RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 FRMPD1Q5SYB0 1578 aa30.24■■■□□ 2.43
DDX55-211ENST00000544429 ARHGAP5Q13017 1502 aa30.22■■■□□ 2.43
DDX55-211ENST00000544429 RICTORQ6R327 1708 aa30.22■■■□□ 2.43
DDX55-211ENST00000544429 EFCAB2Q5VUJ9 269 aa30.21■■■□□ 2.43
DDX55-211ENST00000544429 SUPT6HQ7KZ85 1726 aaKnown RBP30.21■■■□□ 2.43
DDX55-211ENST00000544429 ADGRL1O94910 1474 aa30.18■■■□□ 2.42
DDX55-211ENST00000544429 KANK4Q5T7N3 995 aaPredicted RBP30.17■■■□□ 2.42
DDX55-211ENST00000544429 NCOA2Q15596 1464 aa30.17■■■□□ 2.42
DDX55-211ENST00000544429 DENND4BO75064 1496 aaPredicted RBP30.16■■■□□ 2.42
DDX55-211ENST00000544429 CCNB3Q8WWL7 1395 aa30.14■■■□□ 2.41
DDX55-211ENST00000544429 ITSN2Q9NZM3 1697 aa30.14■■■□□ 2.41
DDX55-211ENST00000544429 RAPGEF3O95398 923 aa30.13■■■□□ 2.41
DDX55-211ENST00000544429 SCAPERQ9BY12 1400 aa30.13■■■□□ 2.41
DDX55-211ENST00000544429 ABCC1P33527 1531 aa30.12■■■□□ 2.41
DDX55-211ENST00000544429 POGZQ7Z3K3 1410 aa30.11■■■□□ 2.41
DDX55-211ENST00000544429 ZMYM4Q5VZL5 1548 aa30.11■■■□□ 2.41
DDX55-211ENST00000544429 SAMD9LQ8IVG5 1584 aa30.11■■■□□ 2.41
DDX55-211ENST00000544429 ARHGEF12Q9NZN5 1544 aa30.06■■■□□ 2.4
DDX55-211ENST00000544429 KDM5CP41229 1560 aa30.04■■■□□ 2.4
DDX55-211ENST00000544429 APLP2Q06481 763 aa30.04■■■□□ 2.4
DDX55-211ENST00000544429 CFDP1Q9UEE9 299 aaPredicted RBP30.03■■■□□ 2.4
DDX55-211ENST00000544429 ZNF518AQ6AHZ1 1483 aa30.02■■■□□ 2.4
DDX55-211ENST00000544429 KIAA1107Q9UPP5 1409 aa30.01■■■□□ 2.39
DDX55-211ENST00000544429 MAGI2Q86UL8 1455 aa29.99■■■□□ 2.39
DDX55-211ENST00000544429 PLEKHH2Q8IVE3 1493 aa29.99■■■□□ 2.39
DDX55-211ENST00000544429 ARHGEF40Q8TER5 1519 aa29.98■■■□□ 2.39
DDX55-211ENST00000544429 TRAPPC8Q9Y2L5 1435 aa29.97■■■□□ 2.39
DDX55-211ENST00000544429 SYCP2Q9BX26 1530 aa29.97■■■□□ 2.39
DDX55-211ENST00000544429 MYOM3Q5VTT5 1437 aa29.94■■■□□ 2.38
DDX55-211ENST00000544429 AFAP1Q8N556 730 aa29.93■■■□□ 2.38
DDX55-211ENST00000544429 ZNF777Q9ULD5 760 aaPredicted RBP29.93■■■□□ 2.38
DDX55-211ENST00000544429 ZFYVE16Q7Z3T8 1539 aa29.92■■■□□ 2.38
DDX55-211ENST00000544429 MBD5Q9P267 1494 aa29.92■■■□□ 2.38
DDX55-211ENST00000544429 ZNF644Q9H582 1327 aaPredicted RBP29.92■■■□□ 2.38
DDX55-211ENST00000544429 HECW2Q9P2P5 1572 aa29.91■■■□□ 2.38
DDX55-211ENST00000544429 MIA2Q96PC5 1412 aa29.91■■■□□ 2.38
DDX55-211ENST00000544429 YEATS2Q9ULM3 1422 aa29.91■■■□□ 2.38
DDX55-211ENST00000544429 MLH3Q9UHC1 1453 aa29.91■■■□□ 2.38
DDX55-211ENST00000544429 CAMSAP2Q08AD1 1489 aa29.89■■■□□ 2.38
DDX55-211ENST00000544429 KIDINS220Q9ULH0 1771 aa29.86■■■□□ 2.37
DDX55-211ENST00000544429 HNRNPMP52272 730 aaKnown RBP eCLIP29.86■■■□□ 2.37
DDX55-211ENST00000544429 SIGLEC1Q9BZZ2 1709 aa29.82■■■□□ 2.36
DDX55-211ENST00000544429 ARHGEF5Q12774 1597 aa29.82■■■□□ 2.36
DDX55-211ENST00000544429 ABCA6Q8N139 1617 aa29.82■■■□□ 2.36
DDX55-211ENST00000544429 INO80Q9ULG1 1556 aaPredicted RBP29.81■■■□□ 2.36
DDX55-211ENST00000544429 DIP2CQ9Y2E4 1556 aa29.81■■■□□ 2.36
DDX55-211ENST00000544429 ATP10AO60312 1499 aa29.8■■■□□ 2.36
DDX55-211ENST00000544429 REREQ9P2R6 1566 aa29.79■■■□□ 2.36
DDX55-211ENST00000544429 FGD6Q6ZV73 1430 aa29.78■■■□□ 2.36
DDX55-211ENST00000544429 CCDC141Q6ZP82 1450 aa29.77■■■□□ 2.36
DDX55-211ENST00000544429 PTPN23Q9H3S7 1636 aa29.77■■■□□ 2.36
DDX55-211ENST00000544429 TCOF1Q13428 1488 aaKnown RBP29.76■■■□□ 2.35
DDX55-211ENST00000544429 KDM4FA0A1W2PPD8 638 aa29.76■■■□□ 2.35
DDX55-211ENST00000544429 ATP7AQ04656 1500 aa29.76■■■□□ 2.35
DDX55-211ENST00000544429 C9orf84Q5VXU9 1444 aa29.75■■■□□ 2.35
DDX55-211ENST00000544429 RSPH4AQ5TD94 716 aa29.74■■■□□ 2.35
DDX55-211ENST00000544429 SPAG9O60271 1321 aaKnown RBP29.73■■■□□ 2.35
DDX55-211ENST00000544429 RTEL1-TNFRSF6BF6WH68 1400 aa29.72■■■□□ 2.35
DDX55-211ENST00000544429 BCORL1Q5H9F3 1711 aa29.71■■■□□ 2.35
DDX55-211ENST00000544429 ADAMTSL3P82987 1691 aa29.69■■■□□ 2.34
DDX55-211ENST00000544429 MAST1Q9Y2H9 1570 aa29.68■■■□□ 2.34
DDX55-211ENST00000544429 AGLP35573 1532 aa29.66■■■□□ 2.34
DDX55-211ENST00000544429 PLXNC1O60486 1568 aa29.64■■■□□ 2.34
DDX55-211ENST00000544429 CROCC2H7BZ55 1655 aa29.63■■■□□ 2.33
DDX55-211ENST00000544429 ADGBQ8N7X0 1667 aa29.63■■■□□ 2.33
DDX55-211ENST00000544429 DNMT1P26358 1616 aaKnown RBP29.63■■■□□ 2.33
DDX55-211ENST00000544429 MYT1LQ9UL68 1186 aa29.61■■■□□ 2.33
DDX55-211ENST00000544429 ABCC5O15440 1437 aa29.6■■■□□ 2.33
DDX55-211ENST00000544429 PPARGC1BQ86YN6 1023 aaKnown RBP29.59■■■□□ 2.33
DDX55-211ENST00000544429 SHANK2Q9UPX8 1470 aa29.59■■■□□ 2.33
DDX55-211ENST00000544429 A2MP01023 1474 aa29.57■■■□□ 2.32
DDX55-211ENST00000544429 ARID4BQ4LE39 1312 aaPredicted RBP29.57■■■□□ 2.32
DDX55-211ENST00000544429 DAPK1P53355 1430 aa29.56■■■□□ 2.32
DDX55-211ENST00000544429 TSPY4P0CV99 314 aa29.55■■■□□ 2.32
DDX55-211ENST00000544429 TSPY10P0CW01 314 aa29.55■■■□□ 2.32
DDX55-211ENST00000544429 MADDQ8WXG6 1647 aa29.55■■■□□ 2.32
DDX55-211ENST00000544429 DHX29Q7Z478 1369 aaKnown RBP29.51■■■□□ 2.31
DDX55-211ENST00000544429 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.51■■■□□ 2.31
DDX55-211ENST00000544429 FER1L4A9Z1Z3 1794 aa29.48■■■□□ 2.31
DDX55-211ENST00000544429 RRBP1Q9P2E9 1410 aaKnown RBP29.47■■■□□ 2.31
DDX55-211ENST00000544429 RIMS1Q86UR5 1692 aaKnown RBP29.44■■■□□ 2.3
DDX55-211ENST00000544429 PTPRMP28827 1452 aa29.44■■■□□ 2.3
DDX55-211ENST00000544429 FAM50AQ14320 339 aaKnown RBP29.44■■■□□ 2.3
DDX55-211ENST00000544429 ADGRL2O95490 1459 aa29.42■■■□□ 2.3
DDX55-211ENST00000544429 MLECQ14165 292 aa29.41■■■□□ 2.3
DDX55-211ENST00000544429 AEBP2Q6ZN18 517 aaPredicted RBP29.41■■■□□ 2.3
DDX55-211ENST00000544429 DUOX2Q9NRD8 1548 aa29.4■■■□□ 2.3
DDX55-211ENST00000544429 PTPRKQ15262 1439 aa29.39■■■□□ 2.3
DDX55-211ENST00000544429 EIF2AK4Q9P2K8 1649 aaKnown RBP29.38■■■□□ 2.29
DDX55-211ENST00000544429 NCOA1Q15788 1441 aa29.38■■■□□ 2.29
DDX55-211ENST00000544429 KIF15Q9NS87 1388 aa29.36■■■□□ 2.29
DDX55-211ENST00000544429 RNF17Q9BXT8 1623 aaKnown RBP29.34■■■□□ 2.29
DDX55-211ENST00000544429 ANKRD30AQ9BXX3 1397 aa29.34■■■□□ 2.29
DDX55-211ENST00000544429 MROH2AA6NES4 1674 aa29.31■■■□□ 2.28
DDX55-211ENST00000544429 ERBINQ96RT1 1412 aa29.31■■■□□ 2.28
DDX55-211ENST00000544429 CNTLNQ9NXG0 1405 aa29.3■■■□□ 2.28
DDX55-211ENST00000544429 CHIC2Q9UKJ5 165 aa29.3■■■□□ 2.28
DDX55-211ENST00000544429 PPP6R1Q9UPN7 881 aa29.3■■■□□ 2.28
DDX55-211ENST00000544429 FAM135AQ9P2D6 1515 aa29.3■■■□□ 2.28
DDX55-211ENST00000544429 KIF3BO15066 747 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms