RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 IGF1RP08069 1367 aa5.98□□□□□ -1.45
CHD4-209ENST00000542717 PPP6R1Q9UPN7 881 aa5.98□□□□□ -1.45
CHD4-209ENST00000542717 EFCAB5A4FU69 1503 aa5.98□□□□□ -1.45
CHD4-209ENST00000542717 CAMSAP1Q5T5Y3 1602 aa5.97□□□□□ -1.45
CHD4-209ENST00000542717 ARHGEF12Q9NZN5 1544 aa5.97□□□□□ -1.45
CHD4-209ENST00000542717 PTPRKQ15262 1439 aa5.97□□□□□ -1.45
CHD4-209ENST00000542717 CARMIL1Q5VZK9 1371 aa5.96□□□□□ -1.45
CHD4-209ENST00000542717 PKD2Q13563 968 aa5.96□□□□□ -1.46
CHD4-209ENST00000542717 MYT1LQ9UL68 1186 aa5.96□□□□□ -1.46
CHD4-209ENST00000542717 TRAPPC8Q9Y2L5 1435 aa5.96□□□□□ -1.46
CHD4-209ENST00000542717 SIGLEC1Q9BZZ2 1709 aa5.96□□□□□ -1.46
CHD4-209ENST00000542717 ABCA9Q8IUA7 1624 aa5.96□□□□□ -1.46
CHD4-209ENST00000542717 FHOD3Q2V2M9 1422 aa5.95□□□□□ -1.46
CHD4-209ENST00000542717 IFFO2Q5TF58 517 aa5.95□□□□□ -1.46
CHD4-209ENST00000542717 TRIM52Q96A61 297 aa5.95□□□□□ -1.46
CHD4-209ENST00000542717 KIF27Q86VH2 1401 aa5.94□□□□□ -1.46
CHD4-209ENST00000542717 RICTORQ6R327 1708 aa5.94□□□□□ -1.46
CHD4-209ENST00000542717 C9orf84Q5VXU9 1444 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 SRCAPQ6ZRS2 3230 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 FOXD1Q16676 465 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 ATP10AO60312 1499 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 MAGI2Q86UL8 1455 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 CPS1P31327 1500 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 UGGT2Q9NYU1 1516 aa5.93□□□□□ -1.46
CHD4-209ENST00000542717 RBM33Q96EV2 1170 aaKnown RBP5.92□□□□□ -1.46
CHD4-209ENST00000542717 ZMYM4Q5VZL5 1548 aa5.92□□□□□ -1.46
CHD4-209ENST00000542717 C3P01024 1663 aa5.91□□□□□ -1.46
CHD4-209ENST00000542717 ZRANB1Q9UGI0 708 aa5.91□□□□□ -1.46
CHD4-209ENST00000542717 ABCA8O94911 1581 aa5.91□□□□□ -1.46
CHD4-209ENST00000542717 HECW1Q76N89 1606 aa5.91□□□□□ -1.46
CHD4-209ENST00000542717 ATP10BO94823 1461 aa5.9□□□□□ -1.47
CHD4-209ENST00000542717 SHANK2Q9UPX8 1470 aa5.9□□□□□ -1.47
CHD4-209ENST00000542717 SCAPERQ9BY12 1400 aa5.89□□□□□ -1.47
CHD4-209ENST00000542717 GOLGA3Q08378 1498 aa5.89□□□□□ -1.47
CHD4-209ENST00000542717 PLA2R1Q13018 1463 aa5.89□□□□□ -1.47
CHD4-209ENST00000542717 CFAP74Q9C0B2 1584 aa5.89□□□□□ -1.47
CHD4-209ENST00000542717 SUPT6HQ7KZ85 1726 aaKnown RBP5.88□□□□□ -1.47
CHD4-209ENST00000542717 MEX3CQ5U5Q3 659 aaKnown RBP5.87□□□□□ -1.47
CHD4-209ENST00000542717 P3H3Q8IVL6 736 aa5.87□□□□□ -1.47
CHD4-209ENST00000542717 RAPGEF2Q9Y4G8 1499 aa5.87□□□□□ -1.47
CHD4-209ENST00000542717 TCOF1Q13428 1488 aaKnown RBP5.86□□□□□ -1.47
CHD4-209ENST00000542717 CNTLNQ9NXG0 1405 aa5.86□□□□□ -1.47
CHD4-209ENST00000542717 PLEKHD1A6NEE1 506 aa5.86□□□□□ -1.47
CHD4-209ENST00000542717 RXRBP28702 533 aa5.86□□□□□ -1.47
CHD4-209ENST00000542717 ZNF772Q68DY9 489 aaPredicted RBP5.86□□□□□ -1.47
CHD4-209ENST00000542717 NPATQ14207 1427 aa5.85□□□□□ -1.47
CHD4-209ENST00000542717 NUTM2BA6NNL0 878 aaPredicted RBP5.85□□□□□ -1.47
CHD4-209ENST00000542717 NUTM2EB1AL46 878 aaPredicted RBP5.85□□□□□ -1.47
CHD4-209ENST00000542717 NUTM2DQ5VT03 806 aaPredicted RBP5.85□□□□□ -1.47
CHD4-209ENST00000542717 NUTM2AQ8IVF1 878 aaPredicted RBP5.85□□□□□ -1.47
CHD4-209ENST00000542717 ALKQ9UM73 1620 aa5.85□□□□□ -1.47
CHD4-209ENST00000542717 ZMYM3Q14202 1370 aa5.83□□□□□ -1.48
CHD4-209ENST00000542717 CEP170BQ9Y4F5 1589 aaPredicted RBP5.83□□□□□ -1.48
CHD4-209ENST00000542717 LRRC7Q96NW7 1537 aa5.83□□□□□ -1.48
CHD4-209ENST00000542717 RNF17Q9BXT8 1623 aaKnown RBP5.82□□□□□ -1.48
CHD4-209ENST00000542717 SETBP1Q9Y6X0 1596 aa5.82□□□□□ -1.48
CHD4-209ENST00000542717 YY1P25490 414 aa5.82□□□□□ -1.48
CHD4-209ENST00000542717 ANKLE2Q86XL3 938 aa5.82□□□□□ -1.48
CHD4-209ENST00000542717 AFAP1Q8N556 730 aa5.82□□□□□ -1.48
CHD4-209ENST00000542717 MYO3AQ8NEV4 1616 aa5.81□□□□□ -1.48
CHD4-209ENST00000542717 AGLP35573 1532 aa5.81□□□□□ -1.48
CHD4-209ENST00000542717 EFCAB2Q5VUJ9 269 aa5.81□□□□□ -1.48
CHD4-209ENST00000542717 ZNF142P52746 1687 aaPredicted RBP5.8□□□□□ -1.48
CHD4-209ENST00000542717 ZNF518AQ6AHZ1 1483 aa5.8□□□□□ -1.48
CHD4-209ENST00000542717 SENP3-EIF4A1A0A087X0R7 540 aa5.8□□□□□ -1.48
CHD4-209ENST00000542717 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.79□□□□□ -1.48
CHD4-209ENST00000542717 FAM135BQ49AJ0 1406 aa5.79□□□□□ -1.48
CHD4-209ENST00000542717 VWDEQ8N2E2 1590 aa5.79□□□□□ -1.48
CHD4-209ENST00000542717 JCADQ9P266 1359 aa5.79□□□□□ -1.48
CHD4-209ENST00000542717 PLCH2O75038 1416 aa5.78□□□□□ -1.48
CHD4-209ENST00000542717 NPHP4O75161 1426 aaPredicted RBP5.78□□□□□ -1.48
CHD4-209ENST00000542717 POLR1AO95602 1720 aaPredicted RBP5.78□□□□□ -1.48
CHD4-209ENST00000542717 DIP2CQ9Y2E4 1556 aa5.78□□□□□ -1.48
CHD4-209ENST00000542717 RAPGEF6Q8TEU7 1601 aa5.77□□□□□ -1.48
CHD4-209ENST00000542717 A2ML1A8K2U0 1454 aa5.77□□□□□ -1.49
CHD4-209ENST00000542717 CTTNBP2Q8WZ74 1663 aa5.77□□□□□ -1.49
CHD4-209ENST00000542717 ATAD2Q6PL18 1390 aa5.77□□□□□ -1.49
CHD4-209ENST00000542717 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.77□□□□□ -1.49
CHD4-209ENST00000542717 CDK12Q9NYV4 1490 aaPredicted RBP5.77□□□□□ -1.49
CHD4-209ENST00000542717 NEURL4Q96JN8 1562 aa5.76□□□□□ -1.49
CHD4-209ENST00000542717 REREQ9P2R6 1566 aa5.76□□□□□ -1.49
CHD4-209ENST00000542717 MROH2AA6NES4 1674 aa5.76□□□□□ -1.49
CHD4-209ENST00000542717 GGT6Q6P531 493 aa5.76□□□□□ -1.49
CHD4-209ENST00000542717 THEMISQ8N1K5 641 aaPredicted RBP5.76□□□□□ -1.49
CHD4-209ENST00000542717 DNMT1P26358 1616 aaKnown RBP5.76□□□□□ -1.49
CHD4-209ENST00000542717 SYNMO15061 1565 aa5.76□□□□□ -1.49
CHD4-209ENST00000542717 ABCA6Q8N139 1617 aa5.75□□□□□ -1.49
CHD4-209ENST00000542717 SUPT5HO00267 1087 aaKnown RBP5.75□□□□□ -1.49
CHD4-209ENST00000542717 SPATA31A6Q5VVP1 1343 aa5.74□□□□□ -1.49
CHD4-209ENST00000542717 CDK13Q14004 1512 aaKnown RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 RANGAP1P46060 587 aaPredicted RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 RBM6P78332 1123 aaKnown RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 QTRT2Q9H974 415 aaKnown RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 NUP153P49790 1475 aaKnown RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 CLTCQ00610 1675 aaKnown RBP5.74□□□□□ -1.49
CHD4-209ENST00000542717 RGS12O14924 1447 aa5.74□□□□□ -1.49
CHD4-209ENST00000542717 AFF2P51816 1311 aa5.74□□□□□ -1.49
CHD4-209ENST00000542717 ROBO1Q9Y6N7 1651 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 KDM5CP41229 1560 aa5.73□□□□□ -1.49
CHD4-209ENST00000542717 MLH3Q9UHC1 1453 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms