RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 NISCHQ9Y2I1 1504 aa32.56■■■□□ 2.8
TNFRSF1A-215ENST00000543359 CCDC180Q9P1Z9 1646 aa29.05■■■□□ 2.24
TNFRSF1A-215ENST00000543359 ABCC9O60706 1549 aa28.74■■■□□ 2.19
TNFRSF1A-215ENST00000543359 RB1CC1Q8TDY2 1594 aa27.48■■□□□ 1.99
TNFRSF1A-215ENST00000543359 NACADO15069 1562 aa27.39■■□□□ 1.98
TNFRSF1A-215ENST00000543359 DCAF8L2P0C7V8 631 aa27.26■■□□□ 1.95
TNFRSF1A-215ENST00000543359 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
TNFRSF1A-215ENST00000543359 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
TNFRSF1A-215ENST00000543359 DCAF1Q9Y4B6 1507 aa26.93■■□□□ 1.9
TNFRSF1A-215ENST00000543359 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
TNFRSF1A-215ENST00000543359 PABPN1Q86U42 306 aaKnown RBP eCLIP26.83■■□□□ 1.89
TNFRSF1A-215ENST00000543359 DNAJC5BQ9UF47 199 aa26.79■■□□□ 1.88
TNFRSF1A-215ENST00000543359 BICRAQ9NZM4 1560 aa26.75■■□□□ 1.87
TNFRSF1A-215ENST00000543359 SCRIBQ14160 1630 aa26.47■■□□□ 1.83
TNFRSF1A-215ENST00000543359 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
TNFRSF1A-215ENST00000543359 EIF4G1Q04637 1599 aaKnown RBP26.02■■□□□ 1.76
TNFRSF1A-215ENST00000543359 CC2D2AQ9P2K1 1620 aa25.99■■□□□ 1.75
TNFRSF1A-215ENST00000543359 CECR2Q9BXF3 1484 aa25.86■■□□□ 1.73
TNFRSF1A-215ENST00000543359 NCAPD3P42695 1498 aa25.33■■□□□ 1.65
TNFRSF1A-215ENST00000543359 SMARCA4P51532 1647 aa25.31■■□□□ 1.64
TNFRSF1A-215ENST00000543359 ATAD2BQ9ULI0 1458 aa25.28■■□□□ 1.64
TNFRSF1A-215ENST00000543359 BAZ1AQ9NRL2 1556 aaPredicted RBP25.21■■□□□ 1.63
TNFRSF1A-215ENST00000543359 SMARCA2P51531 1590 aa25.18■■□□□ 1.62
TNFRSF1A-215ENST00000543359 HMGXB3Q12766 1538 aa25.13■■□□□ 1.61
TNFRSF1A-215ENST00000543359 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
TNFRSF1A-215ENST00000543359 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
TNFRSF1A-215ENST00000543359 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
TNFRSF1A-215ENST00000543359 NESP48681 1621 aa24.81■■□□□ 1.56
TNFRSF1A-215ENST00000543359 WIZO95785 1651 aa24.79■■□□□ 1.56
TNFRSF1A-215ENST00000543359 ERCC6Q03468 1493 aa24.73■■□□□ 1.55
TNFRSF1A-215ENST00000543359 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
TNFRSF1A-215ENST00000543359 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
TNFRSF1A-215ENST00000543359 CUX2O14529 1486 aa24.63■■□□□ 1.53
TNFRSF1A-215ENST00000543359 CADPSQ9ULU8 1353 aa24.55■■□□□ 1.52
TNFRSF1A-215ENST00000543359 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
TNFRSF1A-215ENST00000543359 TOP2AP11388 1531 aaKnown RBP24.49■■□□□ 1.51
TNFRSF1A-215ENST00000543359 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
TNFRSF1A-215ENST00000543359 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
TNFRSF1A-215ENST00000543359 CFTRP13569 1480 aa24.35■■□□□ 1.49
TNFRSF1A-215ENST00000543359 DNAJC5Q9H3Z4 198 aa24.32■■□□□ 1.48
TNFRSF1A-215ENST00000543359 MRC2Q9UBG0 1479 aa24.26■■□□□ 1.47
TNFRSF1A-215ENST00000543359 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
TNFRSF1A-215ENST00000543359 FANCD2Q9BXW9 1451 aa24.24■■□□□ 1.47
TNFRSF1A-215ENST00000543359 WDR62O43379 1518 aa24.22■■□□□ 1.47
TNFRSF1A-215ENST00000543359 CEP164Q9UPV0 1460 aa24.21■■□□□ 1.47
TNFRSF1A-215ENST00000543359 PRDM2Q13029 1718 aa24.07■■□□□ 1.44
TNFRSF1A-215ENST00000543359 URB2Q14146 1524 aaKnown RBP24.06■■□□□ 1.44
TNFRSF1A-215ENST00000543359 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
TNFRSF1A-215ENST00000543359 ABCC8Q09428 1581 aa23.78■■□□□ 1.4
TNFRSF1A-215ENST00000543359 SUPT5HO00267 1087 aaKnown RBP23.77■■□□□ 1.4
TNFRSF1A-215ENST00000543359 DNMBPQ6XZF7 1577 aa23.76■■□□□ 1.39
TNFRSF1A-215ENST00000543359 IFT140Q96RY7 1462 aa23.75■■□□□ 1.39
TNFRSF1A-215ENST00000543359 ZNF608Q9ULD9 1512 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1A-215ENST00000543359 TARBP1Q13395 1621 aaKnown RBP23.62■■□□□ 1.37
TNFRSF1A-215ENST00000543359 POLA1P09884 1462 aaPredicted RBP23.62■■□□□ 1.37
TNFRSF1A-215ENST00000543359 OSCARQ8IYS5 282 aa23.57■■□□□ 1.36
TNFRSF1A-215ENST00000543359 CUX1P39880 1505 aa23.56■■□□□ 1.36
TNFRSF1A-215ENST00000543359 EIF4G3O43432 1585 aaKnown RBP23.55■■□□□ 1.36
TNFRSF1A-215ENST00000543359 AQRO60306 1485 aaKnown RBP eCLIP23.53■■□□□ 1.363e-6■■■■□ 24.7
TNFRSF1A-215ENST00000543359 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
TNFRSF1A-215ENST00000543359 SOGA1O94964 1423 aa23.5■■□□□ 1.35
TNFRSF1A-215ENST00000543359 FGD5Q6ZNL6 1462 aa23.5■■□□□ 1.35
TNFRSF1A-215ENST00000543359 TDRD9Q8NDG6 1382 aaKnown RBP23.42■■□□□ 1.34
TNFRSF1A-215ENST00000543359 WDR97A6NE52 1622 aa23.36■■□□□ 1.33
TNFRSF1A-215ENST00000543359 CHD1O14646 1710 aa23.31■■□□□ 1.32
TNFRSF1A-215ENST00000543359 TRIM41Q8WV44 630 aa23.29■■□□□ 1.32
TNFRSF1A-215ENST00000543359 ABCA10Q8WWZ4 1543 aa23.27■■□□□ 1.32
TNFRSF1A-215ENST00000543359 SNAPC4Q5SXM2 1469 aa23.26■■□□□ 1.31
TNFRSF1A-215ENST00000543359 GRIN2BQ13224 1484 aa23.25■■□□□ 1.31
TNFRSF1A-215ENST00000543359 TOP2BQ02880 1626 aa23.25■■□□□ 1.31
TNFRSF1A-215ENST00000543359 BIVM-ERCC5R4GMW8 1640 aa23.25■■□□□ 1.31
TNFRSF1A-215ENST00000543359 WRNQ14191 1432 aaPredicted RBP eCLIP23.25■■□□□ 1.31
TNFRSF1A-215ENST00000543359 SYNJ1O43426 1573 aa23.24■■□□□ 1.31
TNFRSF1A-215ENST00000543359 FBLN2P98095 1184 aa23.23■■□□□ 1.31
TNFRSF1A-215ENST00000543359 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
TNFRSF1A-215ENST00000543359 RIMBP3CA6NJZ7 1639 aa23.22■■□□□ 1.31
TNFRSF1A-215ENST00000543359 RIMBP3BA6NNM3 1639 aa23.22■■□□□ 1.31
TNFRSF1A-215ENST00000543359 RIMBP3Q9UFD9 1639 aa23.22■■□□□ 1.31
TNFRSF1A-215ENST00000543359 MAGI1Q96QZ7 1491 aaPredicted RBP23.22■■□□□ 1.31
TNFRSF1A-215ENST00000543359 ABCA5Q8WWZ7 1642 aa23.2■■□□□ 1.3
TNFRSF1A-215ENST00000543359 ARHGEF11O15085 1522 aa23.19■■□□□ 1.3
TNFRSF1A-215ENST00000543359 PBRM1Q86U86 1689 aa23.16■■□□□ 1.3
TNFRSF1A-215ENST00000543359 SYNJ2O15056 1496 aa23.14■■□□□ 1.29
TNFRSF1A-215ENST00000543359 CHMP7Q8WUX9 453 aaPredicted RBP23.14■■□□□ 1.29
TNFRSF1A-215ENST00000543359 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
TNFRSF1A-215ENST00000543359 ARAP1Q96P48 1450 aa23■■□□□ 1.27
TNFRSF1A-215ENST00000543359 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
TNFRSF1A-215ENST00000543359 ADAMTS12P58397 1594 aa22.98■■□□□ 1.27
TNFRSF1A-215ENST00000543359 ERICH3Q5RHP9 1530 aa22.97■■□□□ 1.27
TNFRSF1A-215ENST00000543359 GRIN2AQ12879 1464 aa22.96■■□□□ 1.27
TNFRSF1A-215ENST00000543359 FHAD1B1AJZ9 1412 aa22.94■■□□□ 1.26
TNFRSF1A-215ENST00000543359 NUP160Q12769 1436 aa22.91■■□□□ 1.26
TNFRSF1A-215ENST00000543359 CEP170Q5SW79 1584 aa22.87■■□□□ 1.25
TNFRSF1A-215ENST00000543359 IGF1RP08069 1367 aa22.8■■□□□ 1.24
TNFRSF1A-215ENST00000543359 ERCC6L2Q5T890 1561 aa22.78■■□□□ 1.24
TNFRSF1A-215ENST00000543359 KIF27Q86VH2 1401 aa22.78■■□□□ 1.24
TNFRSF1A-215ENST00000543359 SHROOM2Q13796 1616 aa22.76■■□□□ 1.23
TNFRSF1A-215ENST00000543359 CUL7Q14999 1698 aa22.66■■□□□ 1.22
TNFRSF1A-215ENST00000543359 JPH4Q96JJ6 628 aa22.66■■□□□ 1.22
TNFRSF1A-215ENST00000543359 RUSC2Q8N2Y8 1516 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms