RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 POTEMA6NI47 508 aa13.56□□□□□ -0.24
PRKDC-205ENST00000535375 PLCB2Q00722 1185 aa13.54□□□□□ -0.24
PRKDC-205ENST00000535375 LCE2DQ5TA82 110 aaPredicted RBP13.54□□□□□ -0.24
PRKDC-205ENST00000535375 POTEGQ6S5H5 508 aa13.54□□□□□ -0.24
PRKDC-205ENST00000535375 TMC2Q8TDI7 906 aa13.53□□□□□ -0.24
PRKDC-205ENST00000535375 ST18O60284 1047 aa13.49□□□□□ -0.25
PRKDC-205ENST00000535375 TMEM92Q6UXU6 159 aa13.46□□□□□ -0.25
PRKDC-205ENST00000535375 C2orf72A6NCS6 295 aa13.45□□□□□ -0.26
PRKDC-205ENST00000535375 PDE4AP27815 886 aa13.44□□□□□ -0.26
PRKDC-205ENST00000535375 GPHNQ9NQX3 736 aaPredicted RBP13.43□□□□□ -0.26
PRKDC-205ENST00000535375 CADPS2Q86UW7 1296 aa13.41□□□□□ -0.26
PRKDC-205ENST00000535375 HAP1P54257 671 aaPredicted RBP13.4□□□□□ -0.26
PRKDC-205ENST00000535375 TSHZ2Q9NRE2 1034 aa13.4□□□□□ -0.26
PRKDC-205ENST00000535375 KIF3CO14782 793 aa13.39□□□□□ -0.27
PRKDC-205ENST00000535375 LARP6Q9BRS8 491 aaKnown RBP13.39□□□□□ -0.27
PRKDC-205ENST00000535375 CRISPLD2Q9H0B8 497 aa13.39□□□□□ -0.27
PRKDC-205ENST00000535375 NCKAP5LQ9HCH0 1330 aa13.37□□□□□ -0.27
PRKDC-205ENST00000535375 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
PRKDC-205ENST00000535375 FOXK1P85037 733 aa13.35□□□□□ -0.27
PRKDC-205ENST00000535375 HOXB3P14651 431 aaPredicted RBP13.34□□□□□ -0.27
PRKDC-205ENST00000535375 ZNF710Q8N1W2 664 aa13.34□□□□□ -0.27
PRKDC-205ENST00000535375 DSG2Q14126 1118 aa13.33□□□□□ -0.28
PRKDC-205ENST00000535375 DDX27Q96GQ7 796 aaKnown RBP13.33□□□□□ -0.28
PRKDC-205ENST00000535375 PCDH10Q9P2E7 1040 aa13.33□□□□□ -0.28
PRKDC-205ENST00000535375 PPP1R15BQ5SWA1 713 aa13.32□□□□□ -0.28
PRKDC-205ENST00000535375 PLPP6Q8IY26 295 aa13.32□□□□□ -0.28
PRKDC-205ENST00000535375 MARVELD3Q96A59 401 aa13.32□□□□□ -0.28
PRKDC-205ENST00000535375 WDR70Q9NW82 654 aa13.32□□□□□ -0.28
PRKDC-205ENST00000535375 RIMBP2O15034 1052 aa13.31□□□□□ -0.28
PRKDC-205ENST00000535375 EMP3P54852 163 aa13.29□□□□□ -0.28
PRKDC-205ENST00000535375 MFSD10Q14728 455 aa13.28□□□□□ -0.28
PRKDC-205ENST00000535375 CDAN1Q8IWY9 1227 aa13.24□□□□□ -0.29
PRKDC-205ENST00000535375 HOXB1P14653 301 aaPredicted RBP13.22□□□□□ -0.29
PRKDC-205ENST00000535375 ZSWIM6Q9HCJ5 1215 aa13.22□□□□□ -0.29
PRKDC-205ENST00000535375 SLC34A2O95436 690 aa13.2□□□□□ -0.3
PRKDC-205ENST00000535375 PLSCR2Q9NRY7 297 aa13.2□□□□□ -0.3
PRKDC-205ENST00000535375 FAM205CA6NFA0 338 aa13.18□□□□□ -0.3
PRKDC-205ENST00000535375 TBC1D12O60347 775 aa13.18□□□□□ -0.3
PRKDC-205ENST00000535375 E2F4Q16254 413 aa13.16□□□□□ -0.3
PRKDC-205ENST00000535375 UPF1Q92900 1129 aaKnown RBP eCLIP13.16□□□□□ -0.3
PRKDC-205ENST00000535375 ARSIQ5FYB1 569 aa13.15□□□□□ -0.3
PRKDC-205ENST00000535375 VSIG10Q8N0Z9 540 aa13.15□□□□□ -0.3
PRKDC-205ENST00000535375 PTCD2Q8WV60 388 aaKnown RBP13.15□□□□□ -0.3
PRKDC-205ENST00000535375 HS3ST6Q96QI5 342 aa13.15□□□□□ -0.3
PRKDC-205ENST00000535375 PCDHGA4Q9Y5G9 962 aa13.15□□□□□ -0.3
PRKDC-205ENST00000535375 GPR153Q6NV75 609 aa13.14□□□□□ -0.31
PRKDC-205ENST00000535375 ERBB3P21860 1342 aa13.13□□□□□ -0.31
PRKDC-205ENST00000535375 MAP3K9P80192 1104 aa13.12□□□□□ -0.31
PRKDC-205ENST00000535375 CAMK2BQ13554 666 aa13.11□□□□□ -0.31
PRKDC-205ENST00000535375 OXER1Q8TDS5 423 aa13.11□□□□□ -0.31
PRKDC-205ENST00000535375 POTEB3A0JP26 581 aa13.09□□□□□ -0.31
PRKDC-205ENST00000535375 POTEBQ6S5H4 581 aa13.09□□□□□ -0.31
PRKDC-205ENST00000535375 EMILIN3Q9NT22 766 aa13.09□□□□□ -0.31
PRKDC-205ENST00000535375 KHSRPQ92945 711 aaKnown RBP eCLIP13.08□□□□□ -0.324e-8■■■■□ 25.2
PRKDC-205ENST00000535375 KDM2AQ9Y2K7 1162 aa13.08□□□□□ -0.32
PRKDC-205ENST00000535375 ZNF316A6NFI3 1004 aaPredicted RBP13.07□□□□□ -0.32
PRKDC-205ENST00000535375 NUDT7P0C024 238 aa13.06□□□□□ -0.32
PRKDC-205ENST00000535375 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
PRKDC-205ENST00000535375 P3H3Q8IVL6 736 aa13.04□□□□□ -0.32
PRKDC-205ENST00000535375 DPYSL4O14531 572 aa13.03□□□□□ -0.32
PRKDC-205ENST00000535375 EVI5O60447 810 aa13.01□□□□□ -0.33
PRKDC-205ENST00000535375 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
PRKDC-205ENST00000535375 KCNV2Q8TDN2 545 aa12.99□□□□□ -0.33
PRKDC-205ENST00000535375 ARHGEF1Q92888 912 aaKnown RBP12.98□□□□□ -0.33
PRKDC-205ENST00000535375 KRTAP3-3Q9BYR6 98 aa12.96□□□□□ -0.33
PRKDC-205ENST00000535375 KRTAP3-2Q9BYR7 98 aa12.96□□□□□ -0.33
PRKDC-205ENST00000535375 LHX6Q9UPM6 363 aa12.96□□□□□ -0.33
PRKDC-205ENST00000535375 ARIH1Q9Y4X5 557 aaPredicted RBP12.96□□□□□ -0.33
PRKDC-205ENST00000535375 SPDYE16A6NNV3 312 aaPredicted RBP12.95□□□□□ -0.34
PRKDC-205ENST00000535375 KDM4FA0A1W2PPD8 638 aa12.94□□□□□ -0.34
PRKDC-205ENST00000535375 ZNF687Q8N1G0 1237 aa12.94□□□□□ -0.34
PRKDC-205ENST00000535375 PSDA5PKW4 1024 aaPredicted RBP12.93□□□□□ -0.34
PRKDC-205ENST00000535375 ANO8Q9HCE9 1232 aaPredicted RBP12.92□□□□□ -0.34
PRKDC-205ENST00000535375 PDIA6Q15084 440 aa12.91□□□□□ -0.34
PRKDC-205ENST00000535375 SPNS2Q8IVW8 549 aa12.89□□□□□ -0.35
PRKDC-205ENST00000535375 PPP4R3BQ5MIZ7 849 aa12.87□□□□□ -0.35
PRKDC-205ENST00000535375 ZNF454Q8N9F8 522 aa12.87□□□□□ -0.35
PRKDC-205ENST00000535375 JPH4Q96JJ6 628 aa12.84□□□□□ -0.35
PRKDC-205ENST00000535375 DDX12PQ92771 950 aa12.83□□□□□ -0.36
PRKDC-205ENST00000535375 PTGER2P43116 358 aa12.82□□□□□ -0.36
PRKDC-205ENST00000535375 FOSBP53539 338 aa12.82□□□□□ -0.36
PRKDC-205ENST00000535375 GRXCR2A6NFK2 248 aa12.81□□□□□ -0.36
PRKDC-205ENST00000535375 PHF14O94880 888 aa12.81□□□□□ -0.36
PRKDC-205ENST00000535375 MMRN1Q13201 1228 aa12.81□□□□□ -0.36
PRKDC-205ENST00000535375 PBX2P40425 430 aa12.79□□□□□ -0.36
PRKDC-205ENST00000535375 TYW1BQ6NUM6 668 aa12.79□□□□□ -0.36
PRKDC-205ENST00000535375 ZDHHC16Q969W1 377 aa12.79□□□□□ -0.36
PRKDC-205ENST00000535375 EPAS1Q99814 870 aa12.79□□□□□ -0.36
PRKDC-205ENST00000535375 FBXW7Q969H0 707 aa12.78□□□□□ -0.36
PRKDC-205ENST00000535375 KCNH8Q96L42 1107 aa12.78□□□□□ -0.36
PRKDC-205ENST00000535375 PCDHGA10Q9Y5H3 936 aa12.78□□□□□ -0.36
PRKDC-205ENST00000535375 SEMA3EO15041 775 aa12.76□□□□□ -0.37
PRKDC-205ENST00000535375 NBR1Q14596 966 aa12.76□□□□□ -0.37
PRKDC-205ENST00000535375 ANKRD13DQ6ZTN6 518 aa12.75□□□□□ -0.37
PRKDC-205ENST00000535375 LSM11P83369 360 aaKnown RBP eCLIP12.74□□□□□ -0.37
PRKDC-205ENST00000535375 RBM33Q96EV2 1170 aaKnown RBP12.73□□□□□ -0.37
PRKDC-205ENST00000535375 AXIN2Q9Y2T1 843 aa12.73□□□□□ -0.37
PRKDC-205ENST00000535375 PTPREP23469 700 aa12.72□□□□□ -0.37
PRKDC-205ENST00000535375 MLLT3P42568 568 aaPredicted RBP12.72□□□□□ -0.37
PRKDC-205ENST00000535375 SMYD5Q6GMV2 418 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms