RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 ZNF579Q8NAF0 562 aaKnown RBP15.79■□□□□ 0.12
NEDD8-203ENST00000524927 MNX1P50219 401 aaPredicted RBP15.78■□□□□ 0.12
NEDD8-203ENST00000524927 FKBP8Q14318 412 aa15.75■□□□□ 0.11
NEDD8-203ENST00000524927 GALR2O43603 387 aaPredicted RBP15.73■□□□□ 0.11
NEDD8-203ENST00000524927 MYO15BQ96JP2 1530 aa15.69■□□□□ 0.1
NEDD8-203ENST00000524927 PHF12Q96QT6 1004 aa15.68■□□□□ 0.1
NEDD8-203ENST00000524927 DCBLD2Q96PD2 775 aa15.66■□□□□ 0.1
NEDD8-203ENST00000524927 PROM2Q8N271 834 aa15.65■□□□□ 0.1
NEDD8-203ENST00000524927 ERCC6Q03468 1493 aa15.62■□□□□ 0.09
NEDD8-203ENST00000524927 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
NEDD8-203ENST00000524927 POTEB2H3BUK9 544 aa15.51■□□□□ 0.07
NEDD8-203ENST00000524927 PELP1Q8IZL8 1130 aaKnown RBP15.51■□□□□ 0.07
NEDD8-203ENST00000524927 PAK3O75914 559 aaPredicted RBP15.49■□□□□ 0.07
NEDD8-203ENST00000524927 MS4A3Q96HJ5 214 aa15.44■□□□□ 0.06
NEDD8-203ENST00000524927 TSPYL2Q9H2G4 693 aaPredicted RBP15.42■□□□□ 0.06
NEDD8-203ENST00000524927 OTUD5Q96G74 571 aa15.39■□□□□ 0.05
NEDD8-203ENST00000524927 CCDC61Q9Y6R9 512 aa15.35■□□□□ 0.05
NEDD8-203ENST00000524927 ATMINO43313 823 aaPredicted RBP15.31■□□□□ 0.04
NEDD8-203ENST00000524927 ASTLQ6HA08 431 aaPredicted RBP15.3■□□□□ 0.04
NEDD8-203ENST00000524927 MIER1Q8N108 512 aa15.29■□□□□ 0.04
NEDD8-203ENST00000524927 RASEFQ8IZ41 740 aa15.28■□□□□ 0.04
NEDD8-203ENST00000524927 TRPC6Q9Y210 931 aa15.28■□□□□ 0.04
NEDD8-203ENST00000524927 SCRIBQ14160 1630 aa15.28■□□□□ 0.04
NEDD8-203ENST00000524927 POTEJP0CG39 1038 aa15.27■□□□□ 0.04
NEDD8-203ENST00000524927 KIF12Q96FN5 646 aa15.27■□□□□ 0.04
NEDD8-203ENST00000524927 AMER1Q5JTC6 1135 aaPredicted RBP15.25■□□□□ 0.03
NEDD8-203ENST00000524927 METRNQ9UJH8 293 aa15.22■□□□□ 0.03
NEDD8-203ENST00000524927 ATN1P54259 1190 aaPredicted RBP15.21■□□□□ 0.03
NEDD8-203ENST00000524927 RTN4Q9NQC3 1192 aaKnown RBP15.21■□□□□ 0.03
NEDD8-203ENST00000524927 MAP3K13O43283 966 aa15.19■□□□□ 0.02
NEDD8-203ENST00000524927 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
NEDD8-203ENST00000524927 BMP2KQ9NSY1 1161 aaPredicted RBP15.15■□□□□ 0.02
NEDD8-203ENST00000524927 POTEFA5A3E0 1075 aa15.14■□□□□ 0.01
NEDD8-203ENST00000524927 C7P10643 843 aa15.13■□□□□ 0.01
NEDD8-203ENST00000524927 SLC39A7Q92504 469 aa15.13■□□□□ 0.01
NEDD8-203ENST00000524927 PLSCR2Q9NRY7 297 aa15.12■□□□□ 0.01
NEDD8-203ENST00000524927 PLCD3Q8N3E9 789 aa15.1■□□□□ 0.01
NEDD8-203ENST00000524927 NUBP1P53384 320 aa15.09■□□□□ 0.01
NEDD8-203ENST00000524927 NESP48681 1621 aa15.07■□□□□ 0
NEDD8-203ENST00000524927 PLEKHG5O94827 1062 aa15.07■□□□□ 0
NEDD8-203ENST00000524927 ILDR1Q86SU0 546 aaPredicted RBP15.05■□□□□ -0
NEDD8-203ENST00000524927 FBXO3Q9UK99 471 aa15.05■□□□□ -0
NEDD8-203ENST00000524927 NCAPD3P42695 1498 aa15.03■□□□□ -0
NEDD8-203ENST00000524927 BAZ1AQ9NRL2 1556 aaPredicted RBP15.02■□□□□ -0
NEDD8-203ENST00000524927 DCAF1Q9Y4B6 1507 aa15.02■□□□□ -0
NEDD8-203ENST00000524927 TTLL13PA6NNM8 815 aa15□□□□□ -0.01
NEDD8-203ENST00000524927 TIE1P35590 1138 aa15□□□□□ -0.01
NEDD8-203ENST00000524927 COLQQ9Y215 455 aaPredicted RBP14.99□□□□□ -0.01
NEDD8-203ENST00000524927 RIMBP3CA6NJZ7 1639 aa14.99□□□□□ -0.01
NEDD8-203ENST00000524927 RIMBP3BA6NNM3 1639 aa14.99□□□□□ -0.01
NEDD8-203ENST00000524927 RIMBP3Q9UFD9 1639 aa14.99□□□□□ -0.01
NEDD8-203ENST00000524927 POTEMA6NI47 508 aa14.97□□□□□ -0.01
NEDD8-203ENST00000524927 LCE2DQ5TA82 110 aaPredicted RBP14.94□□□□□ -0.02
NEDD8-203ENST00000524927 PCDHB13Q9Y5F0 798 aa14.94□□□□□ -0.02
NEDD8-203ENST00000524927 SMARCA2P51531 1590 aa14.94□□□□□ -0.02
NEDD8-203ENST00000524927 IFNL1Q8IU54 200 aa14.93□□□□□ -0.02
NEDD8-203ENST00000524927 POTEGQ6S5H5 508 aa14.92□□□□□ -0.02
NEDD8-203ENST00000524927 MAMSTRQ6ZN01 415 aa14.92□□□□□ -0.02
NEDD8-203ENST00000524927 TRIM35Q9UPQ4 493 aa14.89□□□□□ -0.03
NEDD8-203ENST00000524927 SGIP1Q9BQI5 828 aa14.87□□□□□ -0.03
NEDD8-203ENST00000524927 PCDH10Q9P2E7 1040 aa14.87□□□□□ -0.03
NEDD8-203ENST00000524927 ZBTB47Q9UFB7 747 aaPredicted RBP14.86□□□□□ -0.03
NEDD8-203ENST00000524927 LAMC3Q9Y6N6 1575 aa14.85□□□□□ -0.03
NEDD8-203ENST00000524927 ARHGEF11O15085 1522 aa14.84□□□□□ -0.03
NEDD8-203ENST00000524927 ZCCHC6Q5VYS8 1495 aaKnown RBP14.83□□□□□ -0.03
NEDD8-203ENST00000524927 PDS5BQ9NTI5 1447 aa14.83□□□□□ -0.04
NEDD8-203ENST00000524927 KIF21AQ7Z4S6 1674 aa14.82□□□□□ -0.04
NEDD8-203ENST00000524927 FAM212AQ96EL1 285 aa14.82□□□□□ -0.04
NEDD8-203ENST00000524927 FAM163AQ96GL9 167 aaPredicted RBP14.81□□□□□ -0.04
NEDD8-203ENST00000524927 SCUBE2Q9NQ36 999 aa14.81□□□□□ -0.04
NEDD8-203ENST00000524927 VASPP50552 380 aaPredicted RBP14.8□□□□□ -0.04
NEDD8-203ENST00000524927 SEC24BO95487 1268 aa14.79□□□□□ -0.04
NEDD8-203ENST00000524927 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
NEDD8-203ENST00000524927 CYB5RLQ6IPT4 315 aa14.79□□□□□ -0.04
NEDD8-203ENST00000524927 PYGBP11216 843 aa14.78□□□□□ -0.04
NEDD8-203ENST00000524927 TMEM106CQ9BVX2 250 aa14.78□□□□□ -0.04
NEDD8-203ENST00000524927 ATAD2BQ9ULI0 1458 aa14.77□□□□□ -0.04
NEDD8-203ENST00000524927 DCAF8Q5TAQ9 597 aa14.77□□□□□ -0.05
NEDD8-203ENST00000524927 WDR62O43379 1518 aa14.75□□□□□ -0.05
NEDD8-203ENST00000524927 MRC2Q9UBG0 1479 aa14.75□□□□□ -0.05
NEDD8-203ENST00000524927 IER5LQ5T953 404 aa14.74□□□□□ -0.05
NEDD8-203ENST00000524927 PCDHB8Q9UN66 801 aa14.72□□□□□ -0.05
NEDD8-203ENST00000524927 IRX5P78411 483 aaPredicted RBP14.68□□□□□ -0.06
NEDD8-203ENST00000524927 IFNLR1Q8IU57 520 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-203ENST00000524927 ARAP1Q96P48 1450 aa14.61□□□□□ -0.07
NEDD8-203ENST00000524927 SLC24A1O60721 1099 aa14.6□□□□□ -0.07
NEDD8-203ENST00000524927 PLCG2P16885 1265 aa14.59□□□□□ -0.07
NEDD8-203ENST00000524927 KLHL34Q8N239 644 aa14.58□□□□□ -0.08
NEDD8-203ENST00000524927 SLAIN1Q8ND83 568 aa14.58□□□□□ -0.08
NEDD8-203ENST00000524927 BAZ1BQ9UIG0 1483 aaKnown RBP14.56□□□□□ -0.08
NEDD8-203ENST00000524927 OCEL1Q9H607 264 aa14.53□□□□□ -0.08
NEDD8-203ENST00000524927 CADPSQ9ULU8 1353 aa14.5□□□□□ -0.09
NEDD8-203ENST00000524927 ST18O60284 1047 aa14.5□□□□□ -0.09
NEDD8-203ENST00000524927 GSE1Q14687 1217 aa14.47□□□□□ -0.09
NEDD8-203ENST00000524927 PDCD7Q8N8D1 485 aaKnown RBP14.45□□□□□ -0.1
NEDD8-203ENST00000524927 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
NEDD8-203ENST00000524927 CHRM1P11229 460 aaPredicted RBP14.44□□□□□ -0.1
NEDD8-203ENST00000524927 CEP164Q9UPV0 1460 aa14.44□□□□□ -0.1
NEDD8-203ENST00000524927 SMARCA4P51532 1647 aa14.43□□□□□ -0.1
NEDD8-203ENST00000524927 CDAN1Q8IWY9 1227 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms