RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 ARID4BQ4LE39 1312 aaPredicted RBP24.85■■□□□ 1.57
CAPN1-213ENST00000527897 CDC42BPBQ9Y5S2 1711 aa24.83■■□□□ 1.57
CAPN1-213ENST00000527897 ARHGEF40Q8TER5 1519 aa24.81■■□□□ 1.56
CAPN1-213ENST00000527897 POGZQ7Z3K3 1410 aa24.81■■□□□ 1.56
CAPN1-213ENST00000527897 PREX2Q70Z35 1606 aa24.8■■□□□ 1.56
CAPN1-213ENST00000527897 MTUS2Q5JR59 1369 aa24.8■■□□□ 1.56
CAPN1-213ENST00000527897 ZMYM4Q5VZL5 1548 aa24.79■■□□□ 1.56
CAPN1-213ENST00000527897 CDC42BPAQ5VT25 1732 aa24.78■■□□□ 1.56
CAPN1-213ENST00000527897 ZFYVE16Q7Z3T8 1539 aa24.78■■□□□ 1.56
CAPN1-213ENST00000527897 MYT1LQ9UL68 1186 aa24.77■■□□□ 1.56
CAPN1-213ENST00000527897 YEATS2Q9ULM3 1422 aa24.77■■□□□ 1.56
CAPN1-213ENST00000527897 ZNF777Q9ULD5 760 aaPredicted RBP24.75■■□□□ 1.55
CAPN1-213ENST00000527897 AFAP1Q8N556 730 aa24.73■■□□□ 1.55
CAPN1-213ENST00000527897 ZNF518AQ6AHZ1 1483 aa24.72■■□□□ 1.55
CAPN1-213ENST00000527897 MAGI2Q86UL8 1455 aa24.72■■□□□ 1.55
CAPN1-213ENST00000527897 BCORL1Q5H9F3 1711 aa24.71■■□□□ 1.55
CAPN1-213ENST00000527897 CCNB3Q8WWL7 1395 aa24.69■■□□□ 1.54
CAPN1-213ENST00000527897 ABCC1P33527 1531 aa24.69■■□□□ 1.54
CAPN1-213ENST00000527897 EHBP1L1Q8N3D4 1523 aa24.69■■□□□ 1.54
CAPN1-213ENST00000527897 ADAMTSL3P82987 1691 aa24.69■■□□□ 1.54
CAPN1-213ENST00000527897 GPATCH8Q9UKJ3 1502 aaKnown RBP24.68■■□□□ 1.54
CAPN1-213ENST00000527897 VPS8Q8N3P4 1428 aa24.68■■□□□ 1.54
CAPN1-213ENST00000527897 ITSN2Q9NZM3 1697 aa24.67■■□□□ 1.54
CAPN1-213ENST00000527897 MLECQ14165 292 aa24.66■■□□□ 1.54
CAPN1-213ENST00000527897 CFDP1Q9UEE9 299 aaPredicted RBP24.66■■□□□ 1.54
CAPN1-213ENST00000527897 ARHGEF12Q9NZN5 1544 aa24.66■■□□□ 1.54
CAPN1-213ENST00000527897 MADDQ8WXG6 1647 aa24.65■■□□□ 1.54
CAPN1-213ENST00000527897 SIGLEC1Q9BZZ2 1709 aa24.65■■□□□ 1.54
CAPN1-213ENST00000527897 TRAPPC8Q9Y2L5 1435 aa24.65■■□□□ 1.54
CAPN1-213ENST00000527897 KDM5CP41229 1560 aa24.64■■□□□ 1.54
CAPN1-213ENST00000527897 ATP10AO60312 1499 aa24.64■■□□□ 1.53
CAPN1-213ENST00000527897 SAMD9LQ8IVG5 1584 aa24.63■■□□□ 1.53
CAPN1-213ENST00000527897 HECW2Q9P2P5 1572 aa24.63■■□□□ 1.53
CAPN1-213ENST00000527897 C9orf84Q5VXU9 1444 aa24.61■■□□□ 1.53
CAPN1-213ENST00000527897 TIAM1Q13009 1591 aa24.61■■□□□ 1.53
CAPN1-213ENST00000527897 SYCP2Q9BX26 1530 aa24.61■■□□□ 1.53
CAPN1-213ENST00000527897 PTPRMP28827 1452 aa24.6■■□□□ 1.53
CAPN1-213ENST00000527897 HNRNPMP52272 730 aaKnown RBP eCLIP24.6■■□□□ 1.53
CAPN1-213ENST00000527897 RIMS1Q86UR5 1692 aaKnown RBP24.59■■□□□ 1.53
CAPN1-213ENST00000527897 PLPPR3Q6T4P5 718 aa24.59■■□□□ 1.53
CAPN1-213ENST00000527897 SUPT6HQ7KZ85 1726 aaKnown RBP24.58■■□□□ 1.52
CAPN1-213ENST00000527897 DIP2CQ9Y2E4 1556 aa24.57■■□□□ 1.52
CAPN1-213ENST00000527897 ABCA6Q8N139 1617 aa24.57■■□□□ 1.52
CAPN1-213ENST00000527897 MLH3Q9UHC1 1453 aa24.56■■□□□ 1.52
CAPN1-213ENST00000527897 NCOA2Q15596 1464 aa24.54■■□□□ 1.52
CAPN1-213ENST00000527897 PLEKHH2Q8IVE3 1493 aa24.53■■□□□ 1.52
CAPN1-213ENST00000527897 ZNF644Q9H582 1327 aaPredicted RBP24.53■■□□□ 1.52
CAPN1-213ENST00000527897 FER1L4A9Z1Z3 1794 aa24.52■■□□□ 1.52
CAPN1-213ENST00000527897 KIDINS220Q9ULH0 1771 aa24.52■■□□□ 1.52
CAPN1-213ENST00000527897 SPAG9O60271 1321 aaKnown RBP24.51■■□□□ 1.51
CAPN1-213ENST00000527897 LRRC9Q6ZRR7 1453 aa24.51■■□□□ 1.51
CAPN1-213ENST00000527897 KIAA1107Q9UPP5 1409 aa24.5■■□□□ 1.51
CAPN1-213ENST00000527897 APLP2Q06481 763 aa24.47■■□□□ 1.51
CAPN1-213ENST00000527897 KANK4Q5T7N3 995 aaPredicted RBP24.47■■□□□ 1.51
CAPN1-213ENST00000527897 REREQ9P2R6 1566 aa24.45■■□□□ 1.5
CAPN1-213ENST00000527897 ATP7AQ04656 1500 aa24.44■■□□□ 1.5
CAPN1-213ENST00000527897 MAP3K1Q13233 1512 aa24.43■■□□□ 1.5
CAPN1-213ENST00000527897 CAMSAP2Q08AD1 1489 aa24.41■■□□□ 1.5
CAPN1-213ENST00000527897 INO80Q9ULG1 1556 aaPredicted RBP24.41■■□□□ 1.5
CAPN1-213ENST00000527897 MBD5Q9P267 1494 aa24.38■■□□□ 1.49
CAPN1-213ENST00000527897 ESF1Q9H501 851 aaKnown RBP24.38■■□□□ 1.49
CAPN1-213ENST00000527897 AGLP35573 1532 aa24.38■■□□□ 1.49
CAPN1-213ENST00000527897 CEBPAP49715 358 aaPredicted RBP24.36■■□□□ 1.49
CAPN1-213ENST00000527897 A2MP01023 1474 aa24.34■■□□□ 1.49
CAPN1-213ENST00000527897 CCDC141Q6ZP82 1450 aa24.34■■□□□ 1.49
CAPN1-213ENST00000527897 ADGBQ8N7X0 1667 aa24.31■■□□□ 1.48
CAPN1-213ENST00000527897 LMTK3Q96Q04 1460 aa24.31■■□□□ 1.48
CAPN1-213ENST00000527897 MYOM3Q5VTT5 1437 aa24.3■■□□□ 1.48
CAPN1-213ENST00000527897 RSPH4AQ5TD94 716 aa24.28■■□□□ 1.48
CAPN1-213ENST00000527897 PLXNC1O60486 1568 aa24.28■■□□□ 1.48
CAPN1-213ENST00000527897 RTEL1-TNFRSF6BF6WH68 1400 aa24.27■■□□□ 1.48
CAPN1-213ENST00000527897 TSPY4P0CV99 314 aa24.27■■□□□ 1.48
CAPN1-213ENST00000527897 TSPY10P0CW01 314 aa24.27■■□□□ 1.48
CAPN1-213ENST00000527897 GGT6Q6P531 493 aa24.27■■□□□ 1.48
CAPN1-213ENST00000527897 ARHGEF5Q12774 1597 aa24.26■■□□□ 1.47
CAPN1-213ENST00000527897 HSPA2P54652 639 aa24.26■■□□□ 1.47
CAPN1-213ENST00000527897 C3P01024 1663 aa24.26■■□□□ 1.47
CAPN1-213ENST00000527897 MIA2Q96PC5 1412 aa24.24■■□□□ 1.47
CAPN1-213ENST00000527897 CNTLNQ9NXG0 1405 aa24.22■■□□□ 1.47
CAPN1-213ENST00000527897 PREX1Q8TCU6 1659 aa24.21■■□□□ 1.47
CAPN1-213ENST00000527897 CLTCQ00610 1675 aaKnown RBP24.21■■□□□ 1.47
CAPN1-213ENST00000527897 DHX29Q7Z478 1369 aaKnown RBP24.2■■□□□ 1.46
CAPN1-213ENST00000527897 PTPN23Q9H3S7 1636 aa24.18■■□□□ 1.46
CAPN1-213ENST00000527897 KIF3BO15066 747 aa24.18■■□□□ 1.46
CAPN1-213ENST00000527897 MROH2AA6NES4 1674 aa24.16■■□□□ 1.46
CAPN1-213ENST00000527897 UHRF1BP1Q6BDS2 1440 aa24.16■■□□□ 1.46
CAPN1-213ENST00000527897 SETD1BQ9UPS6 1966 aaKnown RBP24.16■■□□□ 1.46
CAPN1-213ENST00000527897 ZMYM3Q14202 1370 aa24.15■■□□□ 1.46
CAPN1-213ENST00000527897 MAST1Q9Y2H9 1570 aa24.13■■□□□ 1.45
CAPN1-213ENST00000527897 FGD6Q6ZV73 1430 aa24.13■■□□□ 1.45
CAPN1-213ENST00000527897 PPP6R1Q9UPN7 881 aa24.08■■□□□ 1.45
CAPN1-213ENST00000527897 CROCC2H7BZ55 1655 aa24.08■■□□□ 1.44
CAPN1-213ENST00000527897 ABCC5O15440 1437 aa24.07■■□□□ 1.44
CAPN1-213ENST00000527897 FAM50AQ14320 339 aaKnown RBP24.06■■□□□ 1.44
CAPN1-213ENST00000527897 TCOF1Q13428 1488 aaKnown RBP24.06■■□□□ 1.44
CAPN1-213ENST00000527897 DAPK1P53355 1430 aa24.05■■□□□ 1.44
CAPN1-213ENST00000527897 NPATQ14207 1427 aa24.05■■□□□ 1.44
CAPN1-213ENST00000527897 PPARGC1BQ86YN6 1023 aaKnown RBP24.05■■□□□ 1.44
CAPN1-213ENST00000527897 WASHC2CQ9Y4E1 1318 aa24.05■■□□□ 1.44
CAPN1-213ENST00000527897 DNMT1P26358 1616 aaKnown RBP24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms