RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ABCC5O15440 1437 aa26.89■■□□□ 1.89
VPS28-213ENST00000530983 L3MBTL2Q969R5 705 aa26.89■■□□□ 1.89
VPS28-213ENST00000530983 RAPGEF6Q8TEU7 1601 aa26.88■■□□□ 1.89
VPS28-213ENST00000530983 EIF4G2P78344 907 aaKnown RBP eCLIP26.88■■□□□ 1.89
VPS28-213ENST00000530983 FOXD1Q16676 465 aa26.88■■□□□ 1.89
VPS28-213ENST00000530983 ANKRD30BQ9BXX2 1392 aa26.85■■□□□ 1.89
VPS28-213ENST00000530983 RPRD2Q5VT52 1461 aaKnown RBP26.85■■□□□ 1.89
VPS28-213ENST00000530983 ZNF644Q9H582 1327 aaPredicted RBP26.83■■□□□ 1.89
VPS28-213ENST00000530983 GRIN2AQ12879 1464 aa26.83■■□□□ 1.88
VPS28-213ENST00000530983 CNTLNQ9NXG0 1405 aa26.82■■□□□ 1.88
VPS28-213ENST00000530983 EIF4G3O43432 1585 aaKnown RBP26.82■■□□□ 1.88
VPS28-213ENST00000530983 TEX14Q8IWB6 1497 aa26.82■■□□□ 1.88
VPS28-213ENST00000530983 NCOA1Q15788 1441 aa26.8■■□□□ 1.88
VPS28-213ENST00000530983 HNRNPUQ00839 825 aaKnown RBP eCLIP26.78■■□□□ 1.88
VPS28-213ENST00000530983 C11orf95C9JLR9 678 aaPredicted RBP26.77■■□□□ 1.88
VPS28-213ENST00000530983 CCDC7Q96M83 1385 aa26.75■■□□□ 1.87
VPS28-213ENST00000530983 NBPF8Q3BBV2 869 aa26.75■■□□□ 1.87
VPS28-213ENST00000530983 ERCC6Q03468 1493 aa26.75■■□□□ 1.87
VPS28-213ENST00000530983 CDK11AQ9UQ88 783 aaPredicted RBP26.74■■□□□ 1.87
VPS28-213ENST00000530983 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
VPS28-213ENST00000530983 PRG4Q92954 1404 aaPredicted RBP26.72■■□□□ 1.87
VPS28-213ENST00000530983 POLR1AO95602 1720 aaPredicted RBP26.72■■□□□ 1.87
VPS28-213ENST00000530983 TROQ12816 1431 aaPredicted RBP26.72■■□□□ 1.87
VPS28-213ENST00000530983 CAMSAP2Q08AD1 1489 aa26.72■■□□□ 1.87
VPS28-213ENST00000530983 ITSN2Q9NZM3 1697 aa26.72■■□□□ 1.87
VPS28-213ENST00000530983 SLC4A1APQ9BWU0 796 aaKnown RBP26.71■■□□□ 1.87
VPS28-213ENST00000530983 ADGBQ8N7X0 1667 aa26.7■■□□□ 1.86
VPS28-213ENST00000530983 PZPP20742 1482 aa26.7■■□□□ 1.86
VPS28-213ENST00000530983 SPATA31E1Q6ZUB1 1445 aa26.69■■□□□ 1.86
VPS28-213ENST00000530983 CCDC184Q52MB2 194 aa26.68■■□□□ 1.86
VPS28-213ENST00000530983 ADCY10Q96PN6 1610 aa26.67■■□□□ 1.86
VPS28-213ENST00000530983 CEP170Q5SW79 1584 aa26.67■■□□□ 1.86
VPS28-213ENST00000530983 KIF14Q15058 1648 aa26.66■■□□□ 1.86
VPS28-213ENST00000530983 PLB1Q6P1J6 1458 aa26.66■■□□□ 1.86
VPS28-213ENST00000530983 PRKRIP1Q9H875 184 aaPredicted RBP26.66■■□□□ 1.86
VPS28-213ENST00000530983 CROCC2H7BZ55 1655 aa26.66■■□□□ 1.86
VPS28-213ENST00000530983 SYNJ2O15056 1496 aa26.65■■□□□ 1.86
VPS28-213ENST00000530983 GPATCH8Q9UKJ3 1502 aaKnown RBP26.65■■□□□ 1.86
VPS28-213ENST00000530983 CFDP1Q9UEE9 299 aaPredicted RBP26.63■■□□□ 1.85
VPS28-213ENST00000530983 ADGRL2O95490 1459 aa26.62■■□□□ 1.85
VPS28-213ENST00000530983 KIF7Q2M1P5 1343 aa26.61■■□□□ 1.85
VPS28-213ENST00000530983 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
VPS28-213ENST00000530983 MBD5Q9P267 1494 aa26.59■■□□□ 1.85
VPS28-213ENST00000530983 RBM19Q9Y4C8 960 aaKnown RBP26.59■■□□□ 1.85
VPS28-213ENST00000530983 BCL11AQ9H165 835 aa26.58■■□□□ 1.85
VPS28-213ENST00000530983 KIAA1107Q9UPP5 1409 aa26.55■■□□□ 1.84
VPS28-213ENST00000530983 CARMIL2Q6F5E8 1435 aa26.54■■□□□ 1.84
VPS28-213ENST00000530983 IRX6P78412 446 aaPredicted RBP26.53■■□□□ 1.84
VPS28-213ENST00000530983 MRS2Q9HD23 443 aa26.53■■□□□ 1.84
VPS28-213ENST00000530983 ZNF777Q9ULD5 760 aaPredicted RBP26.53■■□□□ 1.84
VPS28-213ENST00000530983 NUP160Q12769 1436 aa26.53■■□□□ 1.84
VPS28-213ENST00000530983 FAM9BQ8IZU0 186 aa26.51■■□□□ 1.83
VPS28-213ENST00000530983 CDC42BPAQ5VT25 1732 aa26.5■■□□□ 1.83
VPS28-213ENST00000530983 ANKRD30AQ9BXX3 1397 aa26.5■■□□□ 1.83
VPS28-213ENST00000530983 BCORL1Q5H9F3 1711 aa26.48■■□□□ 1.83
VPS28-213ENST00000530983 ZBED9Q6R2W3 1325 aa26.47■■□□□ 1.83
VPS28-213ENST00000530983 ANKRD50Q9ULJ7 1429 aa26.47■■□□□ 1.83
VPS28-213ENST00000530983 PKD2Q13563 968 aa26.47■■□□□ 1.83
VPS28-213ENST00000530983 JPH4Q96JJ6 628 aa26.46■■□□□ 1.83
VPS28-213ENST00000530983 FBLN2P98095 1184 aa26.45■■□□□ 1.82
VPS28-213ENST00000530983 ABCA8O94911 1581 aa26.45■■□□□ 1.82
VPS28-213ENST00000530983 USP47Q96K76 1375 aa26.44■■□□□ 1.82
VPS28-213ENST00000530983 KDM5CP41229 1560 aa26.44■■□□□ 1.82
VPS28-213ENST00000530983 ABCC10Q5T3U5 1492 aa26.44■■□□□ 1.82
VPS28-213ENST00000530983 ERICH6BQ5W0A0 696 aa26.43■■□□□ 1.82
VPS28-213ENST00000530983 DHX29Q7Z478 1369 aaKnown RBP26.43■■□□□ 1.82
VPS28-213ENST00000530983 SHANK2Q9UPX8 1470 aa26.42■■□□□ 1.82
VPS28-213ENST00000530983 C9orf84Q5VXU9 1444 aa26.39■■□□□ 1.81
VPS28-213ENST00000530983 ATP10BO94823 1461 aa26.38■■□□□ 1.81
VPS28-213ENST00000530983 ZNF326Q5BKZ1 582 aaKnown RBP26.38■■□□□ 1.81
VPS28-213ENST00000530983 UHRF1BP1Q6BDS2 1440 aa26.37■■□□□ 1.81
VPS28-213ENST00000530983 PLEKHD1A6NEE1 506 aa26.37■■□□□ 1.81
VPS28-213ENST00000530983 KDM5DQ9BY66 1539 aa26.36■■□□□ 1.81
VPS28-213ENST00000530983 RALGAPBQ86X10 1494 aa26.35■■□□□ 1.81
VPS28-213ENST00000530983 NUP155O75694 1391 aa26.35■■□□□ 1.81
VPS28-213ENST00000530983 PPP4R2Q9NY27 417 aa26.34■■□□□ 1.81
VPS28-213ENST00000530983 ARHGEF12Q9NZN5 1544 aa26.33■■□□□ 1.81
VPS28-213ENST00000530983 ARID4BQ4LE39 1312 aaPredicted RBP26.33■■□□□ 1.81
VPS28-213ENST00000530983 ARHGEF5Q12774 1597 aa26.28■■□□□ 1.8
VPS28-213ENST00000530983 POLR3GLQ9BT43 218 aa26.28■■□□□ 1.8
VPS28-213ENST00000530983 PTPRGP23470 1445 aa26.28■■□□□ 1.8
VPS28-213ENST00000530983 TSPY4P0CV99 314 aa26.26■■□□□ 1.79
VPS28-213ENST00000530983 TSPY10P0CW01 314 aa26.26■■□□□ 1.79
VPS28-213ENST00000530983 KIF15Q9NS87 1388 aa26.25■■□□□ 1.79
VPS28-213ENST00000530983 MSH5O43196 834 aa26.25■■□□□ 1.79
VPS28-213ENST00000530983 ROCK2O75116 1388 aaKnown RBP26.23■■□□□ 1.79
VPS28-213ENST00000530983 SMG6Q86US8 1419 aaKnown RBP26.23■■□□□ 1.79
VPS28-213ENST00000530983 CNGB1Q14028 1251 aaPredicted RBP26.23■■□□□ 1.79
VPS28-213ENST00000530983 CARD11Q9BXL7 1154 aa26.22■■□□□ 1.79
VPS28-213ENST00000530983 HNRNPMP52272 730 aaKnown RBP eCLIP26.22■■□□□ 1.79
VPS28-213ENST00000530983 CDC42BPBQ9Y5S2 1711 aa26.21■■□□□ 1.79
VPS28-213ENST00000530983 FANCIQ9NVI1 1328 aa26.21■■□□□ 1.79
VPS28-213ENST00000530983 SAMD9LQ8IVG5 1584 aa26.2■■□□□ 1.78
VPS28-213ENST00000530983 PREX2Q70Z35 1606 aa26.19■■□□□ 1.78
VPS28-213ENST00000530983 B4GALNT3Q6L9W6 998 aa26.18■■□□□ 1.78
VPS28-213ENST00000530983 CCDC141Q6ZP82 1450 aa26.17■■□□□ 1.78
VPS28-213ENST00000530983 FAM135AQ9P2D6 1515 aa26.16■■□□□ 1.78
VPS28-213ENST00000530983 KDM2AQ9Y2K7 1162 aa26.15■■□□□ 1.78
VPS28-213ENST00000530983 E9PCH4 1651 aa26.15■■□□□ 1.78
VPS28-213ENST00000530983 ST20-MTHFSA0A0A6YYL1 179 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms