RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.5□□□□□ -1.212e-6■■■■■ 42.9
NEDD8-203ENST00000524927 SF3B4Q15427 424 aaKnown RBP eCLIP6.2□□□□□ -1.423e-15■■■■□ 24.1
NEDD8-203ENST00000524927 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.9□□□□□ -1.32e-8■■■■□ 21.7
NEDD8-203ENST00000524927 EIF3GO75821 320 aaKnown RBP eCLIP3.9□□□□□ -1.791e-7■■■■□ 19.4
NEDD8-203ENST00000524927 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.69□□□□□ -1.663e-6■■■□□ 18.4
NEDD8-203ENST00000524927 EFTUD2Q15029 972 aaKnown RBP eCLIP5.77□□□□□ -1.491e-8■■■□□ 18.3
NEDD8-203ENST00000524927 SF3A3Q12874 501 aaKnown RBP eCLIP6.62□□□□□ -1.354e-7■■■□□ 16.8
NEDD8-203ENST00000524927 RPS3P23396 243 aaKnown RBP eCLIP5.68□□□□□ -1.52e-15■■■□□ 16.4
NEDD8-203ENST00000524927 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.41■□□□□ 0.71e-7■■■□□ 15.4
NEDD8-203ENST00000524927 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.74□□□□□ -1.171e-6■■■□□ 15.3
NEDD8-203ENST00000524927 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.07□□□□□ -0.962e-13■■□□□ 13.4
NEDD8-203ENST00000524927 FTOQ9C0B1 505 aaKnown RBP eCLIP8.5□□□□□ -1.057e-7■■□□□ 13.4
NEDD8-203ENST00000524927 KHSRPQ92945 711 aaKnown RBP eCLIP13.68□□□□□ -0.224e-7■■□□□ 13.3
NEDD8-203ENST00000524927 ILF3Q12906 894 aaKnown RBP eCLIP6.68□□□□□ -1.343e-7■■□□□ 13.3
NEDD8-203ENST00000524927 LARP4Q71RC2 724 aaKnown RBP eCLIP7.41□□□□□ -1.226e-13■■□□□ 12.8
NEDD8-203ENST00000524927 DDX3XO00571 662 aaKnown RBP eCLIP7.47□□□□□ -1.212e-10■■□□□ 12.1
NEDD8-203ENST00000524927 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.178e-8■■□□□ 11.9
NEDD8-203ENST00000524927 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.6□□□□□ -1.513e-9■■□□□ 11.5
NEDD8-203ENST00000524927 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.3□□□□□ -0.122e-14■□□□□ 10.3
NEDD8-203ENST00000524927 ZNF622Q969S3 477 aaKnown RBP eCLIP9.86□□□□□ -0.831e-16■□□□□ 9.9
NEDD8-203ENST00000524927 PABPC4Q13310 644 aaKnown RBP eCLIP8.8□□□□□ -11e-8■□□□□ 9.8
NEDD8-203ENST00000524927 PTBP1P26599 531 aaKnown RBP eCLIP4.48□□□□□ -1.697e-6■□□□□ 9.8
NEDD8-203ENST00000524927 HNRNPKP61978 463 aaKnown RBP eCLIP7.06□□□□□ -1.285e-7■□□□□ 9.7
NEDD8-203ENST00000524927 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.4□□□□□ -0.741e-17■□□□□ 9.3
NEDD8-203ENST00000524927 HNRNPCP07910 306 aaKnown RBP eCLIP6.48□□□□□ -1.372e-6■□□□□ 8.9
NEDD8-203ENST00000524927 PRPF4O43172 522 aaKnown RBP eCLIP6.19□□□□□ -1.421e-7■□□□□ 8.7
NEDD8-203ENST00000524927 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.01□□□□□ -0.975e-9■□□□□ 8.6
NEDD8-203ENST00000524927 RBM15Q96T37 977 aaKnown RBP eCLIP6.99□□□□□ -1.298e-6■□□□□ 8.4
NEDD8-203ENST00000524927 PCBP2Q15366 365 aaKnown RBP eCLIP7.71□□□□□ -1.189e-10■□□□□ 8.1
Retrieved 29 of 29 RNA–protein pairs in 25.7 ms