENST00000550557 MRC2Q9UBG0 1479 aa16.21■□□□□ 0.19
NR4A1-215ENST00000550557 NUP155O75694 1391 aa16.21■□□□□ 0.18
NR4A1-215ENST00000550557 DHX57Q6P158 1386 aaKnown RBP16.2■□□□□ 0.18
NR4A1-215ENST00000550557 NPHP1O15259 732 aa16.19■□□□□ 0.18
NR4A1-215ENST00000550557 PAK3O75914 559 aaPredicted RBP16.18■□□□□ 0.18
NR4A1-215ENST00000550557 NUDCQ9Y266 331 aa16.17■□□□□ 0.18
NR4A1-215ENST00000550557 GRIN2BQ13224 1484 aa16.15■□□□□ 0.18
NR4A1-215ENST00000550557 ARAP1Q96P48 1450 aa16.15■□□□□ 0.18
NR4A1-215ENST00000550557 TNNT2P45379 298 aaPredicted RBP16.15■□□□□ 0.18
NR4A1-215ENST00000550557 CCDC9Q9Y3X0 531 aaKnown RBP16.15■□□□□ 0.18
NR4A1-215ENST00000550557 TMF1P82094 1093 aa16.13■□□□□ 0.17
NR4A1-215ENST00000550557 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.13■□□□□ 0.17
NR4A1-215ENST00000550557 SUPT16HQ9Y5B9 1047 aaKnown RBP16.12■□□□□ 0.17
NR4A1-215ENST00000550557 MAPK8IP3Q9UPT6 1336 aa16.12■□□□□ 0.17
NR4A1-215ENST00000550557 CSB-PGBD3P0DP91 1061 aa16.11■□□□□ 0.17
NR4A1-215ENST00000550557 NUTM2DQ5VT03 806 aaPredicted RBP16.11■□□□□ 0.17
NR4A1-215ENST00000550557 IFT140Q96RY7 1462 aa16.11■□□□□ 0.17
NR4A1-215ENST00000550557 FOXD1Q16676 465 aa16.09■□□□□ 0.17
NR4A1-215ENST00000550557 HDGFL2Q7Z4V5 671 aaPredicted RBP16.09■□□□□ 0.17
NR4A1-215ENST00000550557 U2SURPO15042 1029 aaKnown RBP16.07■□□□□ 0.16
NR4A1-215ENST00000550557 PRG4Q92954 1404 aaPredicted RBP16.06■□□□□ 0.16
NR4A1-215ENST00000550557 RRBP1Q9P2E9 1410 aaKnown RBP16.06■□□□□ 0.16
NR4A1-215ENST00000550557 MYH16Q9H6N6 1097 aa16.06■□□□□ 0.16
NR4A1-215ENST00000550557 LRRC9Q6ZRR7 1453 aa16.05■□□□□ 0.16
NR4A1-215ENST00000550557 NEUROD2Q15784 382 aa16.05■□□□□ 0.16
NR4A1-215ENST00000550557 NGDNQ8NEJ9 315 aaKnown RBP16.05■□□□□ 0.16
NR4A1-215ENST00000550557 MPHOSPH9Q99550 1183 aa16.05■□□□□ 0.16
NR4A1-215ENST00000550557 LAS1LQ9Y4W2 734 aaKnown RBP16.04■□□□□ 0.16
NR4A1-215ENST00000550557 BIVM-ERCC5R4GMW8 1640 aa16.04■□□□□ 0.16
NR4A1-215ENST00000550557 NUTM2FA1L443 756 aa16.01■□□□□ 0.15
NR4A1-215ENST00000550557 ANP32EQ9BTT0 268 aa16.01■□□□□ 0.15
NR4A1-215ENST00000550557 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
NR4A1-215ENST00000550557 PHLDB1Q86UU1 1377 aa16.01■□□□□ 0.15
NR4A1-215ENST00000550557 CASKIN1Q8WXD9 1431 aa16■□□□□ 0.15
NR4A1-215ENST00000550557 CC2D1BQ5T0F9 858 aaKnown RBP16■□□□□ 0.15
NR4A1-215ENST00000550557 ANP32AP39687 249 aaKnown RBP16■□□□□ 0.15
NR4A1-215ENST00000550557 MORC1Q86VD1 984 aa15.99■□□□□ 0.15
NR4A1-215ENST00000550557 PNNQ9H307 717 aaKnown RBP15.99■□□□□ 0.15
NR4A1-215ENST00000550557 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
NR4A1-215ENST00000550557 DNMBPQ6XZF7 1577 aa15.98■□□□□ 0.15
NR4A1-215ENST00000550557 CCER2I3L3R5 266 aa15.97■□□□□ 0.15
NR4A1-215ENST00000550557 FYCO1Q9BQS8 1478 aa15.97■□□□□ 0.15
NR4A1-215ENST00000550557 EFCAB5A4FU69 1503 aa15.97■□□□□ 0.15
NR4A1-215ENST00000550557 VGFO15240 615 aaPredicted RBP15.96■□□□□ 0.15
NR4A1-215ENST00000550557 FGD6Q6ZV73 1430 aa15.96■□□□□ 0.14
NR4A1-215ENST00000550557 IRX6P78412 446 aaPredicted RBP15.95■□□□□ 0.14
NR4A1-215ENST00000550557 TIAM1Q13009 1591 aa15.93■□□□□ 0.14
NR4A1-215ENST00000550557 SNAPC4Q5SXM2 1469 aa15.93■□□□□ 0.14
NR4A1-215ENST00000550557 ROCK2O75116 1388 aaKnown RBP15.92■□□□□ 0.14
NR4A1-215ENST00000550557 TERF2IPQ9NYB0 399 aa15.92■□□□□ 0.14
NR4A1-215ENST00000550557 UPF2Q9HAU5 1272 aaKnown RBP15.92■□□□□ 0.14
NR4A1-215ENST00000550557 ABCA10Q8WWZ4 1543 aa15.92■□□□□ 0.14
NR4A1-215ENST00000550557 RTF1Q92541 710 aaKnown RBP15.92■□□□□ 0.14
NR4A1-215ENST00000550557 MYOM3Q5VTT5 1437 aa15.91■□□□□ 0.14
NR4A1-215ENST00000550557 HSPA5P11021 654 aaKnown RBP15.91■□□□□ 0.14
NR4A1-215ENST00000550557 TRAK1Q9UPV9 953 aa15.91■□□□□ 0.14
NR4A1-215ENST00000550557 MEX3CQ5U5Q3 659 aaKnown RBP15.91■□□□□ 0.14
NR4A1-215ENST00000550557 EIF3AQ14152 1382 aaKnown RBP15.9■□□□□ 0.14
NR4A1-215ENST00000550557 SYNJ2O15056 1496 aa15.9■□□□□ 0.14
NR4A1-215ENST00000550557 HSP90AA1P07900 732 aaKnown RBP15.9■□□□□ 0.14
NR4A1-215ENST00000550557 SENP3-EIF4A1A0A087X0R7 540 aa15.9■□□□□ 0.14
NR4A1-215ENST00000550557 AFAP1Q8N556 730 aa15.9■□□□□ 0.14
NR4A1-215ENST00000550557 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.88■□□□□ 0.13
NR4A1-215ENST00000550557 ZNF330Q9Y3S2 320 aaPredicted RBP15.86■□□□□ 0.13
NR4A1-215ENST00000550557 NCOA2Q15596 1464 aa15.86■□□□□ 0.13
NR4A1-215ENST00000550557 ATF3P18847 181 aa15.85■□□□□ 0.13
NR4A1-215ENST00000550557 CCDC144AA2RUR9 1427 aa15.85■□□□□ 0.13
NR4A1-215ENST00000550557 AMPHP49418 695 aa15.85■□□□□ 0.13
NR4A1-215ENST00000550557 LAMC3Q9Y6N6 1575 aa15.85■□□□□ 0.13
NR4A1-215ENST00000550557 CCDC136Q96JN2 1154 aa15.84■□□□□ 0.13
NR4A1-215ENST00000550557 UACAQ9BZF9 1416 aa15.84■□□□□ 0.13
NR4A1-215ENST00000550557 FTSJ3Q8IY81 847 aaKnown RBP15.84■□□□□ 0.13
NR4A1-215ENST00000550557 EVA1CP58658 441 aa15.84■□□□□ 0.13
NR4A1-215ENST00000550557 MAP3K1Q13233 1512 aa15.84■□□□□ 0.13
NR4A1-215ENST00000550557 L3MBTL2Q969R5 705 aa15.83■□□□□ 0.12
NR4A1-215ENST00000550557 PRDM2Q13029 1718 aa15.83■□□□□ 0.12
NR4A1-215ENST00000550557 LTV1Q96GA3 475 aaPredicted RBP15.82■□□□□ 0.12
NR4A1-215ENST00000550557 ZNF644Q9H582 1327 aaPredicted RBP15.82■□□□□ 0.12
NR4A1-215ENST00000550557 CUL7Q14999 1698 aa15.81■□□□□ 0.12
NR4A1-215ENST00000550557 GOLGA2Q08379 1002 aa15.81■□□□□ 0.12
NR4A1-215ENST00000550557 RAPGEF3O95398 923 aa15.8■□□□□ 0.12
NR4A1-215ENST00000550557 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.8■□□□□ 0.12
NR4A1-215ENST00000550557 TSHZ2Q9NRE2 1034 aa15.8■□□□□ 0.12
NR4A1-215ENST00000550557 PHF23Q9BUL5 403 aaPredicted RBP15.79■□□□□ 0.12
NR4A1-215ENST00000550557 KIF15Q9NS87 1388 aa15.79■□□□□ 0.12
NR4A1-215ENST00000550557 ARHGAP5Q13017 1502 aa15.79■□□□□ 0.12
NR4A1-215ENST00000550557 U2AF1L5P0DN76 240 aaPredicted RBP15.78■□□□□ 0.12
NR4A1-215ENST00000550557 U2AF1Q01081 240 aaKnown RBP eCLIP15.78■□□□□ 0.12
NR4A1-215ENST00000550557 PSME1Q06323 249 aa15.78■□□□□ 0.12
NR4A1-215ENST00000550557 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.78■□□□□ 0.12
NR4A1-215ENST00000550557 POGZQ7Z3K3 1410 aa15.78■□□□□ 0.12
NR4A1-215ENST00000550557 EHBP1L1Q8N3D4 1523 aa15.78■□□□□ 0.12
NR4A1-215ENST00000550557 PCF11O94913 1555 aaKnown RBP15.77■□□□□ 0.12
NR4A1-215ENST00000550557 OS9Q13438 667 aaPredicted RBP15.77■□□□□ 0.12
NR4A1-215ENST00000550557 TXNDC2Q86VQ3 553 aa15.77■□□□□ 0.12
NR4A1-215ENST00000550557 TMX4Q9H1E5 349 aaPredicted RBP15.77■□□□□ 0.12
NR4A1-215ENST00000550557 THEMISQ8N1K5 641 aaPredicted RBP15.77■□□□□ 0.12
NR4A1-215ENST00000550557 MINK1Q8N4C8 1332 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms