RNA–Protein interactions for RNA: ENST00000544454.5

LTBR-213, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5

Gene LTBR, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-213ENST00000544454 CCNB3Q8WWL7 1395 aa21.49■■□□□ 1.03
LTBR-213ENST00000544454 KANK4Q5T7N3 995 aaPredicted RBP21.49■■□□□ 1.03
LTBR-213ENST00000544454 ARHGAP5Q13017 1502 aa21.49■■□□□ 1.03
LTBR-213ENST00000544454 MYO5CQ9NQX4 1742 aa21.49■■□□□ 1.03
LTBR-213ENST00000544454 DENND4BO75064 1496 aaPredicted RBP21.48■■□□□ 1.03
LTBR-213ENST00000544454 CFDP1Q9UEE9 299 aaPredicted RBP21.47■■□□□ 1.03
LTBR-213ENST00000544454 SCAPERQ9BY12 1400 aa21.46■■□□□ 1.03
LTBR-213ENST00000544454 ADGRL1O94910 1474 aa21.46■■□□□ 1.03
LTBR-213ENST00000544454 NCOA2Q15596 1464 aa21.43■■□□□ 1.02
LTBR-213ENST00000544454 PREX2Q70Z35 1606 aa21.43■■□□□ 1.02
LTBR-213ENST00000544454 ZNF777Q9ULD5 760 aaPredicted RBP21.42■■□□□ 1.02
LTBR-213ENST00000544454 CDC42BPBQ9Y5S2 1711 aa21.41■■□□□ 1.02
LTBR-213ENST00000544454 CDC42BPAQ5VT25 1732 aa21.4■■□□□ 1.02
LTBR-213ENST00000544454 SUPT6HQ7KZ85 1726 aaKnown RBP21.39■■□□□ 1.01
LTBR-213ENST00000544454 POGZQ7Z3K3 1410 aa21.38■■□□□ 1.01
LTBR-213ENST00000544454 AFAP1Q8N556 730 aa21.37■■□□□ 1.01
LTBR-213ENST00000544454 FRMPD1Q5SYB0 1578 aa21.36■■□□□ 1.01
LTBR-213ENST00000544454 KIAA1107Q9UPP5 1409 aa21.36■■□□□ 1.01
LTBR-213ENST00000544454 PLEKHH2Q8IVE3 1493 aa21.35■■□□□ 1.01
LTBR-213ENST00000544454 ZNF518AQ6AHZ1 1483 aa21.34■■□□□ 1.01
LTBR-213ENST00000544454 MAGI2Q86UL8 1455 aa21.34■■□□□ 1.01
LTBR-213ENST00000544454 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
LTBR-213ENST00000544454 HNRNPMP52272 730 aaKnown RBP eCLIP21.33■■□□□ 1.01
LTBR-213ENST00000544454 ABCC1P33527 1531 aa21.33■■□□□ 1
LTBR-213ENST00000544454 ARHGEF12Q9NZN5 1544 aa21.33■■□□□ 1
LTBR-213ENST00000544454 ZNF644Q9H582 1327 aaPredicted RBP21.32■■□□□ 1
LTBR-213ENST00000544454 TRAPPC8Q9Y2L5 1435 aa21.31■■□□□ 1
LTBR-213ENST00000544454 ZMYM4Q5VZL5 1548 aa21.31■■□□□ 1
LTBR-213ENST00000544454 SAMD9LQ8IVG5 1584 aa21.31■■□□□ 1
LTBR-213ENST00000544454 ITSN2Q9NZM3 1697 aa21.3■■□□□ 1
LTBR-213ENST00000544454 RSPH4AQ5TD94 716 aa21.28■■□□□ 1
LTBR-213ENST00000544454 MYOM3Q5VTT5 1437 aa21.28■■□□□ 1
LTBR-213ENST00000544454 MIA2Q96PC5 1412 aa21.28■■□□□ 1
LTBR-213ENST00000544454 MYT1LQ9UL68 1186 aa21.26■□□□□ 0.99
LTBR-213ENST00000544454 KDM5CP41229 1560 aa21.26■□□□□ 0.99
LTBR-213ENST00000544454 MLH3Q9UHC1 1453 aa21.26■□□□□ 0.99
LTBR-213ENST00000544454 SYCP2Q9BX26 1530 aa21.25■□□□□ 0.99
LTBR-213ENST00000544454 YEATS2Q9ULM3 1422 aa21.25■□□□□ 0.99
LTBR-213ENST00000544454 MBD5Q9P267 1494 aa21.25■□□□□ 0.99
LTBR-213ENST00000544454 ZFYVE16Q7Z3T8 1539 aa21.24■□□□□ 0.99
LTBR-213ENST00000544454 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
LTBR-213ENST00000544454 CAMSAP2Q08AD1 1489 aa21.22■□□□□ 0.99
LTBR-213ENST00000544454 KDM4FA0A1W2PPD8 638 aa21.22■□□□□ 0.99
LTBR-213ENST00000544454 ARHGEF40Q8TER5 1519 aa21.22■□□□□ 0.99
LTBR-213ENST00000544454 ATP10AO60312 1499 aa21.21■□□□□ 0.99
LTBR-213ENST00000544454 ARID4BQ4LE39 1312 aaPredicted RBP21.2■□□□□ 0.98
LTBR-213ENST00000544454 HECW2Q9P2P5 1572 aa21.18■□□□□ 0.98
LTBR-213ENST00000544454 TSPY4P0CV99 314 aa21.17■□□□□ 0.98
LTBR-213ENST00000544454 TSPY10P0CW01 314 aa21.17■□□□□ 0.98
LTBR-213ENST00000544454 FGD6Q6ZV73 1430 aa21.17■□□□□ 0.98
LTBR-213ENST00000544454 C9orf84Q5VXU9 1444 aa21.16■□□□□ 0.98
LTBR-213ENST00000544454 CCDC141Q6ZP82 1450 aa21.15■□□□□ 0.98
LTBR-213ENST00000544454 PPARGC1BQ86YN6 1023 aaKnown RBP21.15■□□□□ 0.98
LTBR-213ENST00000544454 RTEL1-TNFRSF6BF6WH68 1400 aa21.14■□□□□ 0.98
LTBR-213ENST00000544454 ARHGEF5Q12774 1597 aa21.13■□□□□ 0.97
LTBR-213ENST00000544454 KIDINS220Q9ULH0 1771 aa21.11■□□□□ 0.97
LTBR-213ENST00000544454 TCOF1Q13428 1488 aaKnown RBP21.11■□□□□ 0.97
LTBR-213ENST00000544454 DIP2CQ9Y2E4 1556 aa21.1■□□□□ 0.97
LTBR-213ENST00000544454 ATP7AQ04656 1500 aa21.1■□□□□ 0.97
LTBR-213ENST00000544454 PTPN23Q9H3S7 1636 aa21.09■□□□□ 0.97
LTBR-213ENST00000544454 REREQ9P2R6 1566 aa21.09■□□□□ 0.97
LTBR-213ENST00000544454 INO80Q9ULG1 1556 aaPredicted RBP21.08■□□□□ 0.97
LTBR-213ENST00000544454 ABCA6Q8N139 1617 aa21.07■□□□□ 0.96
LTBR-213ENST00000544454 FAM50AQ14320 339 aaKnown RBP21.06■□□□□ 0.96
LTBR-213ENST00000544454 MLECQ14165 292 aa21.05■□□□□ 0.96
LTBR-213ENST00000544454 ABCC5O15440 1437 aa21.04■□□□□ 0.96
LTBR-213ENST00000544454 AGLP35573 1532 aa21.04■□□□□ 0.96
LTBR-213ENST00000544454 A2MP01023 1474 aa21.04■□□□□ 0.96
LTBR-213ENST00000544454 DHX29Q7Z478 1369 aaKnown RBP21.02■□□□□ 0.96
LTBR-213ENST00000544454 BCORL1Q5H9F3 1711 aa21.02■□□□□ 0.96
LTBR-213ENST00000544454 SIGLEC1Q9BZZ2 1709 aa21.02■□□□□ 0.96
LTBR-213ENST00000544454 DAPK1P53355 1430 aa21.01■□□□□ 0.95
LTBR-213ENST00000544454 ADAMTSL3P82987 1691 aa21■□□□□ 0.95
LTBR-213ENST00000544454 MAST1Q9Y2H9 1570 aa21■□□□□ 0.95
LTBR-213ENST00000544454 SHANK2Q9UPX8 1470 aa20.99■□□□□ 0.95
LTBR-213ENST00000544454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.98■□□□□ 0.95
LTBR-213ENST00000544454 PLXNC1O60486 1568 aa20.97■□□□□ 0.95
LTBR-213ENST00000544454 DNMT1P26358 1616 aaKnown RBP20.96■□□□□ 0.95
LTBR-213ENST00000544454 ADGBQ8N7X0 1667 aa20.96■□□□□ 0.95
LTBR-213ENST00000544454 PPP6R1Q9UPN7 881 aa20.95■□□□□ 0.94
LTBR-213ENST00000544454 ESF1Q9H501 851 aaKnown RBP20.94■□□□□ 0.94
LTBR-213ENST00000544454 RRP7BPQ9NSQ0 103 aa20.94■□□□□ 0.94
LTBR-213ENST00000544454 CHIC2Q9UKJ5 165 aa20.94■□□□□ 0.94
LTBR-213ENST00000544454 PTPRMP28827 1452 aa20.94■□□□□ 0.94
LTBR-213ENST00000544454 KIF3BO15066 747 aa20.93■□□□□ 0.94
LTBR-213ENST00000544454 GGT6Q6P531 493 aa20.93■□□□□ 0.94
LTBR-213ENST00000544454 ANKRD30AQ9BXX3 1397 aa20.93■□□□□ 0.94
LTBR-213ENST00000544454 KIF15Q9NS87 1388 aa20.92■□□□□ 0.94
LTBR-213ENST00000544454 RRBP1Q9P2E9 1410 aaKnown RBP20.92■□□□□ 0.94
LTBR-213ENST00000544454 MADDQ8WXG6 1647 aa20.92■□□□□ 0.94
LTBR-213ENST00000544454 NCOA1Q15788 1441 aa20.9■□□□□ 0.94
LTBR-213ENST00000544454 DUOX2Q9NRD8 1548 aa20.88■□□□□ 0.93
LTBR-213ENST00000544454 CROCC2H7BZ55 1655 aa20.88■□□□□ 0.93
LTBR-213ENST00000544454 PTPRKQ15262 1439 aa20.87■□□□□ 0.93
LTBR-213ENST00000544454 CNTLNQ9NXG0 1405 aa20.87■□□□□ 0.93
LTBR-213ENST00000544454 ADGRL2O95490 1459 aa20.87■□□□□ 0.93
LTBR-213ENST00000544454 ITGAEP38570 1179 aa20.85■□□□□ 0.93
LTBR-213ENST00000544454 RIMS1Q86UR5 1692 aaKnown RBP20.84■□□□□ 0.93
LTBR-213ENST00000544454 ERBINQ96RT1 1412 aa20.84■□□□□ 0.93
LTBR-213ENST00000544454 ROCK1Q13464 1354 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms