RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	CASKIN1	Q8WXD9	1431 aa		28.55	■■■□□ 2.16
CHMP1A-205	ENST00000548650	CDK11A	Q9UQ88	783 aa	Predicted RBP	28.54	■■■□□ 2.16
CHMP1A-205	ENST00000548650	CCDC18	Q5T9S5	1454 aa		28.53	■■■□□ 2.16
CHMP1A-205	ENST00000548650	MAGI2	Q86UL8	1455 aa		28.53	■■■□□ 2.16
CHMP1A-205	ENST00000548650	CLIP1	P30622	1438 aa		28.53	■■■□□ 2.16
CHMP1A-205	ENST00000548650	YEATS2	Q9ULM3	1422 aa		28.53	■■■□□ 2.16
CHMP1A-205	ENST00000548650	SCAPER	Q9BY12	1400 aa		28.52	■■■□□ 2.16
CHMP1A-205	ENST00000548650	RIMS1	Q86UR5	1692 aa	Known RBP	28.5	■■■□□ 2.15
CHMP1A-205	ENST00000548650	FYCO1	Q9BQS8	1478 aa		28.49	■■■□□ 2.15
CHMP1A-205	ENST00000548650	CDC42BPB	Q9Y5S2	1711 aa		28.49	■■■□□ 2.15
CHMP1A-205	ENST00000548650	ARHGAP5	Q13017	1502 aa		28.48	■■■□□ 2.15
CHMP1A-205	ENST00000548650	PREX2	Q70Z35	1606 aa		28.48	■■■□□ 2.15
CHMP1A-205	ENST00000548650	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.47	■■■□□ 2.15
CHMP1A-205	ENST00000548650	KDM5C	P41229	1560 aa		28.44	■■■□□ 2.14
CHMP1A-205	ENST00000548650	EFCAB2	Q5VUJ9	269 aa		28.43	■■■□□ 2.14
CHMP1A-205	ENST00000548650	ZNF518A	Q6AHZ1	1483 aa		28.41	■■■□□ 2.14
CHMP1A-205	ENST00000548650	CDC42BPA	Q5VT25	1732 aa		28.4	■■■□□ 2.14
CHMP1A-205	ENST00000548650	FER1L4	A9Z1Z3	1794 aa		28.39	■■■□□ 2.13
CHMP1A-205	ENST00000548650	ABCC1	P33527	1531 aa		28.38	■■■□□ 2.13
CHMP1A-205	ENST00000548650	ITSN2	Q9NZM3	1697 aa		28.36	■■■□□ 2.13
CHMP1A-205	ENST00000548650	C9orf84	Q5VXU9	1444 aa		28.35	■■■□□ 2.13
CHMP1A-205	ENST00000548650	ATP10A	O60312	1499 aa		28.35	■■■□□ 2.13
CHMP1A-205	ENST00000548650	DIP2C	Q9Y2E4	1556 aa		28.33	■■■□□ 2.12
CHMP1A-205	ENST00000548650	LMTK3	Q96Q04	1460 aa		28.32	■■■□□ 2.12
CHMP1A-205	ENST00000548650	ARHGEF12	Q9NZN5	1544 aa		28.31	■■■□□ 2.12
CHMP1A-205	ENST00000548650	ABCA6	Q8N139	1617 aa		28.3	■■■□□ 2.12
CHMP1A-205	ENST00000548650	RERE	Q9P2R6	1566 aa		28.28	■■■□□ 2.12
CHMP1A-205	ENST00000548650	AFAP1	Q8N556	730 aa		28.25	■■■□□ 2.11
CHMP1A-205	ENST00000548650	MLH3	Q9UHC1	1453 aa		28.25	■■■□□ 2.11
CHMP1A-205	ENST00000548650	SAMD9L	Q8IVG5	1584 aa		28.24	■■■□□ 2.11
CHMP1A-205	ENST00000548650	TRAPPC8	Q9Y2L5	1435 aa		28.24	■■■□□ 2.11
CHMP1A-205	ENST00000548650	MLEC	Q14165	292 aa		28.21	■■■□□ 2.11
CHMP1A-205	ENST00000548650	KIDINS220	Q9ULH0	1771 aa		28.21	■■■□□ 2.11
CHMP1A-205	ENST00000548650	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.2	■■■□□ 2.1
CHMP1A-205	ENST00000548650	SYCP2	Q9BX26	1530 aa		28.18	■■■□□ 2.1
CHMP1A-205	ENST00000548650	CEP162	Q5TB80	1403 aa		28.18	■■■□□ 2.1
CHMP1A-205	ENST00000548650	ILDR1	Q86SU0	546 aa	Predicted RBP	28.17	■■■□□ 2.1
CHMP1A-205	ENST00000548650	AGL	P35573	1532 aa		28.14	■■■□□ 2.1
CHMP1A-205	ENST00000548650	EHBP1L1	Q8N3D4	1523 aa		28.13	■■■□□ 2.09
CHMP1A-205	ENST00000548650	PREX1	Q8TCU6	1659 aa		28.12	■■■□□ 2.09
CHMP1A-205	ENST00000548650	TIAM1	Q13009	1591 aa		28.11	■■■□□ 2.09
CHMP1A-205	ENST00000548650	PLPPR3	Q6T4P5	718 aa		28.1	■■■□□ 2.09
CHMP1A-205	ENST00000548650	MTUS2	Q5JR59	1369 aa		28.1	■■■□□ 2.09
CHMP1A-205	ENST00000548650	INO80	Q9ULG1	1556 aa	Predicted RBP	28.09	■■■□□ 2.09
CHMP1A-205	ENST00000548650	MYT1L	Q9UL68	1186 aa		28.09	■■■□□ 2.09
CHMP1A-205	ENST00000548650	CCNB3	Q8WWL7	1395 aa		28.06	■■■□□ 2.08
CHMP1A-205	ENST00000548650	PLEKHH2	Q8IVE3	1493 aa		28.06	■■■□□ 2.08
CHMP1A-205	ENST00000548650	C3	P01024	1663 aa		28.05	■■■□□ 2.08
CHMP1A-205	ENST00000548650	KIAA1107	Q9UPP5	1409 aa		28.05	■■■□□ 2.08
CHMP1A-205	ENST00000548650	ATP7A	Q04656	1500 aa		28.04	■■■□□ 2.08
CHMP1A-205	ENST00000548650	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.04	■■■□□ 2.08
CHMP1A-205	ENST00000548650	HSPA2	P54652	639 aa		28.03	■■■□□ 2.08
CHMP1A-205	ENST00000548650	PLXNC1	O60486	1568 aa		28.01	■■■□□ 2.07
CHMP1A-205	ENST00000548650	CFDP1	Q9UEE9	299 aa	Predicted RBP	28	■■■□□ 2.07
CHMP1A-205	ENST00000548650	CEBPA	P49715	358 aa	Predicted RBP	27.98	■■■□□ 2.07
CHMP1A-205	ENST00000548650	SUPT6H	Q7KZ85	1726 aa	Known RBP	27.98	■■■□□ 2.07
CHMP1A-205	ENST00000548650	SPAG9	O60271	1321 aa	Known RBP	27.96	■■■□□ 2.07
CHMP1A-205	ENST00000548650	HNRNPM	P52272	730 aa	Known RBP eCLIP	27.96	■■■□□ 2.07
CHMP1A-205	ENST00000548650	MROH2A	A6NES4	1674 aa		27.94	■■■□□ 2.06
CHMP1A-205	ENST00000548650	SETD1B	Q9UPS6	1966 aa	Known RBP	27.94	■■■□□ 2.06
CHMP1A-205	ENST00000548650	ADGB	Q8N7X0	1667 aa		27.93	■■■□□ 2.06
CHMP1A-205	ENST00000548650	CNTLN	Q9NXG0	1405 aa		27.92	■■■□□ 2.06
CHMP1A-205	ENST00000548650	NCOA2	Q15596	1464 aa		27.91	■■■□□ 2.06
CHMP1A-205	ENST00000548650	MBD5	Q9P267	1494 aa		27.91	■■■□□ 2.06
CHMP1A-205	ENST00000548650	UHRF1BP1	Q6BDS2	1440 aa		27.91	■■■□□ 2.06
CHMP1A-205	ENST00000548650	A2M	P01023	1474 aa		27.89	■■■□□ 2.06
CHMP1A-205	ENST00000548650	STRC	Q7RTU9	1775 aa		27.88	■■■□□ 2.05
CHMP1A-205	ENST00000548650	VPS8	Q8N3P4	1428 aa		27.88	■■■□□ 2.05
CHMP1A-205	ENST00000548650	ZNF644	Q9H582	1327 aa	Predicted RBP	27.88	■■■□□ 2.05
CHMP1A-205	ENST00000548650	CLTC	Q00610	1675 aa	Known RBP	27.85	■■■□□ 2.05
CHMP1A-205	ENST00000548650	CAMSAP2	Q08AD1	1489 aa		27.84	■■■□□ 2.05
CHMP1A-205	ENST00000548650	FBXO41	Q8TF61	875 aa		27.82	■■■□□ 2.04
CHMP1A-205	ENST00000548650	ESF1	Q9H501	851 aa	Known RBP	27.82	■■■□□ 2.04
CHMP1A-205	ENST00000548650	LOC105371045	A0A1W2PR82	267 aa		27.8	■■■□□ 2.04
CHMP1A-205	ENST00000548650	RTEL1-TNFRSF6B	F6WH68	1400 aa		27.8	■■■□□ 2.04
CHMP1A-205	ENST00000548650	CCDC141	Q6ZP82	1450 aa		27.8	■■■□□ 2.04
CHMP1A-205	ENST00000548650	LRRC9	Q6ZRR7	1453 aa		27.79	■■■□□ 2.04
CHMP1A-205	ENST00000548650	NPAT	Q14207	1427 aa		27.78	■■■□□ 2.04
CHMP1A-205	ENST00000548650	ARHGEF5	Q12774	1597 aa		27.76	■■■□□ 2.03
CHMP1A-205	ENST00000548650	MAP3K1	Q13233	1512 aa		27.75	■■■□□ 2.03
CHMP1A-205	ENST00000548650	MYO3A	Q8NEV4	1616 aa		27.74	■■■□□ 2.03
CHMP1A-205	ENST00000548650	ZNF142	P52746	1687 aa	Predicted RBP	27.74	■■■□□ 2.03
CHMP1A-205	ENST00000548650	ZMYM3	Q14202	1370 aa		27.73	■■■□□ 2.03
CHMP1A-205	ENST00000548650	PTPRK	Q15262	1439 aa		27.67	■■■□□ 2.02
CHMP1A-205	ENST00000548650	NCOA1	Q15788	1441 aa		27.67	■■■□□ 2.02
CHMP1A-205	ENST00000548650	DHX29	Q7Z478	1369 aa	Known RBP	27.67	■■■□□ 2.02
CHMP1A-205	ENST00000548650	GGT6	Q6P531	493 aa		27.65	■■■□□ 2.02
CHMP1A-205	ENST00000548650	FAM135A	Q9P2D6	1515 aa		27.65	■■■□□ 2.02
CHMP1A-205	ENST00000548650	PTPRT	O14522	1441 aa		27.65	■■■□□ 2.02
CHMP1A-205	ENST00000548650	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	27.65	■■■□□ 2.02
CHMP1A-205	ENST00000548650	CAMSAP1	Q5T5Y3	1602 aa		27.64	■■■□□ 2.02
CHMP1A-205	ENST00000548650	MAST1	Q9Y2H9	1570 aa		27.64	■■■□□ 2.01
CHMP1A-205	ENST00000548650	CERK	Q8TCT0	537 aa		27.62	■■■□□ 2.01
CHMP1A-205	ENST00000548650	DMRT2	Q9Y5R5	561 aa		27.62	■■■□□ 2.01
CHMP1A-205	ENST00000548650	KDM5D	Q9BY66	1539 aa		27.62	■■■□□ 2.01
CHMP1A-205	ENST00000548650	RSPH4A	Q5TD94	716 aa		27.61	■■■□□ 2.01
CHMP1A-205	ENST00000548650	PPP6R1	Q9UPN7	881 aa		27.61	■■■□□ 2.01
CHMP1A-205	ENST00000548650	MYOM3	Q5VTT5	1437 aa		27.6	■■■□□ 2.01
CHMP1A-205	ENST00000548650	KANK4	Q5T7N3	995 aa	Predicted RBP	27.6	■■■□□ 2.01
CHMP1A-205	ENST00000548650	MIA2	Q96PC5	1412 aa		27.58	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms