RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 HECW1Q76N89 1606 aa14.82□□□□□ -0.04
YBX3-215ENST00000544504 DMRT2Q9Y5R5 561 aa14.82□□□□□ -0.04
YBX3-215ENST00000544504 MAP3K1Q13233 1512 aa14.82□□□□□ -0.04
YBX3-215ENST00000544504 RAPGEF6Q8TEU7 1601 aa14.81□□□□□ -0.04
YBX3-215ENST00000544504 RICTORQ6R327 1708 aa14.8□□□□□ -0.04
YBX3-215ENST00000544504 YEATS2Q9ULM3 1422 aa14.8□□□□□ -0.04
YBX3-215ENST00000544504 CCDC18Q5T9S5 1454 aa14.8□□□□□ -0.04
YBX3-215ENST00000544504 MAGI2Q86UL8 1455 aa14.8□□□□□ -0.04
YBX3-215ENST00000544504 ZMYM4Q5VZL5 1548 aa14.8□□□□□ -0.04
YBX3-215ENST00000544504 TTC37Q6PGP7 1564 aa14.79□□□□□ -0.04
YBX3-215ENST00000544504 SPATA31D1Q6ZQQ2 1576 aa14.79□□□□□ -0.04
YBX3-215ENST00000544504 ZFYVE16Q7Z3T8 1539 aa14.79□□□□□ -0.04
YBX3-215ENST00000544504 ATP1B4Q9UN42 357 aaPredicted RBP14.78□□□□□ -0.04
YBX3-215ENST00000544504 CFAP74Q9C0B2 1584 aa14.77□□□□□ -0.04
YBX3-215ENST00000544504 MLECQ14165 292 aa14.77□□□□□ -0.05
YBX3-215ENST00000544504 PLEKHD1A6NEE1 506 aa14.76□□□□□ -0.05
YBX3-215ENST00000544504 NUP153P49790 1475 aaKnown RBP14.76□□□□□ -0.05
YBX3-215ENST00000544504 SIGLEC1Q9BZZ2 1709 aa14.74□□□□□ -0.05
YBX3-215ENST00000544504 PREX1Q8TCU6 1659 aa14.74□□□□□ -0.05
YBX3-215ENST00000544504 TIAM1Q13009 1591 aa14.73□□□□□ -0.05
YBX3-215ENST00000544504 FER1L4A9Z1Z3 1794 aa14.73□□□□□ -0.05
YBX3-215ENST00000544504 CDK11AQ9UQ88 783 aaPredicted RBP14.73□□□□□ -0.05
YBX3-215ENST00000544504 ARHGEF12Q9NZN5 1544 aa14.72□□□□□ -0.05
YBX3-215ENST00000544504 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.71□□□□□ -0.06
YBX3-215ENST00000544504 UHRF1BP1Q6BDS2 1440 aa14.7□□□□□ -0.06
YBX3-215ENST00000544504 CEBPAP49715 358 aaPredicted RBP14.7□□□□□ -0.06
YBX3-215ENST00000544504 PTPRTO14522 1441 aa14.69□□□□□ -0.06
YBX3-215ENST00000544504 ATP10AO60312 1499 aa14.69□□□□□ -0.06
YBX3-215ENST00000544504 C9orf84Q5VXU9 1444 aa14.68□□□□□ -0.06
YBX3-215ENST00000544504 SCAPERQ9BY12 1400 aa14.68□□□□□ -0.06
YBX3-215ENST00000544504 STRCQ7RTU9 1775 aa14.68□□□□□ -0.06
YBX3-215ENST00000544504 MTUS2Q5JR59 1369 aa14.68□□□□□ -0.06
YBX3-215ENST00000544504 IQSEC2Q5JU85 1478 aa14.67□□□□□ -0.06
YBX3-215ENST00000544504 LRRC9Q6ZRR7 1453 aa14.67□□□□□ -0.06
YBX3-215ENST00000544504 LRRIQ1Q96JM4 1722 aa14.66□□□□□ -0.06
YBX3-215ENST00000544504 EHBP1L1Q8N3D4 1523 aa14.66□□□□□ -0.06
YBX3-215ENST00000544504 CDK13Q14004 1512 aaKnown RBP14.65□□□□□ -0.06
YBX3-215ENST00000544504 PLCH2O75038 1416 aa14.64□□□□□ -0.07
YBX3-215ENST00000544504 LTBP4Q8N2S1 1624 aa14.63□□□□□ -0.07
YBX3-215ENST00000544504 TROQ12816 1431 aaPredicted RBP14.61□□□□□ -0.07
YBX3-215ENST00000544504 KANK4Q5T7N3 995 aaPredicted RBP14.61□□□□□ -0.07
YBX3-215ENST00000544504 EFCAB2Q5VUJ9 269 aa14.6□□□□□ -0.07
YBX3-215ENST00000544504 SUPT6HQ7KZ85 1726 aaKnown RBP14.59□□□□□ -0.07
YBX3-215ENST00000544504 ZNF518AQ6AHZ1 1483 aa14.58□□□□□ -0.08
YBX3-215ENST00000544504 SETD1BQ9UPS6 1966 aaKnown RBP14.57□□□□□ -0.08
YBX3-215ENST00000544504 PPARGC1BQ86YN6 1023 aaKnown RBP14.57□□□□□ -0.08
YBX3-215ENST00000544504 TRAPPC8Q9Y2L5 1435 aa14.57□□□□□ -0.08
YBX3-215ENST00000544504 ESF1Q9H501 851 aaKnown RBP14.56□□□□□ -0.08
YBX3-215ENST00000544504 NCOA1Q15788 1441 aa14.56□□□□□ -0.08
YBX3-215ENST00000544504 KIF14Q15058 1648 aa14.55□□□□□ -0.08
YBX3-215ENST00000544504 NCOA2Q15596 1464 aa14.54□□□□□ -0.08
YBX3-215ENST00000544504 REREQ9P2R6 1566 aa14.54□□□□□ -0.08
YBX3-215ENST00000544504 KDM5CP41229 1560 aa14.53□□□□□ -0.08
YBX3-215ENST00000544504 UBAP1LF5GYI3 381 aa14.53□□□□□ -0.08
YBX3-215ENST00000544504 TRIM26Q12899 539 aaPredicted RBP14.53□□□□□ -0.08
YBX3-215ENST00000544504 AFAP1Q8N556 730 aa14.53□□□□□ -0.08
YBX3-215ENST00000544504 MYT1LQ9UL68 1186 aa14.53□□□□□ -0.08
YBX3-215ENST00000544504 C3P01024 1663 aa14.52□□□□□ -0.09
YBX3-215ENST00000544504 DIP2CQ9Y2E4 1556 aa14.51□□□□□ -0.09
YBX3-215ENST00000544504 AGLP35573 1532 aa14.5□□□□□ -0.09
YBX3-215ENST00000544504 MYOM3Q5VTT5 1437 aa14.49□□□□□ -0.09
YBX3-215ENST00000544504 CNTLNQ9NXG0 1405 aa14.49□□□□□ -0.09
YBX3-215ENST00000544504 MYO5CQ9NQX4 1742 aa14.49□□□□□ -0.09
YBX3-215ENST00000544504 CCNB3Q8WWL7 1395 aa14.49□□□□□ -0.09
YBX3-215ENST00000544504 MLH3Q9UHC1 1453 aa14.49□□□□□ -0.09
YBX3-215ENST00000544504 ITSN2Q9NZM3 1697 aa14.48□□□□□ -0.09
YBX3-215ENST00000544504 MIA2Q96PC5 1412 aa14.48□□□□□ -0.09
YBX3-215ENST00000544504 CAMSAP1Q5T5Y3 1602 aa14.48□□□□□ -0.09
YBX3-215ENST00000544504 ZNF335Q9H4Z2 1342 aaPredicted RBP14.47□□□□□ -0.09
YBX3-215ENST00000544504 ARHGAP5Q13017 1502 aa14.47□□□□□ -0.09
YBX3-215ENST00000544504 NPATQ14207 1427 aa14.47□□□□□ -0.09
YBX3-215ENST00000544504 RRBP1Q9P2E9 1410 aaKnown RBP14.47□□□□□ -0.09
YBX3-215ENST00000544504 ABCA6Q8N139 1617 aa14.45□□□□□ -0.1
YBX3-215ENST00000544504 FGD6Q6ZV73 1430 aa14.45□□□□□ -0.1
YBX3-215ENST00000544504 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.45□□□□□ -0.1
YBX3-215ENST00000544504 NCKAP5LQ9HCH0 1330 aa14.44□□□□□ -0.1
YBX3-215ENST00000544504 PKD2Q13563 968 aa14.44□□□□□ -0.1
YBX3-215ENST00000544504 GPATCH8Q9UKJ3 1502 aaKnown RBP14.42□□□□□ -0.1
YBX3-215ENST00000544504 PLA2R1Q13018 1463 aa14.42□□□□□ -0.1
YBX3-215ENST00000544504 CFDP1Q9UEE9 299 aaPredicted RBP14.41□□□□□ -0.1
YBX3-215ENST00000544504 MED1Q15648 1581 aaPredicted RBP14.41□□□□□ -0.1
YBX3-215ENST00000544504 ZMYM3Q14202 1370 aa14.4□□□□□ -0.1
YBX3-215ENST00000544504 HSPA1LP34931 641 aa14.4□□□□□ -0.1
YBX3-215ENST00000544504 PREX2Q70Z35 1606 aa14.4□□□□□ -0.1
YBX3-215ENST00000544504 TCOF1Q13428 1488 aaKnown RBP14.39□□□□□ -0.11
YBX3-215ENST00000544504 CDC42BPAQ5VT25 1732 aa14.39□□□□□ -0.11
YBX3-215ENST00000544504 PTPN23Q9H3S7 1636 aa14.38□□□□□ -0.11
YBX3-215ENST00000544504 MROH2AA6NES4 1674 aa14.38□□□□□ -0.11
YBX3-215ENST00000544504 SCAF1Q9H7N4 1312 aaKnown RBP14.38□□□□□ -0.11
YBX3-215ENST00000544504 ABCC1P33527 1531 aa14.37□□□□□ -0.11
YBX3-215ENST00000544504 TOM1O60784 492 aa14.37□□□□□ -0.11
YBX3-215ENST00000544504 FAM50AQ14320 339 aaKnown RBP14.37□□□□□ -0.11
YBX3-215ENST00000544504 PPP6R1Q9UPN7 881 aa14.37□□□□□ -0.11
YBX3-215ENST00000544504 PLEKHH2Q8IVE3 1493 aa14.37□□□□□ -0.11
YBX3-215ENST00000544504 PIP4K2BP78356 416 aa14.36□□□□□ -0.11
YBX3-215ENST00000544504 PHF23Q9BUL5 403 aaPredicted RBP14.35□□□□□ -0.11
YBX3-215ENST00000544504 PCGF6Q9BYE7 350 aa14.35□□□□□ -0.11
YBX3-215ENST00000544504 ZNF142P52746 1687 aaPredicted RBP14.34□□□□□ -0.11
YBX3-215ENST00000544504 KIDINS220Q9ULH0 1771 aa14.34□□□□□ -0.11
YBX3-215ENST00000544504 CEP170BQ9Y4F5 1589 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms