RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 L3MBTL2Q969R5 705 aa19.49■□□□□ 0.71
USP48-213ENST00000529637 PBRM1Q86U86 1689 aa19.49■□□□□ 0.71
USP48-213ENST00000529637 SLC4A1APQ9BWU0 796 aaKnown RBP19.47■□□□□ 0.71
USP48-213ENST00000529637 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
USP48-213ENST00000529637 CNGB1Q14028 1251 aaPredicted RBP19.46■□□□□ 0.71
USP48-213ENST00000529637 ADAMTS12P58397 1594 aa19.46■□□□□ 0.71
USP48-213ENST00000529637 MYT1LQ9UL68 1186 aa19.44■□□□□ 0.7
USP48-213ENST00000529637 WASHC2AQ641Q2 1341 aa19.44■□□□□ 0.7
USP48-213ENST00000529637 NOP58Q9Y2X3 529 aaKnown RBP19.44■□□□□ 0.7
USP48-213ENST00000529637 ARHGEF11O15085 1522 aa19.43■□□□□ 0.7
USP48-213ENST00000529637 ANO8Q9HCE9 1232 aaPredicted RBP19.43■□□□□ 0.7
USP48-213ENST00000529637 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
USP48-213ENST00000529637 MIA2Q96PC5 1412 aa19.43■□□□□ 0.7
USP48-213ENST00000529637 POLR3GLQ9BT43 218 aa19.42■□□□□ 0.7
USP48-213ENST00000529637 CFDP1Q9UEE9 299 aaPredicted RBP19.42■□□□□ 0.7
USP48-213ENST00000529637 TCOF1Q13428 1488 aaKnown RBP19.42■□□□□ 0.7
USP48-213ENST00000529637 FAM9BQ8IZU0 186 aa19.42■□□□□ 0.7
USP48-213ENST00000529637 KDM6BO15054 1643 aa19.41■□□□□ 0.7
USP48-213ENST00000529637 WDR62O43379 1518 aa19.41■□□□□ 0.7
USP48-213ENST00000529637 ERICH6BQ5W0A0 696 aa19.41■□□□□ 0.7
USP48-213ENST00000529637 IFT140Q96RY7 1462 aa19.39■□□□□ 0.69
USP48-213ENST00000529637 ERCC6Q03468 1493 aa19.37■□□□□ 0.69
USP48-213ENST00000529637 KIAA0586Q9BVV6 1533 aa19.37■□□□□ 0.69
USP48-213ENST00000529637 DAPK1P53355 1430 aa19.36■□□□□ 0.69
USP48-213ENST00000529637 DENND4BO75064 1496 aaPredicted RBP19.35■□□□□ 0.69
USP48-213ENST00000529637 PRG4Q92954 1404 aaPredicted RBP19.34■□□□□ 0.69
USP48-213ENST00000529637 ABCC5O15440 1437 aa19.34■□□□□ 0.69
USP48-213ENST00000529637 AKNAQ7Z591 1439 aa19.34■□□□□ 0.69
USP48-213ENST00000529637 NBPF8Q3BBV2 869 aa19.33■□□□□ 0.69
USP48-213ENST00000529637 GCC2Q8IWJ2 1684 aa19.33■□□□□ 0.69
USP48-213ENST00000529637 KDM5BQ9UGL1 1544 aa19.33■□□□□ 0.68
USP48-213ENST00000529637 NUP153P49790 1475 aaKnown RBP19.33■□□□□ 0.68
USP48-213ENST00000529637 C11orf95C9JLR9 678 aaPredicted RBP19.32■□□□□ 0.68
USP48-213ENST00000529637 DISP1Q96F81 1524 aa19.32■□□□□ 0.68
USP48-213ENST00000529637 GRIN2AQ12879 1464 aa19.31■□□□□ 0.68
USP48-213ENST00000529637 MRS2Q9HD23 443 aa19.3■□□□□ 0.68
USP48-213ENST00000529637 KIAA0556O60303 1618 aa19.3■□□□□ 0.68
USP48-213ENST00000529637 SALL2Q9Y467 1007 aaPredicted RBP19.29■□□□□ 0.68
USP48-213ENST00000529637 ANKRD30BQ9BXX2 1392 aa19.29■□□□□ 0.68
USP48-213ENST00000529637 PRKRIP1Q9H875 184 aaPredicted RBP19.29■□□□□ 0.68
USP48-213ENST00000529637 JPH4Q96JJ6 628 aa19.28■□□□□ 0.68
USP48-213ENST00000529637 PLB1Q6P1J6 1458 aa19.28■□□□□ 0.68
USP48-213ENST00000529637 SENP3-EIF4A1A0A087X0R7 540 aa19.28■□□□□ 0.68
USP48-213ENST00000529637 ROCK1Q13464 1354 aa19.27■□□□□ 0.68
USP48-213ENST00000529637 ZBED9Q6R2W3 1325 aa19.26■□□□□ 0.67
USP48-213ENST00000529637 PLEKHD1A6NEE1 506 aa19.26■□□□□ 0.67
USP48-213ENST00000529637 CCDC7Q96M83 1385 aa19.25■□□□□ 0.67
USP48-213ENST00000529637 PKD2Q13563 968 aa19.25■□□□□ 0.67
USP48-213ENST00000529637 IL27Q8NEV9 243 aa19.25■□□□□ 0.67
USP48-213ENST00000529637 RAPGEF6Q8TEU7 1601 aa19.25■□□□□ 0.67
USP48-213ENST00000529637 TROQ12816 1431 aaPredicted RBP19.24■□□□□ 0.67
USP48-213ENST00000529637 CNTLNQ9NXG0 1405 aa19.24■□□□□ 0.67
USP48-213ENST00000529637 EIF4G3O43432 1585 aaKnown RBP19.23■□□□□ 0.67
USP48-213ENST00000529637 IPO9Q96P70 1041 aaKnown RBP19.23■□□□□ 0.67
USP48-213ENST00000529637 RPRD2Q5VT52 1461 aaKnown RBP19.22■□□□□ 0.67
USP48-213ENST00000529637 RTN4Q9NQC3 1192 aaKnown RBP19.22■□□□□ 0.67
USP48-213ENST00000529637 CARMIL2Q6F5E8 1435 aa19.22■□□□□ 0.67
USP48-213ENST00000529637 CAMSAP2Q08AD1 1489 aa19.21■□□□□ 0.67
USP48-213ENST00000529637 DNMT1P26358 1616 aaKnown RBP19.2■□□□□ 0.66
USP48-213ENST00000529637 KIF7Q2M1P5 1343 aa19.2■□□□□ 0.66
USP48-213ENST00000529637 KDM2AQ9Y2K7 1162 aa19.19■□□□□ 0.66
USP48-213ENST00000529637 ANP32AP39687 249 aaKnown RBP19.19■□□□□ 0.66
USP48-213ENST00000529637 CCDC136Q96JN2 1154 aa19.19■□□□□ 0.66
USP48-213ENST00000529637 TSPY4P0CV99 314 aa19.18■□□□□ 0.66
USP48-213ENST00000529637 TSPY10P0CW01 314 aa19.18■□□□□ 0.66
USP48-213ENST00000529637 RTL5Q5HYW3 569 aaPredicted RBP19.18■□□□□ 0.66
USP48-213ENST00000529637 ZBTB47Q9UFB7 747 aaPredicted RBP19.18■□□□□ 0.66
USP48-213ENST00000529637 ANKRD30AQ9BXX3 1397 aa19.18■□□□□ 0.66
USP48-213ENST00000529637 NCOA1Q15788 1441 aa19.17■□□□□ 0.66
USP48-213ENST00000529637 GPATCH8Q9UKJ3 1502 aaKnown RBP19.16■□□□□ 0.66
USP48-213ENST00000529637 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
USP48-213ENST00000529637 NUP155O75694 1391 aa19.15■□□□□ 0.66
USP48-213ENST00000529637 TEX14Q8IWB6 1497 aa19.14■□□□□ 0.65
USP48-213ENST00000529637 MAGI1Q96QZ7 1491 aaPredicted RBP19.14■□□□□ 0.65
USP48-213ENST00000529637 HNRNPMP52272 730 aaKnown RBP eCLIP19.14■□□□□ 0.659e-7■■■□□ 18.2
USP48-213ENST00000529637 KIF14Q15058 1648 aa19.12■□□□□ 0.65
USP48-213ENST00000529637 CEP170Q5SW79 1584 aa19.12■□□□□ 0.65
USP48-213ENST00000529637 ANKRD50Q9ULJ7 1429 aa19.12■□□□□ 0.65
USP48-213ENST00000529637 PZPP20742 1482 aa19.12■□□□□ 0.65
USP48-213ENST00000529637 USP47Q96K76 1375 aa19.1■□□□□ 0.65
USP48-213ENST00000529637 KIAA1107Q9UPP5 1409 aa19.1■□□□□ 0.65
USP48-213ENST00000529637 NPM2Q86SE8 214 aaKnown RBP19.1■□□□□ 0.65
USP48-213ENST00000529637 CARD11Q9BXL7 1154 aa19.1■□□□□ 0.65
USP48-213ENST00000529637 LAS1LQ9Y4W2 734 aaKnown RBP19.08■□□□□ 0.64
USP48-213ENST00000529637 SMG6Q86US8 1419 aaKnown RBP19.07■□□□□ 0.64
USP48-213ENST00000529637 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.07■□□□□ 0.64
USP48-213ENST00000529637 DCAF11Q8TEB1 546 aa19.06■□□□□ 0.64
USP48-213ENST00000529637 NUDCQ9Y266 331 aa19.06■□□□□ 0.64
USP48-213ENST00000529637 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.06■□□□□ 0.644e-7■■□□□ 12.9
USP48-213ENST00000529637 ITSN2Q9NZM3 1697 aa19.05■□□□□ 0.64
USP48-213ENST00000529637 RNF123Q5XPI4 1314 aa19.05■□□□□ 0.64
USP48-213ENST00000529637 C9orf84Q5VXU9 1444 aa19.04■□□□□ 0.64
USP48-213ENST00000529637 SPATA31E1Q6ZUB1 1445 aa19.04■□□□□ 0.64
USP48-213ENST00000529637 RGL3Q3MIN7 710 aa19.03■□□□□ 0.64
USP48-213ENST00000529637 ATP10BO94823 1461 aa19.01■□□□□ 0.63
USP48-213ENST00000529637 KIF15Q9NS87 1388 aa19.01■□□□□ 0.63
USP48-213ENST00000529637 TMC1Q8TDI8 760 aa19.01■□□□□ 0.63
USP48-213ENST00000529637 NEFMP07197 916 aa19■□□□□ 0.63
USP48-213ENST00000529637 PTPRGP23470 1445 aa19■□□□□ 0.63
USP48-213ENST00000529637 NUP160Q12769 1436 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms