RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ZMYM4Q5VZL5 1548 aa17.26■□□□□ 0.35
CD44-227ENST00000528086 PREX2Q70Z35 1606 aa17.25■□□□□ 0.35
CD44-227ENST00000528086 SCAPERQ9BY12 1400 aa17.24■□□□□ 0.35
CD44-227ENST00000528086 ARHGEF40Q8TER5 1519 aa17.24■□□□□ 0.35
CD44-227ENST00000528086 POGZQ7Z3K3 1410 aa17.23■□□□□ 0.35
CD44-227ENST00000528086 YEATS2Q9ULM3 1422 aa17.23■□□□□ 0.35
CD44-227ENST00000528086 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
CD44-227ENST00000528086 EFCAB2Q5VUJ9 269 aa17.21■□□□□ 0.35
CD44-227ENST00000528086 ARHGAP5Q13017 1502 aa17.21■□□□□ 0.34
CD44-227ENST00000528086 ADAMTSL3P82987 1691 aa17.2■□□□□ 0.34
CD44-227ENST00000528086 GPATCH8Q9UKJ3 1502 aaKnown RBP17.19■□□□□ 0.34
CD44-227ENST00000528086 KDM5CP41229 1560 aa17.18■□□□□ 0.34
CD44-227ENST00000528086 ABCC1P33527 1531 aa17.17■□□□□ 0.34
CD44-227ENST00000528086 BCORL1Q5H9F3 1711 aa17.17■□□□□ 0.34
CD44-227ENST00000528086 ZFYVE16Q7Z3T8 1539 aa17.16■□□□□ 0.34
CD44-227ENST00000528086 SAMD9LQ8IVG5 1584 aa17.16■□□□□ 0.34
CD44-227ENST00000528086 TRAPPC8Q9Y2L5 1435 aa17.16■□□□□ 0.34
CD44-227ENST00000528086 AFAP1Q8N556 730 aa17.16■□□□□ 0.34
CD44-227ENST00000528086 MAGI2Q86UL8 1455 aa17.15■□□□□ 0.34
CD44-227ENST00000528086 ITSN2Q9NZM3 1697 aa17.15■□□□□ 0.34
CD44-227ENST00000528086 VPS8Q8N3P4 1428 aa17.14■□□□□ 0.33
CD44-227ENST00000528086 TIAM1Q13009 1591 aa17.13■□□□□ 0.33
CD44-227ENST00000528086 ZNF518AQ6AHZ1 1483 aa17.12■□□□□ 0.33
CD44-227ENST00000528086 EHBP1L1Q8N3D4 1523 aa17.11■□□□□ 0.33
CD44-227ENST00000528086 MADDQ8WXG6 1647 aa17.11■□□□□ 0.33
CD44-227ENST00000528086 MTUS2Q5JR59 1369 aa17.11■□□□□ 0.33
CD44-227ENST00000528086 ABCA6Q8N139 1617 aa17.1■□□□□ 0.33
CD44-227ENST00000528086 KIDINS220Q9ULH0 1771 aa17.1■□□□□ 0.33
CD44-227ENST00000528086 DIP2CQ9Y2E4 1556 aa17.09■□□□□ 0.33
CD44-227ENST00000528086 HECW2Q9P2P5 1572 aa17.08■□□□□ 0.32
CD44-227ENST00000528086 SYCP2Q9BX26 1530 aa17.08■□□□□ 0.32
CD44-227ENST00000528086 ATP10AO60312 1499 aa17.08■□□□□ 0.32
CD44-227ENST00000528086 MLH3Q9UHC1 1453 aa17.08■□□□□ 0.32
CD44-227ENST00000528086 PTPRMP28827 1452 aa17.07■□□□□ 0.32
CD44-227ENST00000528086 ZNF644Q9H582 1327 aaPredicted RBP17.07■□□□□ 0.32
CD44-227ENST00000528086 KANK4Q5T7N3 995 aaPredicted RBP17.06■□□□□ 0.32
CD44-227ENST00000528086 NCOA2Q15596 1464 aa17.05■□□□□ 0.32
CD44-227ENST00000528086 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
CD44-227ENST00000528086 HNRNPMP52272 730 aaKnown RBP eCLIP17.05■□□□□ 0.32
CD44-227ENST00000528086 C9orf84Q5VXU9 1444 aa17.04■□□□□ 0.32
CD44-227ENST00000528086 RIMS1Q86UR5 1692 aaKnown RBP17.04■□□□□ 0.32
CD44-227ENST00000528086 ZNF777Q9ULD5 760 aaPredicted RBP17.04■□□□□ 0.32
CD44-227ENST00000528086 LRRC9Q6ZRR7 1453 aa17.04■□□□□ 0.32
CD44-227ENST00000528086 MBD5Q9P267 1494 aa17.04■□□□□ 0.32
CD44-227ENST00000528086 KIAA1107Q9UPP5 1409 aa17.04■□□□□ 0.32
CD44-227ENST00000528086 ARID4BQ4LE39 1312 aaPredicted RBP17.03■□□□□ 0.32
CD44-227ENST00000528086 CFDP1Q9UEE9 299 aaPredicted RBP17.03■□□□□ 0.32
CD44-227ENST00000528086 REREQ9P2R6 1566 aa17.02■□□□□ 0.32
CD44-227ENST00000528086 MAP3K1Q13233 1512 aa17.02■□□□□ 0.32
CD44-227ENST00000528086 SUPT6HQ7KZ85 1726 aaKnown RBP17.02■□□□□ 0.32
CD44-227ENST00000528086 INO80Q9ULG1 1556 aaPredicted RBP16.99■□□□□ 0.31
CD44-227ENST00000528086 FER1L4A9Z1Z3 1794 aa16.99■□□□□ 0.31
CD44-227ENST00000528086 MLECQ14165 292 aa16.98■□□□□ 0.31
CD44-227ENST00000528086 AGLP35573 1532 aa16.96■□□□□ 0.31
CD44-227ENST00000528086 PLEKHH2Q8IVE3 1493 aa16.96■□□□□ 0.31
CD44-227ENST00000528086 ATP7AQ04656 1500 aa16.96■□□□□ 0.3
CD44-227ENST00000528086 CAMSAP2Q08AD1 1489 aa16.94■□□□□ 0.3
CD44-227ENST00000528086 PLXNC1O60486 1568 aa16.94■□□□□ 0.3
CD44-227ENST00000528086 SPAG9O60271 1321 aaKnown RBP16.93■□□□□ 0.3
CD44-227ENST00000528086 LMTK3Q96Q04 1460 aa16.91■□□□□ 0.3
CD44-227ENST00000528086 ADGBQ8N7X0 1667 aa16.89■□□□□ 0.29
CD44-227ENST00000528086 CEBPAP49715 358 aaPredicted RBP16.89■□□□□ 0.29
CD44-227ENST00000528086 MYT1LQ9UL68 1186 aa16.89■□□□□ 0.29
CD44-227ENST00000528086 ARHGEF5Q12774 1597 aa16.88■□□□□ 0.29
CD44-227ENST00000528086 MYOM3Q5VTT5 1437 aa16.87■□□□□ 0.29
CD44-227ENST00000528086 A2MP01023 1474 aa16.87■□□□□ 0.29
CD44-227ENST00000528086 RTEL1-TNFRSF6BF6WH68 1400 aa16.87■□□□□ 0.29
CD44-227ENST00000528086 CCDC141Q6ZP82 1450 aa16.86■□□□□ 0.29
CD44-227ENST00000528086 C3P01024 1663 aa16.86■□□□□ 0.29
CD44-227ENST00000528086 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
CD44-227ENST00000528086 MIA2Q96PC5 1412 aa16.83■□□□□ 0.28
CD44-227ENST00000528086 MAST1Q9Y2H9 1570 aa16.81■□□□□ 0.28
CD44-227ENST00000528086 DHX29Q7Z478 1369 aaKnown RBP16.8■□□□□ 0.28
CD44-227ENST00000528086 HSPA2P54652 639 aa16.8■□□□□ 0.28
CD44-227ENST00000528086 SETD1BQ9UPS6 1966 aaKnown RBP16.79■□□□□ 0.28
CD44-227ENST00000528086 PTPN23Q9H3S7 1636 aa16.79■□□□□ 0.28
CD44-227ENST00000528086 MROH2AA6NES4 1674 aa16.78■□□□□ 0.28
CD44-227ENST00000528086 CLTCQ00610 1675 aaKnown RBP16.78■□□□□ 0.28
CD44-227ENST00000528086 RSPH4AQ5TD94 716 aa16.78■□□□□ 0.28
CD44-227ENST00000528086 PREX1Q8TCU6 1659 aa16.78■□□□□ 0.28
CD44-227ENST00000528086 TCOF1Q13428 1488 aaKnown RBP16.77■□□□□ 0.28
CD44-227ENST00000528086 ABCC5O15440 1437 aa16.77■□□□□ 0.27
CD44-227ENST00000528086 FGD6Q6ZV73 1430 aa16.77■□□□□ 0.27
CD44-227ENST00000528086 CROCC2H7BZ55 1655 aa16.75■□□□□ 0.27
CD44-227ENST00000528086 ZMYM3Q14202 1370 aa16.75■□□□□ 0.27
CD44-227ENST00000528086 CNTLNQ9NXG0 1405 aa16.74■□□□□ 0.27
CD44-227ENST00000528086 APLP2Q06481 763 aa16.73■□□□□ 0.27
CD44-227ENST00000528086 GGT6Q6P531 493 aa16.73■□□□□ 0.27
CD44-227ENST00000528086 DNMT1P26358 1616 aaKnown RBP16.73■□□□□ 0.27
CD44-227ENST00000528086 STRCQ7RTU9 1775 aa16.72■□□□□ 0.27
CD44-227ENST00000528086 PTPRKQ15262 1439 aa16.71■□□□□ 0.27
CD44-227ENST00000528086 MROH1Q8NDA8 1641 aa16.71■□□□□ 0.27
CD44-227ENST00000528086 KIF3BO15066 747 aa16.71■□□□□ 0.27
CD44-227ENST00000528086 DAPK1P53355 1430 aa16.7■□□□□ 0.26
CD44-227ENST00000528086 TSPY4P0CV99 314 aa16.7■□□□□ 0.26
CD44-227ENST00000528086 TSPY10P0CW01 314 aa16.7■□□□□ 0.26
CD44-227ENST00000528086 RNF17Q9BXT8 1623 aaKnown RBP16.7■□□□□ 0.26
CD44-227ENST00000528086 SHANK2Q9UPX8 1470 aa16.69■□□□□ 0.26
CD44-227ENST00000528086 NPATQ14207 1427 aa16.68■□□□□ 0.26
CD44-227ENST00000528086 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms