RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	NISCH	Q9Y2I1	1504 aa		43.69	■■■■■ 4.59
CHMP1A-205	ENST00000548650	CCDC180	Q9P1Z9	1646 aa		39.25	■■■■□ 3.87
CHMP1A-205	ENST00000548650	ABCC9	O60706	1549 aa		38.93	■■■■□ 3.82
CHMP1A-205	ENST00000548650	RB1CC1	Q8TDY2	1594 aa		37.18	■■■■□ 3.54
CHMP1A-205	ENST00000548650	NACAD	O15069	1562 aa		36.97	■■■■□ 3.51
CHMP1A-205	ENST00000548650	MYO15B	Q96JP2	1530 aa		36.55	■■■■□ 3.44
CHMP1A-205	ENST00000548650	DCAF8L2	P0C7V8	631 aa		36.54	■■■■□ 3.44
CHMP1A-205	ENST00000548650	UNC13A	Q9UPW8	1703 aa		36.46	■■■■□ 3.43
CHMP1A-205	ENST00000548650	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.31	■■■■□ 3.4
CHMP1A-205	ENST00000548650	DNAJC5B	Q9UF47	199 aa		36.27	■■■■□ 3.4
CHMP1A-205	ENST00000548650	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.16	■■■■□ 3.38
CHMP1A-205	ENST00000548650	DCAF1	Q9Y4B6	1507 aa		36.15	■■■■□ 3.38
CHMP1A-205	ENST00000548650	BICRA	Q9NZM4	1560 aa		36.15	■■■■□ 3.38
CHMP1A-205	ENST00000548650	SCRIB	Q14160	1630 aa		35.71	■■■■□ 3.31
CHMP1A-205	ENST00000548650	SHROOM4	Q9ULL8	1493 aa		35.68	■■■■□ 3.3
CHMP1A-205	ENST00000548650	CC2D2A	Q9P2K1	1620 aa		35.24	■■■■□ 3.23
CHMP1A-205	ENST00000548650	EIF4G1	Q04637	1599 aa	Known RBP	35.21	■■■■□ 3.23
CHMP1A-205	ENST00000548650	CECR2	Q9BXF3	1484 aa		35.05	■■■■□ 3.2
CHMP1A-205	ENST00000548650	SMARCA4	P51532	1647 aa		34.11	■■■■□ 3.05
CHMP1A-205	ENST00000548650	NCAPD3	P42695	1498 aa		34.08	■■■■□ 3.05
CHMP1A-205	ENST00000548650	ATAD2B	Q9ULI0	1458 aa		34.02	■■■■□ 3.04
CHMP1A-205	ENST00000548650	SMARCA2	P51531	1590 aa		33.97	■■■■□ 3.03
CHMP1A-205	ENST00000548650	HMGXB3	Q12766	1538 aa		33.94	■■■■□ 3.02
CHMP1A-205	ENST00000548650	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.93	■■■■□ 3.02
CHMP1A-205	ENST00000548650	PEG3	Q9GZU2	1588 aa		33.79	■■■■□ 3
CHMP1A-205	ENST00000548650	BAZ1B	Q9UIG0	1483 aa	Known RBP	33.7	■■■□□ 2.99
CHMP1A-205	ENST00000548650	MROH2B	Q7Z745	1585 aa		33.68	■■■□□ 2.98
CHMP1A-205	ENST00000548650	ERCC6	Q03468	1493 aa		33.58	■■■□□ 2.97
CHMP1A-205	ENST00000548650	CUX2	O14529	1486 aa		33.51	■■■□□ 2.96
CHMP1A-205	ENST00000548650	NES	P48681	1621 aa		33.51	■■■□□ 2.96
CHMP1A-205	ENST00000548650	LAMC3	Q9Y6N6	1575 aa		33.34	■■■□□ 2.93
CHMP1A-205	ENST00000548650	WIZ	O95785	1651 aa		33.3	■■■□□ 2.92
CHMP1A-205	ENST00000548650	THOC2	Q8NI27	1593 aa	Known RBP	33.25	■■■□□ 2.91
CHMP1A-205	ENST00000548650	KIF21A	Q7Z4S6	1674 aa		33.18	■■■□□ 2.9
CHMP1A-205	ENST00000548650	DNAJC5	Q9H3Z4	198 aa		33.16	■■■□□ 2.9
CHMP1A-205	ENST00000548650	PDS5B	Q9NTI5	1447 aa		33.05	■■■□□ 2.88
CHMP1A-205	ENST00000548650	CADPS	Q9ULU8	1353 aa		33.02	■■■□□ 2.88
CHMP1A-205	ENST00000548650	RSF1	Q96T23	1441 aa	Predicted RBP	33	■■■□□ 2.87
CHMP1A-205	ENST00000548650	TOP2A	P11388	1531 aa	Known RBP	32.91	■■■□□ 2.86
CHMP1A-205	ENST00000548650	MRC2	Q9UBG0	1479 aa		32.83	■■■□□ 2.85
CHMP1A-205	ENST00000548650	WDR62	O43379	1518 aa		32.8	■■■□□ 2.84
CHMP1A-205	ENST00000548650	CFTR	P13569	1480 aa		32.74	■■■□□ 2.83
CHMP1A-205	ENST00000548650	CEP164	Q9UPV0	1460 aa		32.73	■■■□□ 2.83
CHMP1A-205	ENST00000548650	FANCD2	Q9BXW9	1451 aa		32.68	■■■□□ 2.82
CHMP1A-205	ENST00000548650	PRDM2	Q13029	1718 aa		32.59	■■■□□ 2.81
CHMP1A-205	ENST00000548650	CCDC88B	A6NC98	1476 aa		32.45	■■■□□ 2.79
CHMP1A-205	ENST00000548650	URB2	Q14146	1524 aa	Known RBP	32.45	■■■□□ 2.78
CHMP1A-205	ENST00000548650	TOPBP1	Q92547	1522 aa		32.11	■■■□□ 2.73
CHMP1A-205	ENST00000548650	IFT140	Q96RY7	1462 aa		32.05	■■■□□ 2.72
CHMP1A-205	ENST00000548650	DNMBP	Q6XZF7	1577 aa		32.05	■■■□□ 2.72
CHMP1A-205	ENST00000548650	ABCC8	Q09428	1581 aa		32.01	■■■□□ 2.71
CHMP1A-205	ENST00000548650	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32	■■■□□ 2.71
CHMP1A-205	ENST00000548650	EIF4G3	O43432	1585 aa	Known RBP	31.91	■■■□□ 2.7
CHMP1A-205	ENST00000548650	TARBP1	Q13395	1621 aa	Known RBP	31.87	■■■□□ 2.69
CHMP1A-205	ENST00000548650	OSCAR	Q8IYS5	282 aa		31.85	■■■□□ 2.69
CHMP1A-205	ENST00000548650	POLA1	P09884	1462 aa	Predicted RBP	31.8	■■■□□ 2.68
CHMP1A-205	ENST00000548650	TRIM41	Q8WV44	630 aa		31.74	■■■□□ 2.67
CHMP1A-205	ENST00000548650	AQR	O60306	1485 aa	Known RBP eCLIP	31.67	■■■□□ 2.66	2e-16	■■■■■ 32.6
CHMP1A-205	ENST00000548650	CHD1	O14646	1710 aa		31.66	■■■□□ 2.66
CHMP1A-205	ENST00000548650	CUX1	P39880	1505 aa		31.65	■■■□□ 2.66
CHMP1A-205	ENST00000548650	RAD54L2	Q9Y4B4	1467 aa		31.64	■■■□□ 2.66
CHMP1A-205	ENST00000548650	FGD5	Q6ZNL6	1462 aa		31.63	■■■□□ 2.65
CHMP1A-205	ENST00000548650	RIMBP3C	A6NJZ7	1639 aa		31.61	■■■□□ 2.65
CHMP1A-205	ENST00000548650	RIMBP3B	A6NNM3	1639 aa		31.61	■■■□□ 2.65
CHMP1A-205	ENST00000548650	RIMBP3	Q9UFD9	1639 aa		31.61	■■■□□ 2.65
CHMP1A-205	ENST00000548650	WDR97	A6NE52	1622 aa		31.57	■■■□□ 2.64
CHMP1A-205	ENST00000548650	SOGA1	O94964	1423 aa		31.57	■■■□□ 2.64
CHMP1A-205	ENST00000548650	ARHGEF11	O15085	1522 aa		31.51	■■■□□ 2.63
CHMP1A-205	ENST00000548650	SUPT5H	O00267	1087 aa	Known RBP	31.51	■■■□□ 2.63
CHMP1A-205	ENST00000548650	TDRD9	Q8NDG6	1382 aa	Known RBP	31.48	■■■□□ 2.63
CHMP1A-205	ENST00000548650	SNAPC4	Q5SXM2	1469 aa		31.42	■■■□□ 2.62
CHMP1A-205	ENST00000548650	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.35	■■■□□ 2.61
CHMP1A-205	ENST00000548650	PBRM1	Q86U86	1689 aa		31.35	■■■□□ 2.61
CHMP1A-205	ENST00000548650	GRIN2B	Q13224	1484 aa		31.33	■■■□□ 2.61
CHMP1A-205	ENST00000548650	FBLN2	P98095	1184 aa		31.31	■■■□□ 2.6
CHMP1A-205	ENST00000548650	ABCA5	Q8WWZ7	1642 aa		31.3	■■■□□ 2.6
CHMP1A-205	ENST00000548650	ABCA10	Q8WWZ4	1543 aa		31.28	■■■□□ 2.6
CHMP1A-205	ENST00000548650	CLASP1	Q7Z460	1538 aa		31.27	■■■□□ 2.6
CHMP1A-205	ENST00000548650	BIVM-ERCC5	R4GMW8	1640 aa		31.24	■■■□□ 2.59
CHMP1A-205	ENST00000548650	SYNJ2	O15056	1496 aa		31.23	■■■□□ 2.59
CHMP1A-205	ENST00000548650	GAPVD1	Q14C86	1478 aa		31.23	■■■□□ 2.59
CHMP1A-205	ENST00000548650	SYNJ1	O43426	1573 aa		31.22	■■■□□ 2.59
CHMP1A-205	ENST00000548650	ARAP1	Q96P48	1450 aa		31.22	■■■□□ 2.59
CHMP1A-205	ENST00000548650	TOP2B	Q02880	1626 aa		31.2	■■■□□ 2.59
CHMP1A-205	ENST00000548650	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.13	■■■□□ 2.57
CHMP1A-205	ENST00000548650	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.13	■■■□□ 2.57
CHMP1A-205	ENST00000548650	CYB5RL	Q6IPT4	315 aa		31.08	■■■□□ 2.57
CHMP1A-205	ENST00000548650	ADAMTS12	P58397	1594 aa		31.05	■■■□□ 2.56
CHMP1A-205	ENST00000548650	GRIN2A	Q12879	1464 aa		30.95	■■■□□ 2.55
CHMP1A-205	ENST00000548650	ERICH3	Q5RHP9	1530 aa		30.9	■■■□□ 2.54
CHMP1A-205	ENST00000548650	CEP170	Q5SW79	1584 aa		30.88	■■■□□ 2.53
CHMP1A-205	ENST00000548650	NUP160	Q12769	1436 aa		30.86	■■■□□ 2.53
CHMP1A-205	ENST00000548650	FHAD1	B1AJZ9	1412 aa		30.84	■■■□□ 2.53
CHMP1A-205	ENST00000548650	SHROOM2	Q13796	1616 aa		30.77	■■■□□ 2.52
CHMP1A-205	ENST00000548650	ERCC6L2	Q5T890	1561 aa		30.77	■■■□□ 2.52
CHMP1A-205	ENST00000548650	TRH	P20396	242 aa	Predicted RBP	30.65	■■■□□ 2.5
CHMP1A-205	ENST00000548650	RUSC2	Q8N2Y8	1516 aa		30.62	■■■□□ 2.49
CHMP1A-205	ENST00000548650	CUL7	Q14999	1698 aa		30.53	■■■□□ 2.48
CHMP1A-205	ENST00000548650	KIF27	Q86VH2	1401 aa		30.5	■■■□□ 2.47
CHMP1A-205	ENST00000548650	PRG4	Q92954	1404 aa	Predicted RBP	30.47	■■■□□ 2.47

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms