RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 NISCHQ9Y2I1 1504 aa25.85■■□□□ 1.73
CSDE1-217ENST00000534699 CCDC180Q9P1Z9 1646 aa23.33■■□□□ 1.33
CSDE1-217ENST00000534699 ABCC9O60706 1549 aa22.64■■□□□ 1.21
CSDE1-217ENST00000534699 RB1CC1Q8TDY2 1594 aa21.98■■□□□ 1.11
CSDE1-217ENST00000534699 NACADO15069 1562 aa21.94■■□□□ 1.1
CSDE1-217ENST00000534699 MYO15BQ96JP2 1530 aa21.86■■□□□ 1.09
CSDE1-217ENST00000534699 DCAF1Q9Y4B6 1507 aa21.61■■□□□ 1.05
CSDE1-217ENST00000534699 ZCCHC6Q5VYS8 1495 aaKnown RBP21.49■■□□□ 1.03
CSDE1-217ENST00000534699 UNC13AQ9UPW8 1703 aa21.38■■□□□ 1.01
CSDE1-217ENST00000534699 SHROOM4Q9ULL8 1493 aa21.31■■□□□ 1
CSDE1-217ENST00000534699 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
CSDE1-217ENST00000534699 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
CSDE1-217ENST00000534699 PABPN1Q86U42 306 aaKnown RBP eCLIP20.97■□□□□ 0.95
CSDE1-217ENST00000534699 DNAJC5BQ9UF47 199 aa20.9■□□□□ 0.94
CSDE1-217ENST00000534699 SCRIBQ14160 1630 aa20.89■□□□□ 0.94
CSDE1-217ENST00000534699 EIF4G1Q04637 1599 aaKnown RBP20.67■□□□□ 0.9
CSDE1-217ENST00000534699 CC2D2AQ9P2K1 1620 aa20.62■□□□□ 0.89
CSDE1-217ENST00000534699 CECR2Q9BXF3 1484 aa20.49■□□□□ 0.87
CSDE1-217ENST00000534699 NCAPD3P42695 1498 aa20.17■□□□□ 0.82
CSDE1-217ENST00000534699 SMARCA2P51531 1590 aa20.14■□□□□ 0.81
CSDE1-217ENST00000534699 SMARCA4P51532 1647 aa20.13■□□□□ 0.81
CSDE1-217ENST00000534699 BAZ1AQ9NRL2 1556 aaPredicted RBP20.12■□□□□ 0.81
CSDE1-217ENST00000534699 HMGXB3Q12766 1538 aa20.1■□□□□ 0.81
CSDE1-217ENST00000534699 PEG3Q9GZU2 1588 aa20.07■□□□□ 0.8
CSDE1-217ENST00000534699 ATAD2BQ9ULI0 1458 aa20.04■□□□□ 0.8
CSDE1-217ENST00000534699 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
CSDE1-217ENST00000534699 MROH2BQ7Z745 1585 aa19.79■□□□□ 0.76
CSDE1-217ENST00000534699 CUX2O14529 1486 aa19.74■□□□□ 0.75
CSDE1-217ENST00000534699 LAMC3Q9Y6N6 1575 aa19.73■□□□□ 0.75
CSDE1-217ENST00000534699 ERCC6Q03468 1493 aa19.63■□□□□ 0.73
CSDE1-217ENST00000534699 WIZO95785 1651 aa19.56■□□□□ 0.72
CSDE1-217ENST00000534699 PDS5BQ9NTI5 1447 aa19.54■□□□□ 0.72
CSDE1-217ENST00000534699 TOP2AP11388 1531 aaKnown RBP19.5■□□□□ 0.71
CSDE1-217ENST00000534699 RSF1Q96T23 1441 aaPredicted RBP19.49■□□□□ 0.71
CSDE1-217ENST00000534699 CADPSQ9ULU8 1353 aa19.49■□□□□ 0.71
CSDE1-217ENST00000534699 NESP48681 1621 aa19.48■□□□□ 0.71
CSDE1-217ENST00000534699 THOC2Q8NI27 1593 aaKnown RBP19.48■□□□□ 0.71
CSDE1-217ENST00000534699 KIF21AQ7Z4S6 1674 aa19.41■□□□□ 0.7
CSDE1-217ENST00000534699 PRDM2Q13029 1718 aa19.36■□□□□ 0.69
CSDE1-217ENST00000534699 CFTRP13569 1480 aa19.35■□□□□ 0.69
CSDE1-217ENST00000534699 MRC2Q9UBG0 1479 aa19.33■□□□□ 0.69
CSDE1-217ENST00000534699 WDR62O43379 1518 aa19.31■□□□□ 0.68
CSDE1-217ENST00000534699 CEP164Q9UPV0 1460 aa19.27■□□□□ 0.68
CSDE1-217ENST00000534699 DNAJC5Q9H3Z4 198 aa19.26■□□□□ 0.67
CSDE1-217ENST00000534699 FANCD2Q9BXW9 1451 aa19.22■□□□□ 0.67
CSDE1-217ENST00000534699 CCDC88BA6NC98 1476 aa19.14■□□□□ 0.65
CSDE1-217ENST00000534699 ABCC8Q09428 1581 aa19.11■□□□□ 0.65
CSDE1-217ENST00000534699 URB2Q14146 1524 aaKnown RBP19.02■□□□□ 0.63
CSDE1-217ENST00000534699 DNMBPQ6XZF7 1577 aa18.95■□□□□ 0.62
CSDE1-217ENST00000534699 IFT140Q96RY7 1462 aa18.94■□□□□ 0.62
CSDE1-217ENST00000534699 TOPBP1Q92547 1522 aa18.91■□□□□ 0.62
CSDE1-217ENST00000534699 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
CSDE1-217ENST00000534699 TARBP1Q13395 1621 aaKnown RBP18.76■□□□□ 0.59
CSDE1-217ENST00000534699 EIF4G3O43432 1585 aaKnown RBP18.7■□□□□ 0.58
CSDE1-217ENST00000534699 POLA1P09884 1462 aaPredicted RBP18.69■□□□□ 0.58
CSDE1-217ENST00000534699 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
CSDE1-217ENST00000534699 ZNF608Q9ULD9 1512 aaPredicted RBP18.65■□□□□ 0.58
CSDE1-217ENST00000534699 CUX1P39880 1505 aa18.62■□□□□ 0.57
CSDE1-217ENST00000534699 SOGA1O94964 1423 aa18.62■□□□□ 0.57
CSDE1-217ENST00000534699 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
CSDE1-217ENST00000534699 BIVM-ERCC5R4GMW8 1640 aa18.55■□□□□ 0.56
CSDE1-217ENST00000534699 MAGI1Q96QZ7 1491 aaPredicted RBP18.55■□□□□ 0.56
CSDE1-217ENST00000534699 CHD1O14646 1710 aa18.52■□□□□ 0.56
CSDE1-217ENST00000534699 ABCA10Q8WWZ4 1543 aa18.52■□□□□ 0.56
CSDE1-217ENST00000534699 GRIN2BQ13224 1484 aa18.51■□□□□ 0.55
CSDE1-217ENST00000534699 TOP2BQ02880 1626 aa18.5■□□□□ 0.55
CSDE1-217ENST00000534699 AQRO60306 1485 aaKnown RBP eCLIP18.5■□□□□ 0.552e-7■■■■□ 24.7
CSDE1-217ENST00000534699 SUPT5HO00267 1087 aaKnown RBP18.5■□□□□ 0.55
CSDE1-217ENST00000534699 RAD54L2Q9Y4B4 1467 aa18.5■□□□□ 0.55
CSDE1-217ENST00000534699 PBRM1Q86U86 1689 aa18.47■□□□□ 0.55
CSDE1-217ENST00000534699 ABCA5Q8WWZ7 1642 aa18.47■□□□□ 0.55
CSDE1-217ENST00000534699 RIMBP3CA6NJZ7 1639 aa18.44■□□□□ 0.54
CSDE1-217ENST00000534699 RIMBP3BA6NNM3 1639 aa18.44■□□□□ 0.54
CSDE1-217ENST00000534699 RIMBP3Q9UFD9 1639 aa18.44■□□□□ 0.54
CSDE1-217ENST00000534699 WRNQ14191 1432 aaPredicted RBP eCLIP18.44■□□□□ 0.542e-7■□□□□ 9.9
CSDE1-217ENST00000534699 SYNJ1O43426 1573 aa18.43■□□□□ 0.54
CSDE1-217ENST00000534699 SYNJ2O15056 1496 aa18.42■□□□□ 0.54
CSDE1-217ENST00000534699 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
CSDE1-217ENST00000534699 SNAPC4Q5SXM2 1469 aa18.41■□□□□ 0.54
CSDE1-217ENST00000534699 TDRD9Q8NDG6 1382 aaKnown RBP18.4■□□□□ 0.54
CSDE1-217ENST00000534699 ARHGEF11O15085 1522 aa18.39■□□□□ 0.53
CSDE1-217ENST00000534699 CLASP1Q7Z460 1538 aa18.39■□□□□ 0.53
CSDE1-217ENST00000534699 ERICH3Q5RHP9 1530 aa18.35■□□□□ 0.53
CSDE1-217ENST00000534699 CHMP7Q8WUX9 453 aaPredicted RBP18.29■□□□□ 0.52
CSDE1-217ENST00000534699 ADAMTS12P58397 1594 aa18.29■□□□□ 0.52
CSDE1-217ENST00000534699 FHAD1B1AJZ9 1412 aa18.26■□□□□ 0.51
CSDE1-217ENST00000534699 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
CSDE1-217ENST00000534699 GRIN2AQ12879 1464 aa18.23■□□□□ 0.51
CSDE1-217ENST00000534699 FBLN2P98095 1184 aa18.22■□□□□ 0.51
CSDE1-217ENST00000534699 NUP160Q12769 1436 aa18.21■□□□□ 0.51
CSDE1-217ENST00000534699 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
CSDE1-217ENST00000534699 SHROOM2Q13796 1616 aa18.17■□□□□ 0.5
CSDE1-217ENST00000534699 CUL7Q14999 1698 aa18.16■□□□□ 0.5
CSDE1-217ENST00000534699 CEP170Q5SW79 1584 aa18.11■□□□□ 0.49
CSDE1-217ENST00000534699 KIF27Q86VH2 1401 aa18.11■□□□□ 0.49
CSDE1-217ENST00000534699 CYB5RLQ6IPT4 315 aa18.05■□□□□ 0.48
CSDE1-217ENST00000534699 RUSC2Q8N2Y8 1516 aa18.01■□□□□ 0.47
CSDE1-217ENST00000534699 IGF1RP08069 1367 aa17.99■□□□□ 0.47
CSDE1-217ENST00000534699 KIAA0586Q9BVV6 1533 aa17.98■□□□□ 0.47
CSDE1-217ENST00000534699 JPH4Q96JJ6 628 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms