RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 ZFYVE16Q7Z3T8 1539 aa16.84■□□□□ 0.29
CSDE1-217ENST00000534699 REREQ9P2R6 1566 aa16.83■□□□□ 0.28
CSDE1-217ENST00000534699 KDM5CP41229 1560 aa16.81■□□□□ 0.28
CSDE1-217ENST00000534699 ZNF518AQ6AHZ1 1483 aa16.81■□□□□ 0.28
CSDE1-217ENST00000534699 CDC42BPBQ9Y5S2 1711 aa16.8■□□□□ 0.28
CSDE1-217ENST00000534699 SCAPERQ9BY12 1400 aa16.79■□□□□ 0.28
CSDE1-217ENST00000534699 ARHGAP5Q13017 1502 aa16.78■□□□□ 0.28
CSDE1-217ENST00000534699 PLEKHH2Q8IVE3 1493 aa16.77■□□□□ 0.28
CSDE1-217ENST00000534699 CDC42BPAQ5VT25 1732 aa16.77■□□□□ 0.28
CSDE1-217ENST00000534699 ITSN2Q9NZM3 1697 aa16.77■□□□□ 0.28
CSDE1-217ENST00000534699 RAPGEF3O95398 923 aa16.76■□□□□ 0.27
CSDE1-217ENST00000534699 ATP10AO60312 1499 aa16.76■□□□□ 0.27
CSDE1-217ENST00000534699 ABCC1P33527 1531 aa16.75■□□□□ 0.27
CSDE1-217ENST00000534699 MLH3Q9UHC1 1453 aa16.75■□□□□ 0.27
CSDE1-217ENST00000534699 C9orf84Q5VXU9 1444 aa16.75■□□□□ 0.27
CSDE1-217ENST00000534699 HECW2Q9P2P5 1572 aa16.75■□□□□ 0.27
CSDE1-217ENST00000534699 EHBP1L1Q8N3D4 1523 aa16.74■□□□□ 0.27
CSDE1-217ENST00000534699 ATP1B4Q9UN42 357 aaPredicted RBP16.74■□□□□ 0.27
CSDE1-217ENST00000534699 KIAA1107Q9UPP5 1409 aa16.72■□□□□ 0.27
CSDE1-217ENST00000534699 AGLP35573 1532 aa16.72■□□□□ 0.27
CSDE1-217ENST00000534699 MAP3K1Q13233 1512 aa16.71■□□□□ 0.27
CSDE1-217ENST00000534699 CEP162Q5TB80 1403 aa16.71■□□□□ 0.27
CSDE1-217ENST00000534699 PTPRMP28827 1452 aa16.71■□□□□ 0.27
CSDE1-217ENST00000534699 MADDQ8WXG6 1647 aa16.69■□□□□ 0.26
CSDE1-217ENST00000534699 ARHGEF12Q9NZN5 1544 aa16.68■□□□□ 0.26
CSDE1-217ENST00000534699 GPATCH8Q9UKJ3 1502 aaKnown RBP16.67■□□□□ 0.26
CSDE1-217ENST00000534699 FER1L4A9Z1Z3 1794 aa16.66■□□□□ 0.26
CSDE1-217ENST00000534699 DIP2CQ9Y2E4 1556 aa16.66■□□□□ 0.26
CSDE1-217ENST00000534699 YEATS2Q9ULM3 1422 aa16.65■□□□□ 0.26
CSDE1-217ENST00000534699 RIMS1Q86UR5 1692 aaKnown RBP16.65■□□□□ 0.26
CSDE1-217ENST00000534699 SUPT6HQ7KZ85 1726 aaKnown RBP16.64■□□□□ 0.25
CSDE1-217ENST00000534699 SAMD9LQ8IVG5 1584 aa16.64■□□□□ 0.25
CSDE1-217ENST00000534699 MTUS2Q5JR59 1369 aa16.64■□□□□ 0.25
CSDE1-217ENST00000534699 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
CSDE1-217ENST00000534699 CCNB3Q8WWL7 1395 aa16.63■□□□□ 0.25
CSDE1-217ENST00000534699 ARID4BQ4LE39 1312 aaPredicted RBP16.62■□□□□ 0.25
CSDE1-217ENST00000534699 KIDINS220Q9ULH0 1771 aa16.62■□□□□ 0.25
CSDE1-217ENST00000534699 ABCA6Q8N139 1617 aa16.62■□□□□ 0.25
CSDE1-217ENST00000534699 VPS8Q8N3P4 1428 aa16.61■□□□□ 0.25
CSDE1-217ENST00000534699 TIAM1Q13009 1591 aa16.61■□□□□ 0.25
CSDE1-217ENST00000534699 SIGLEC1Q9BZZ2 1709 aa16.6■□□□□ 0.25
CSDE1-217ENST00000534699 RSPH4AQ5TD94 716 aa16.6■□□□□ 0.25
CSDE1-217ENST00000534699 INO80Q9ULG1 1556 aaPredicted RBP16.6■□□□□ 0.25
CSDE1-217ENST00000534699 CNTLNQ9NXG0 1405 aa16.59■□□□□ 0.25
CSDE1-217ENST00000534699 FAM135AQ9P2D6 1515 aa16.59■□□□□ 0.25
CSDE1-217ENST00000534699 MROH2AA6NES4 1674 aa16.59■□□□□ 0.25
CSDE1-217ENST00000534699 ADGBQ8N7X0 1667 aa16.59■□□□□ 0.25
CSDE1-217ENST00000534699 RTEL1-TNFRSF6BF6WH68 1400 aa16.59■□□□□ 0.25
CSDE1-217ENST00000534699 TRAPPC8Q9Y2L5 1435 aa16.58■□□□□ 0.24
CSDE1-217ENST00000534699 PPP6R1Q9UPN7 881 aa16.56■□□□□ 0.24
CSDE1-217ENST00000534699 SYCP2Q9BX26 1530 aa16.56■□□□□ 0.24
CSDE1-217ENST00000534699 SETD1BQ9UPS6 1966 aaKnown RBP16.56■□□□□ 0.24
CSDE1-217ENST00000534699 ATP7AQ04656 1500 aa16.55■□□□□ 0.24
CSDE1-217ENST00000534699 CFDP1Q9UEE9 299 aaPredicted RBP16.55■□□□□ 0.24
CSDE1-217ENST00000534699 PREX1Q8TCU6 1659 aa16.55■□□□□ 0.24
CSDE1-217ENST00000534699 ARHGEF5Q12774 1597 aa16.55■□□□□ 0.24
CSDE1-217ENST00000534699 PLXNC1O60486 1568 aa16.54■□□□□ 0.24
CSDE1-217ENST00000534699 AFAP1Q8N556 730 aa16.53■□□□□ 0.24
CSDE1-217ENST00000534699 SPAG9O60271 1321 aaKnown RBP16.52■□□□□ 0.23
CSDE1-217ENST00000534699 NCOA2Q15596 1464 aa16.51■□□□□ 0.23
CSDE1-217ENST00000534699 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
CSDE1-217ENST00000534699 LMTK3Q96Q04 1460 aa16.51■□□□□ 0.23
CSDE1-217ENST00000534699 MBD5Q9P267 1494 aa16.5■□□□□ 0.23
CSDE1-217ENST00000534699 MIA2Q96PC5 1412 aa16.5■□□□□ 0.23
CSDE1-217ENST00000534699 MAST1Q9Y2H9 1570 aa16.49■□□□□ 0.23
CSDE1-217ENST00000534699 A2MP01023 1474 aa16.48■□□□□ 0.23
CSDE1-217ENST00000534699 CCDC141Q6ZP82 1450 aa16.48■□□□□ 0.23
CSDE1-217ENST00000534699 NPATQ14207 1427 aa16.48■□□□□ 0.23
CSDE1-217ENST00000534699 C3P01024 1663 aa16.47■□□□□ 0.23
CSDE1-217ENST00000534699 MYT1LQ9UL68 1186 aa16.46■□□□□ 0.23
CSDE1-217ENST00000534699 CAMSAP2Q08AD1 1489 aa16.45■□□□□ 0.22
CSDE1-217ENST00000534699 ESF1Q9H501 851 aaKnown RBP16.43■□□□□ 0.22
CSDE1-217ENST00000534699 ZNF777Q9ULD5 760 aaPredicted RBP16.42■□□□□ 0.22
CSDE1-217ENST00000534699 HNRNPMP52272 730 aaKnown RBP eCLIP16.42■□□□□ 0.22
CSDE1-217ENST00000534699 DHX29Q7Z478 1369 aaKnown RBP16.41■□□□□ 0.22
CSDE1-217ENST00000534699 UHRF1BP1Q6BDS2 1440 aa16.41■□□□□ 0.22
CSDE1-217ENST00000534699 EIF2AK4Q9P2K8 1649 aaKnown RBP16.41■□□□□ 0.22
CSDE1-217ENST00000534699 MYOM3Q5VTT5 1437 aa16.4■□□□□ 0.22
CSDE1-217ENST00000534699 ZNF142P52746 1687 aaPredicted RBP16.38■□□□□ 0.21
CSDE1-217ENST00000534699 DMRT2Q9Y5R5 561 aa16.38■□□□□ 0.21
CSDE1-217ENST00000534699 SHANK2Q9UPX8 1470 aa16.37■□□□□ 0.21
CSDE1-217ENST00000534699 MLECQ14165 292 aa16.37■□□□□ 0.21
CSDE1-217ENST00000534699 ZC3H13Q5T200 1668 aaKnown RBP16.37■□□□□ 0.21
CSDE1-217ENST00000534699 APLP2Q06481 763 aa16.36■□□□□ 0.21
CSDE1-217ENST00000534699 CLTCQ00610 1675 aaKnown RBP16.36■□□□□ 0.21
CSDE1-217ENST00000534699 RNF17Q9BXT8 1623 aaKnown RBP16.35■□□□□ 0.21
CSDE1-217ENST00000534699 LOC105371045A0A1W2PR82 267 aa16.34■□□□□ 0.21
CSDE1-217ENST00000534699 TSPY4P0CV99 314 aa16.34■□□□□ 0.21
CSDE1-217ENST00000534699 TSPY10P0CW01 314 aa16.34■□□□□ 0.21
CSDE1-217ENST00000534699 PTPRTO14522 1441 aa16.34■□□□□ 0.21
CSDE1-217ENST00000534699 CROCC2H7BZ55 1655 aa16.34■□□□□ 0.21
CSDE1-217ENST00000534699 TCOF1Q13428 1488 aaKnown RBP16.34■□□□□ 0.21
CSDE1-217ENST00000534699 KDM5DQ9BY66 1539 aa16.33■□□□□ 0.2
CSDE1-217ENST00000534699 ZMYM3Q14202 1370 aa16.32■□□□□ 0.2
CSDE1-217ENST00000534699 DUOX2Q9NRD8 1548 aa16.3■□□□□ 0.2
CSDE1-217ENST00000534699 ZNF644Q9H582 1327 aaPredicted RBP16.3■□□□□ 0.2
CSDE1-217ENST00000534699 PLA2R1Q13018 1463 aa16.3■□□□□ 0.2
CSDE1-217ENST00000534699 PTPN23Q9H3S7 1636 aa16.3■□□□□ 0.2
CSDE1-217ENST00000534699 PTPRKQ15262 1439 aa16.3■□□□□ 0.2
CSDE1-217ENST00000534699 STRCQ7RTU9 1775 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms