RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 ZNF467Q7Z7K2 595 aaPredicted RBP14.41□□□□□ -0.1
NEDD8-203ENST00000524927 SPOCK2Q92563 424 aa14.4□□□□□ -0.1
NEDD8-203ENST00000524927 PSEN1P49768 467 aa14.39□□□□□ -0.11
NEDD8-203ENST00000524927 PEG3Q9GZU2 1588 aa14.36□□□□□ -0.11
NEDD8-203ENST00000524927 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.34□□□□□ -0.11
NEDD8-203ENST00000524927 MKRN3Q13064 507 aaKnown RBP14.32□□□□□ -0.12
NEDD8-203ENST00000524927 PKD2Q13563 968 aa14.32□□□□□ -0.12
NEDD8-203ENST00000524927 DPY19L2Q6NUT2 758 aa14.32□□□□□ -0.12
NEDD8-203ENST00000524927 CIZ1Q9ULV3 898 aaPredicted RBP14.31□□□□□ -0.12
NEDD8-203ENST00000524927 FANCD2Q9BXW9 1451 aa14.31□□□□□ -0.12
NEDD8-203ENST00000524927 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.3□□□□□ -0.122e-14■□□□□ 10.3
NEDD8-203ENST00000524927 KDM4FA0A1W2PPD8 638 aa14.28□□□□□ -0.12
NEDD8-203ENST00000524927 MARVELD3Q96A59 401 aa14.28□□□□□ -0.12
NEDD8-203ENST00000524927 FBXO41Q8TF61 875 aa14.27□□□□□ -0.13
NEDD8-203ENST00000524927 GOLGA2Q08379 1002 aa14.26□□□□□ -0.13
NEDD8-203ENST00000524927 URB2Q14146 1524 aaKnown RBP14.25□□□□□ -0.13
NEDD8-203ENST00000524927 ZNF608Q9ULD9 1512 aaPredicted RBP14.25□□□□□ -0.13
NEDD8-203ENST00000524927 PDAP1Q13442 181 aaKnown RBP14.25□□□□□ -0.13
NEDD8-203ENST00000524927 LMTK3Q96Q04 1460 aa14.24□□□□□ -0.13
NEDD8-203ENST00000524927 CABP2Q9NPB3 220 aa14.23□□□□□ -0.13
NEDD8-203ENST00000524927 ECM2O94769 699 aaPredicted RBP14.22□□□□□ -0.13
NEDD8-203ENST00000524927 IFT140Q96RY7 1462 aa14.22□□□□□ -0.13
NEDD8-203ENST00000524927 ERCC6L2Q5T890 1561 aa14.22□□□□□ -0.13
NEDD8-203ENST00000524927 SOCS7O14512 581 aa14.21□□□□□ -0.13
NEDD8-203ENST00000524927 L3MBTL3Q96JM7 780 aaPredicted RBP14.21□□□□□ -0.13
NEDD8-203ENST00000524927 CHD1O14646 1710 aa14.2□□□□□ -0.14
NEDD8-203ENST00000524927 C3orf67Q6ZVT6 689 aa14.19□□□□□ -0.14
NEDD8-203ENST00000524927 TMEM121BQ9BXQ6 578 aaPredicted RBP14.19□□□□□ -0.14
NEDD8-203ENST00000524927 POTEB3A0JP26 581 aa14.17□□□□□ -0.14
NEDD8-203ENST00000524927 SNPHO15079 494 aa14.17□□□□□ -0.14
NEDD8-203ENST00000524927 POTEBQ6S5H4 581 aa14.17□□□□□ -0.14
NEDD8-203ENST00000524927 EIF4G3O43432 1585 aaKnown RBP14.11□□□□□ -0.15
NEDD8-203ENST00000524927 SPNS2Q8IVW8 549 aa14.1□□□□□ -0.15
NEDD8-203ENST00000524927 CFTRP13569 1480 aa14.08□□□□□ -0.16
NEDD8-203ENST00000524927 PLCB2Q00722 1185 aa14.08□□□□□ -0.16
NEDD8-203ENST00000524927 EFCAB3Q8N7B9 438 aa14.08□□□□□ -0.16
NEDD8-203ENST00000524927 BOLA1Q9Y3E2 137 aa14.08□□□□□ -0.16
NEDD8-203ENST00000524927 CLASP1Q7Z460 1538 aa14.08□□□□□ -0.16
NEDD8-203ENST00000524927 HOXB3P14651 431 aaPredicted RBP14.06□□□□□ -0.16
NEDD8-203ENST00000524927 MMRN1Q13201 1228 aa14.06□□□□□ -0.16
NEDD8-203ENST00000524927 HECW2Q9P2P5 1572 aa14.05□□□□□ -0.16
NEDD8-203ENST00000524927 RNF25Q96BH1 459 aaPredicted RBP14.05□□□□□ -0.16
NEDD8-203ENST00000524927 EMP3P54852 163 aa14.04□□□□□ -0.16
NEDD8-203ENST00000524927 GAPVD1Q14C86 1478 aa14.03□□□□□ -0.16
NEDD8-203ENST00000524927 FAM205CA6NFA0 338 aa14.02□□□□□ -0.17
NEDD8-203ENST00000524927 HS3ST6Q96QI5 342 aa14.02□□□□□ -0.17
NEDD8-203ENST00000524927 RGL2O15211 777 aa14.01□□□□□ -0.17
NEDD8-203ENST00000524927 ILDR2Q71H61 639 aa14.01□□□□□ -0.17
NEDD8-203ENST00000524927 KRTAP3-3Q9BYR6 98 aa14.01□□□□□ -0.17
NEDD8-203ENST00000524927 KRTAP3-2Q9BYR7 98 aa14.01□□□□□ -0.17
NEDD8-203ENST00000524927 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.178e-8■■□□□ 11.9
NEDD8-203ENST00000524927 KIF13AQ9H1H9 1805 aa13.97□□□□□ -0.17
NEDD8-203ENST00000524927 MROH2BQ7Z745 1585 aa13.97□□□□□ -0.17
NEDD8-203ENST00000524927 TMEM92Q6UXU6 159 aa13.97□□□□□ -0.17
NEDD8-203ENST00000524927 SYNJ1O43426 1573 aa13.96□□□□□ -0.17
NEDD8-203ENST00000524927 HAP1P54257 671 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-203ENST00000524927 MS4A4AQ96JQ5 239 aa13.95□□□□□ -0.18
NEDD8-203ENST00000524927 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.95□□□□□ -0.18
NEDD8-203ENST00000524927 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.93□□□□□ -0.18
NEDD8-203ENST00000524927 ZFP91Q96JP5 570 aaPredicted RBP13.93□□□□□ -0.18
NEDD8-203ENST00000524927 G3V3G9 751 aa13.92□□□□□ -0.18
NEDD8-203ENST00000524927 BBXQ8WY36 941 aaPredicted RBP13.92□□□□□ -0.18
NEDD8-203ENST00000524927 SYNJ2O15056 1496 aa13.91□□□□□ -0.18
NEDD8-203ENST00000524927 RIOK3O14730 519 aaKnown RBP13.9□□□□□ -0.18
NEDD8-203ENST00000524927 TOPBP1Q92547 1522 aa13.9□□□□□ -0.19
NEDD8-203ENST00000524927 MICALL2Q8IY33 904 aa13.89□□□□□ -0.19
NEDD8-203ENST00000524927 PHF8Q9UPP1 1060 aa13.89□□□□□ -0.19
NEDD8-203ENST00000524927 ADGRL1O94910 1474 aa13.88□□□□□ -0.19
NEDD8-203ENST00000524927 DISP3Q9P2K9 1392 aa13.88□□□□□ -0.19
NEDD8-203ENST00000524927 KDM6BO15054 1643 aa13.88□□□□□ -0.19
NEDD8-203ENST00000524927 HOXB1P14653 301 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-203ENST00000524927 CHMP7Q8WUX9 453 aaPredicted RBP13.86□□□□□ -0.19
NEDD8-203ENST00000524927 ABCC8Q09428 1581 aa13.86□□□□□ -0.19
NEDD8-203ENST00000524927 TARBP1Q13395 1621 aaKnown RBP13.86□□□□□ -0.19
NEDD8-203ENST00000524927 CHGAP10645 457 aaKnown RBP13.84□□□□□ -0.19
NEDD8-203ENST00000524927 SOX12O15370 315 aa13.82□□□□□ -0.2
NEDD8-203ENST00000524927 FAM69CQ0P6D2 419 aa13.82□□□□□ -0.2
NEDD8-203ENST00000524927 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
NEDD8-203ENST00000524927 CFAP44Q96MT7 982 aa13.82□□□□□ -0.2
NEDD8-203ENST00000524927 VGFO15240 615 aaPredicted RBP13.81□□□□□ -0.2
NEDD8-203ENST00000524927 ZNF710Q8N1W2 664 aa13.81□□□□□ -0.2
NEDD8-203ENST00000524927 SNAPC4Q5SXM2 1469 aa13.8□□□□□ -0.2
NEDD8-203ENST00000524927 ABCC10Q5T3U5 1492 aa13.8□□□□□ -0.2
NEDD8-203ENST00000524927 DOK7Q18PE1 504 aa13.79□□□□□ -0.2
NEDD8-203ENST00000524927 MAGI1Q96QZ7 1491 aaPredicted RBP13.77□□□□□ -0.21
NEDD8-203ENST00000524927 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
NEDD8-203ENST00000524927 ERBB3P21860 1342 aa13.76□□□□□ -0.21
NEDD8-203ENST00000524927 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
NEDD8-203ENST00000524927 GPR153Q6NV75 609 aa13.74□□□□□ -0.21
NEDD8-203ENST00000524927 SPRYD3Q8NCJ5 442 aa13.74□□□□□ -0.21
NEDD8-203ENST00000524927 FBXO22Q8NEZ5 403 aa13.74□□□□□ -0.21
NEDD8-203ENST00000524927 TAOK2Q9UL54 1235 aa13.74□□□□□ -0.21
NEDD8-203ENST00000524927 VARS2Q5ST30 1063 aaKnown RBP13.72□□□□□ -0.21
NEDD8-203ENST00000524927 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-203ENST00000524927 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.21
NEDD8-203ENST00000524927 WIZO95785 1651 aa13.71□□□□□ -0.21
NEDD8-203ENST00000524927 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
NEDD8-203ENST00000524927 HS6ST3Q8IZP7 471 aa13.69□□□□□ -0.22
NEDD8-203ENST00000524927 VSIG10Q8N0Z9 540 aa13.69□□□□□ -0.22
NEDD8-203ENST00000524927 DIP2BQ9P265 1576 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms