RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 CDC42BPBQ9Y5S2 1711 aa21.19■□□□□ 0.98
TNFRSF1A-215ENST00000543359 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
TNFRSF1A-215ENST00000543359 ADAMTSL3P82987 1691 aa21.18■□□□□ 0.98
TNFRSF1A-215ENST00000543359 YEATS2Q9ULM3 1422 aa21.17■□□□□ 0.98
TNFRSF1A-215ENST00000543359 MAGI2Q86UL8 1455 aa21.17■□□□□ 0.98
TNFRSF1A-215ENST00000543359 LOC105371045A0A1W2PR82 267 aa21.16■□□□□ 0.98
TNFRSF1A-215ENST00000543359 ARHGAP5Q13017 1502 aa21.15■□□□□ 0.98
TNFRSF1A-215ENST00000543359 PREX2Q70Z35 1606 aa21.14■□□□□ 0.97
TNFRSF1A-215ENST00000543359 ZFYVE16Q7Z3T8 1539 aa21.14■□□□□ 0.97
TNFRSF1A-215ENST00000543359 BCORL1Q5H9F3 1711 aa21.13■□□□□ 0.97
TNFRSF1A-215ENST00000543359 SIGLEC1Q9BZZ2 1709 aa21.13■□□□□ 0.97
TNFRSF1A-215ENST00000543359 CDC42BPAQ5VT25 1732 aa21.12■□□□□ 0.97
TNFRSF1A-215ENST00000543359 AFAP1Q8N556 730 aa21.11■□□□□ 0.97
TNFRSF1A-215ENST00000543359 ARHGEF12Q9NZN5 1544 aa21.1■□□□□ 0.97
TNFRSF1A-215ENST00000543359 KDM5CP41229 1560 aa21.09■□□□□ 0.97
TNFRSF1A-215ENST00000543359 GPATCH8Q9UKJ3 1502 aaKnown RBP21.09■□□□□ 0.97
TNFRSF1A-215ENST00000543359 ARID4BQ4LE39 1312 aaPredicted RBP21.08■□□□□ 0.97
TNFRSF1A-215ENST00000543359 ZNF518AQ6AHZ1 1483 aa21.08■□□□□ 0.97
TNFRSF1A-215ENST00000543359 PTPRMP28827 1452 aa21.07■□□□□ 0.96
TNFRSF1A-215ENST00000543359 ABCC1P33527 1531 aa21.07■□□□□ 0.96
TNFRSF1A-215ENST00000543359 MADDQ8WXG6 1647 aa21.06■□□□□ 0.96
TNFRSF1A-215ENST00000543359 ATP10AO60312 1499 aa21.06■□□□□ 0.96
TNFRSF1A-215ENST00000543359 TRAPPC8Q9Y2L5 1435 aa21.05■□□□□ 0.96
TNFRSF1A-215ENST00000543359 ITSN2Q9NZM3 1697 aa21.02■□□□□ 0.96
TNFRSF1A-215ENST00000543359 HECW2Q9P2P5 1572 aa21.02■□□□□ 0.96
TNFRSF1A-215ENST00000543359 MLH3Q9UHC1 1453 aa21.02■□□□□ 0.96
TNFRSF1A-215ENST00000543359 MTUS2Q5JR59 1369 aa21.01■□□□□ 0.95
TNFRSF1A-215ENST00000543359 C9orf84Q5VXU9 1444 aa21.01■□□□□ 0.95
TNFRSF1A-215ENST00000543359 SAMD9LQ8IVG5 1584 aa21.01■□□□□ 0.95
TNFRSF1A-215ENST00000543359 DIP2CQ9Y2E4 1556 aa20.98■□□□□ 0.95
TNFRSF1A-215ENST00000543359 EHBP1L1Q8N3D4 1523 aa20.98■□□□□ 0.95
TNFRSF1A-215ENST00000543359 CCNB3Q8WWL7 1395 aa20.97■□□□□ 0.95
TNFRSF1A-215ENST00000543359 VPS8Q8N3P4 1428 aa20.96■□□□□ 0.95
TNFRSF1A-215ENST00000543359 RIMS1Q86UR5 1692 aaKnown RBP20.96■□□□□ 0.95
TNFRSF1A-215ENST00000543359 CFDP1Q9UEE9 299 aaPredicted RBP20.96■□□□□ 0.95
TNFRSF1A-215ENST00000543359 ZNF777Q9ULD5 760 aaPredicted RBP20.96■□□□□ 0.95
TNFRSF1A-215ENST00000543359 ABCA6Q8N139 1617 aa20.96■□□□□ 0.95
TNFRSF1A-215ENST00000543359 KIAA1107Q9UPP5 1409 aa20.95■□□□□ 0.95
TNFRSF1A-215ENST00000543359 TIAM1Q13009 1591 aa20.95■□□□□ 0.94
TNFRSF1A-215ENST00000543359 REREQ9P2R6 1566 aa20.95■□□□□ 0.94
TNFRSF1A-215ENST00000543359 KIDINS220Q9ULH0 1771 aa20.95■□□□□ 0.94
TNFRSF1A-215ENST00000543359 SYCP2Q9BX26 1530 aa20.94■□□□□ 0.94
TNFRSF1A-215ENST00000543359 HNRNPMP52272 730 aaKnown RBP eCLIP20.94■□□□□ 0.94
TNFRSF1A-215ENST00000543359 MLECQ14165 292 aa20.94■□□□□ 0.94
TNFRSF1A-215ENST00000543359 PLEKHH2Q8IVE3 1493 aa20.9■□□□□ 0.94
TNFRSF1A-215ENST00000543359 ZNF644Q9H582 1327 aaPredicted RBP20.9■□□□□ 0.94
TNFRSF1A-215ENST00000543359 FER1L4A9Z1Z3 1794 aa20.9■□□□□ 0.94
TNFRSF1A-215ENST00000543359 MYT1LQ9UL68 1186 aa20.89■□□□□ 0.93
TNFRSF1A-215ENST00000543359 AGLP35573 1532 aa20.88■□□□□ 0.93
TNFRSF1A-215ENST00000543359 NCOA2Q15596 1464 aa20.88■□□□□ 0.93
TNFRSF1A-215ENST00000543359 MBD5Q9P267 1494 aa20.88■□□□□ 0.93
TNFRSF1A-215ENST00000543359 SPAG9O60271 1321 aaKnown RBP20.86■□□□□ 0.93
TNFRSF1A-215ENST00000543359 LRRC9Q6ZRR7 1453 aa20.86■□□□□ 0.93
TNFRSF1A-215ENST00000543359 MAP3K1Q13233 1512 aa20.85■□□□□ 0.93
TNFRSF1A-215ENST00000543359 SUPT6HQ7KZ85 1726 aaKnown RBP20.85■□□□□ 0.93
TNFRSF1A-215ENST00000543359 LMTK3Q96Q04 1460 aa20.85■□□□□ 0.93
TNFRSF1A-215ENST00000543359 INO80Q9ULG1 1556 aaPredicted RBP20.84■□□□□ 0.93
TNFRSF1A-215ENST00000543359 KANK4Q5T7N3 995 aaPredicted RBP20.83■□□□□ 0.93
TNFRSF1A-215ENST00000543359 ATP7AQ04656 1500 aa20.82■□□□□ 0.92
TNFRSF1A-215ENST00000543359 PLPPR3Q6T4P5 718 aa20.8■□□□□ 0.92
TNFRSF1A-215ENST00000543359 CEBPAP49715 358 aaPredicted RBP20.79■□□□□ 0.92
TNFRSF1A-215ENST00000543359 PLXNC1O60486 1568 aa20.78■□□□□ 0.92
TNFRSF1A-215ENST00000543359 CAMSAP2Q08AD1 1489 aa20.76■□□□□ 0.91
TNFRSF1A-215ENST00000543359 RTEL1-TNFRSF6BF6WH68 1400 aa20.76■□□□□ 0.91
TNFRSF1A-215ENST00000543359 A2MP01023 1474 aa20.75■□□□□ 0.91
TNFRSF1A-215ENST00000543359 HSPA2P54652 639 aa20.72■□□□□ 0.91
TNFRSF1A-215ENST00000543359 CCDC141Q6ZP82 1450 aa20.72■□□□□ 0.91
TNFRSF1A-215ENST00000543359 C3P01024 1663 aa20.72■□□□□ 0.91
TNFRSF1A-215ENST00000543359 RSPH4AQ5TD94 716 aa20.71■□□□□ 0.91
TNFRSF1A-215ENST00000543359 SETD1BQ9UPS6 1966 aaKnown RBP20.71■□□□□ 0.91
TNFRSF1A-215ENST00000543359 ADGBQ8N7X0 1667 aa20.7■□□□□ 0.91
TNFRSF1A-215ENST00000543359 ARHGEF5Q12774 1597 aa20.7■□□□□ 0.9
TNFRSF1A-215ENST00000543359 CNTLNQ9NXG0 1405 aa20.69■□□□□ 0.9
TNFRSF1A-215ENST00000543359 PREX1Q8TCU6 1659 aa20.68■□□□□ 0.9
TNFRSF1A-215ENST00000543359 DHX29Q7Z478 1369 aaKnown RBP20.68■□□□□ 0.9
TNFRSF1A-215ENST00000543359 MYOM3Q5VTT5 1437 aa20.68■□□□□ 0.9
TNFRSF1A-215ENST00000543359 MIA2Q96PC5 1412 aa20.66■□□□□ 0.9
TNFRSF1A-215ENST00000543359 ESF1Q9H501 851 aaKnown RBP20.65■□□□□ 0.9
TNFRSF1A-215ENST00000543359 MROH2AA6NES4 1674 aa20.64■□□□□ 0.9
TNFRSF1A-215ENST00000543359 ZMYM3Q14202 1370 aa20.64■□□□□ 0.89
TNFRSF1A-215ENST00000543359 GGT6Q6P531 493 aa20.62■□□□□ 0.89
TNFRSF1A-215ENST00000543359 PPP6R1Q9UPN7 881 aa20.62■□□□□ 0.89
TNFRSF1A-215ENST00000543359 CLTCQ00610 1675 aaKnown RBP20.61■□□□□ 0.89
TNFRSF1A-215ENST00000543359 TSPY4P0CV99 314 aa20.6■□□□□ 0.89
TNFRSF1A-215ENST00000543359 TSPY10P0CW01 314 aa20.6■□□□□ 0.89
TNFRSF1A-215ENST00000543359 APLP2Q06481 763 aa20.6■□□□□ 0.89
TNFRSF1A-215ENST00000543359 UHRF1BP1Q6BDS2 1440 aa20.6■□□□□ 0.89
TNFRSF1A-215ENST00000543359 MAST1Q9Y2H9 1570 aa20.59■□□□□ 0.89
TNFRSF1A-215ENST00000543359 ILDR1Q86SU0 546 aaPredicted RBP20.59■□□□□ 0.89
TNFRSF1A-215ENST00000543359 NPATQ14207 1427 aa20.59■□□□□ 0.89
TNFRSF1A-215ENST00000543359 PTPRKQ15262 1439 aa20.56■□□□□ 0.88
TNFRSF1A-215ENST00000543359 KIF3BO15066 747 aa20.56■□□□□ 0.88
TNFRSF1A-215ENST00000543359 STRCQ7RTU9 1775 aa20.56■□□□□ 0.88
TNFRSF1A-215ENST00000543359 PTPN23Q9H3S7 1636 aa20.53■□□□□ 0.88
TNFRSF1A-215ENST00000543359 ABCC5O15440 1437 aa20.53■□□□□ 0.88
TNFRSF1A-215ENST00000543359 FGD6Q6ZV73 1430 aa20.53■□□□□ 0.88
TNFRSF1A-215ENST00000543359 TCOF1Q13428 1488 aaKnown RBP20.52■□□□□ 0.88
TNFRSF1A-215ENST00000543359 FAM135AQ9P2D6 1515 aa20.49■□□□□ 0.87
TNFRSF1A-215ENST00000543359 RNF17Q9BXT8 1623 aaKnown RBP20.48■□□□□ 0.87
TNFRSF1A-215ENST00000543359 SHANK2Q9UPX8 1470 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms