RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CASKIN1Q8WXD9 1431 aa20.68■□□□□ 0.9
CUX1-211ENST00000546411 PPM1GO15355 546 aaPredicted RBP20.67■□□□□ 0.9
CUX1-211ENST00000546411 GGT6Q6P531 493 aa20.67■□□□□ 0.9
CUX1-211ENST00000546411 POLA1P09884 1462 aaPredicted RBP20.67■□□□□ 0.9
CUX1-211ENST00000546411 NCOA2Q15596 1464 aa20.67■□□□□ 0.9
CUX1-211ENST00000546411 CDCA8Q53HL2 280 aa20.66■□□□□ 0.9
CUX1-211ENST00000546411 HMGXB3Q12766 1538 aa20.65■□□□□ 0.9
CUX1-211ENST00000546411 UACAQ9BZF9 1416 aa20.63■□□□□ 0.89
CUX1-211ENST00000546411 RGS3P49796 1198 aa20.63■□□□□ 0.89
CUX1-211ENST00000546411 UNC13AQ9UPW8 1703 aa20.63■□□□□ 0.89
CUX1-211ENST00000546411 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
CUX1-211ENST00000546411 EFCAB2Q5VUJ9 269 aa20.62■□□□□ 0.89
CUX1-211ENST00000546411 PLEKHG5O94827 1062 aa20.61■□□□□ 0.89
CUX1-211ENST00000546411 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
CUX1-211ENST00000546411 WASHC2AQ641Q2 1341 aa20.61■□□□□ 0.89
CUX1-211ENST00000546411 FRAT1Q92837 279 aaPredicted RBP20.61■□□□□ 0.89
CUX1-211ENST00000546411 KIF3BO15066 747 aa20.59■□□□□ 0.89
CUX1-211ENST00000546411 ARXQ96QS3 562 aa20.59■□□□□ 0.89
CUX1-211ENST00000546411 TIAM1Q13009 1591 aa20.56■□□□□ 0.88
CUX1-211ENST00000546411 KTN1Q86UP2 1357 aaKnown RBP20.56■□□□□ 0.88
CUX1-211ENST00000546411 UPF2Q9HAU5 1272 aaKnown RBP20.56■□□□□ 0.88
CUX1-211ENST00000546411 LAS1LQ9Y4W2 734 aaKnown RBP20.55■□□□□ 0.88
CUX1-211ENST00000546411 USP47Q96K76 1375 aa20.55■□□□□ 0.88
CUX1-211ENST00000546411 NUTM2DQ5VT03 806 aaPredicted RBP20.54■□□□□ 0.88
CUX1-211ENST00000546411 FYCO1Q9BQS8 1478 aa20.54■□□□□ 0.88
CUX1-211ENST00000546411 KIF7Q2M1P5 1343 aa20.54■□□□□ 0.88
CUX1-211ENST00000546411 PTPRGP23470 1445 aa20.53■□□□□ 0.88
CUX1-211ENST00000546411 RCAN3Q9UKA8 241 aa20.53■□□□□ 0.88
CUX1-211ENST00000546411 NBPF8Q3BBV2 869 aa20.53■□□□□ 0.88
CUX1-211ENST00000546411 STK26Q9P289 416 aa20.53■□□□□ 0.88
CUX1-211ENST00000546411 WDR97A6NE52 1622 aa20.52■□□□□ 0.87
CUX1-211ENST00000546411 PEG3Q9GZU2 1588 aa20.52■□□□□ 0.87
CUX1-211ENST00000546411 U2SURPO15042 1029 aaKnown RBP20.51■□□□□ 0.87
CUX1-211ENST00000546411 NUDCQ9Y266 331 aa20.51■□□□□ 0.87
CUX1-211ENST00000546411 MLECQ14165 292 aa20.51■□□□□ 0.87
CUX1-211ENST00000546411 CFAP53Q96M91 514 aa20.51■□□□□ 0.87
CUX1-211ENST00000546411 POGKQ9P215 609 aa20.51■□□□□ 0.87
CUX1-211ENST00000546411 CCDC184Q52MB2 194 aa20.5■□□□□ 0.87
CUX1-211ENST00000546411 HSP90AA1P07900 732 aaKnown RBP20.49■□□□□ 0.87
CUX1-211ENST00000546411 RALBP1Q15311 655 aa20.49■□□□□ 0.87
CUX1-211ENST00000546411 SPAG9O60271 1321 aaKnown RBP20.49■□□□□ 0.87
CUX1-211ENST00000546411 PANK3Q9H999 370 aa20.48■□□□□ 0.87
CUX1-211ENST00000546411 CCDC7Q96M83 1385 aa20.48■□□□□ 0.87
CUX1-211ENST00000546411 NLRP13Q86W25 1043 aa20.48■□□□□ 0.87
CUX1-211ENST00000546411 NOP58Q9Y2X3 529 aaKnown RBP20.47■□□□□ 0.87
CUX1-211ENST00000546411 KANK1Q14678 1352 aa20.47■□□□□ 0.87
CUX1-211ENST00000546411 CCDC146Q8IYE0 955 aa20.47■□□□□ 0.87
CUX1-211ENST00000546411 MORC1Q86VD1 984 aa20.45■□□□□ 0.86
CUX1-211ENST00000546411 CCDC144AA2RUR9 1427 aa20.44■□□□□ 0.86
CUX1-211ENST00000546411 SRPK2P78362 688 aaKnown RBP20.44■□□□□ 0.86
CUX1-211ENST00000546411 PRDM2Q13029 1718 aa20.44■□□□□ 0.86
CUX1-211ENST00000546411 PLIN1O60240 522 aa20.44■□□□□ 0.86
CUX1-211ENST00000546411 ARID4BQ4LE39 1312 aaPredicted RBP20.43■□□□□ 0.86
CUX1-211ENST00000546411 RSPH4AQ5TD94 716 aa20.42■□□□□ 0.86
CUX1-211ENST00000546411 HFM1A2PYH4 1435 aa20.42■□□□□ 0.86
CUX1-211ENST00000546411 PRG4Q92954 1404 aaPredicted RBP20.42■□□□□ 0.86
CUX1-211ENST00000546411 GRIN2BQ13224 1484 aa20.41■□□□□ 0.86
CUX1-211ENST00000546411 KIF15Q9NS87 1388 aa20.41■□□□□ 0.86
CUX1-211ENST00000546411 FTSJ3Q8IY81 847 aaKnown RBP20.41■□□□□ 0.86
CUX1-211ENST00000546411 PCF11O94913 1555 aaKnown RBP20.4■□□□□ 0.86
CUX1-211ENST00000546411 NAIPQ13075 1403 aa20.4■□□□□ 0.86
CUX1-211ENST00000546411 ANKRD50Q9ULJ7 1429 aa20.4■□□□□ 0.86
CUX1-211ENST00000546411 ZBED9Q6R2W3 1325 aa20.4■□□□□ 0.86
CUX1-211ENST00000546411 TRAK1Q9UPV9 953 aa20.39■□□□□ 0.85
CUX1-211ENST00000546411 ZBTB7CA1YPR0 619 aa20.38■□□□□ 0.85
CUX1-211ENST00000546411 CDK13Q14004 1512 aaKnown RBP20.38■□□□□ 0.85
CUX1-211ENST00000546411 MAPK8IP3Q9UPT6 1336 aa20.38■□□□□ 0.85
CUX1-211ENST00000546411 SOX12O15370 315 aa20.38■□□□□ 0.85
CUX1-211ENST00000546411 C14orf37Q86TY3 774 aa20.38■□□□□ 0.85
CUX1-211ENST00000546411 DNMBPQ6XZF7 1577 aa20.37■□□□□ 0.85
CUX1-211ENST00000546411 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
CUX1-211ENST00000546411 MYBBP1AQ9BQG0 1328 aaKnown RBP20.37■□□□□ 0.85
CUX1-211ENST00000546411 ERICH6BQ5W0A0 696 aa20.37■□□□□ 0.85
CUX1-211ENST00000546411 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
CUX1-211ENST00000546411 C11orf95C9JLR9 678 aaPredicted RBP20.36■□□□□ 0.85
CUX1-211ENST00000546411 NBPF1Q3BBV0 1214 aa20.35■□□□□ 0.85
CUX1-211ENST00000546411 EXOC6Q8TAG9 804 aa20.34■□□□□ 0.85
CUX1-211ENST00000546411 CNTLNQ9NXG0 1405 aa20.33■□□□□ 0.85
CUX1-211ENST00000546411 U2AF1L5P0DN76 240 aaPredicted RBP20.33■□□□□ 0.84
CUX1-211ENST00000546411 U2AF1Q01081 240 aaKnown RBP eCLIP20.33■□□□□ 0.845e-6■□□□□ 11.2
CUX1-211ENST00000546411 AFAP1Q8N556 730 aa20.33■□□□□ 0.84
CUX1-211ENST00000546411 RRP7AQ9Y3A4 280 aaKnown RBP20.31■□□□□ 0.84
CUX1-211ENST00000546411 DDRGK1Q96HY6 314 aa20.31■□□□□ 0.84
CUX1-211ENST00000546411 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
CUX1-211ENST00000546411 CLUAP1Q96AJ1 413 aa20.29■□□□□ 0.84
CUX1-211ENST00000546411 WASHC2CQ9Y4E1 1318 aa20.29■□□□□ 0.84
CUX1-211ENST00000546411 GOLGA2Q08379 1002 aa20.28■□□□□ 0.84
CUX1-211ENST00000546411 EIF5BO60841 1220 aaKnown RBP20.28■□□□□ 0.84
CUX1-211ENST00000546411 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
CUX1-211ENST00000546411 SNAPC4Q5SXM2 1469 aa20.25■□□□□ 0.83
CUX1-211ENST00000546411 URB2Q14146 1524 aaKnown RBP20.25■□□□□ 0.83
CUX1-211ENST00000546411 EHBP1L1Q8N3D4 1523 aa20.25■□□□□ 0.83
CUX1-211ENST00000546411 MYH16Q9H6N6 1097 aa20.25■□□□□ 0.83
CUX1-211ENST00000546411 MRC2Q9UBG0 1479 aa20.23■□□□□ 0.83
CUX1-211ENST00000546411 BCL2L13Q9BXK5 485 aa20.23■□□□□ 0.83
CUX1-211ENST00000546411 RTN4Q9NQC3 1192 aaKnown RBP20.23■□□□□ 0.83
CUX1-211ENST00000546411 PTPRKQ15262 1439 aa20.23■□□□□ 0.83
CUX1-211ENST00000546411 CDCA7LQ96GN5 454 aa20.23■□□□□ 0.83
CUX1-211ENST00000546411 APAF1O14727 1248 aa20.22■□□□□ 0.83
CUX1-211ENST00000546411 MIA2Q96PC5 1412 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms