RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 KIF21AQ7Z4S6 1674 aa9.04□□□□□ -0.96
HMGB1P23-201ENST00000518743 DAXXQ9UER7 740 aaPredicted RBP9.02□□□□□ -0.97
HMGB1P23-201ENST00000518743 LMTK3Q96Q04 1460 aa9□□□□□ -0.97
HMGB1P23-201ENST00000518743 PDE4AP27815 886 aa8.99□□□□□ -0.97
HMGB1P23-201ENST00000518743 TRPC6Q9Y210 931 aa8.99□□□□□ -0.97
HMGB1P23-201ENST00000518743 ARXQ96QS3 562 aa8.98□□□□□ -0.97
HMGB1P23-201ENST00000518743 EFCAB3Q8N7B9 438 aa8.97□□□□□ -0.97
HMGB1P23-201ENST00000518743 FBXO22Q8NEZ5 403 aa8.97□□□□□ -0.97
HMGB1P23-201ENST00000518743 CABP2Q9NPB3 220 aa8.97□□□□□ -0.97
HMGB1P23-201ENST00000518743 TESPA1A2RU30 521 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P23-201ENST00000518743 IFNL1Q8IU54 200 aa8.96□□□□□ -0.98
HMGB1P23-201ENST00000518743 PELP1Q8IZL8 1130 aaKnown RBP8.95□□□□□ -0.98
HMGB1P23-201ENST00000518743 ZC3H15Q8WU90 426 aaKnown RBP8.95□□□□□ -0.98
HMGB1P23-201ENST00000518743 ARIH1Q9Y4X5 557 aaPredicted RBP8.95□□□□□ -0.98
HMGB1P23-201ENST00000518743 GOLGA2Q08379 1002 aa8.94□□□□□ -0.98
HMGB1P23-201ENST00000518743 C14orf37Q86TY3 774 aa8.94□□□□□ -0.98
HMGB1P23-201ENST00000518743 SOCS7O14512 581 aa8.92□□□□□ -0.98
HMGB1P23-201ENST00000518743 ATMINO43313 823 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P23-201ENST00000518743 BMP2KQ9NSY1 1161 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P23-201ENST00000518743 PHF8Q9UPP1 1060 aa8.92□□□□□ -0.98
HMGB1P23-201ENST00000518743 PDS5BQ9NTI5 1447 aa8.91□□□□□ -0.98
HMGB1P23-201ENST00000518743 PPP1R37O75864 691 aa8.91□□□□□ -0.98
HMGB1P23-201ENST00000518743 BRPF1P55201 1214 aaPredicted RBP8.91□□□□□ -0.98
HMGB1P23-201ENST00000518743 MFSD10Q14728 455 aa8.91□□□□□ -0.98
HMGB1P23-201ENST00000518743 LAMC3Q9Y6N6 1575 aa8.9□□□□□ -0.98
HMGB1P23-201ENST00000518743 ATN1P54259 1190 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P23-201ENST00000518743 ASTLQ6HA08 431 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P23-201ENST00000518743 DDX27Q96GQ7 796 aaKnown RBP8.9□□□□□ -0.98
HMGB1P23-201ENST00000518743 LARP6Q9BRS8 491 aaKnown RBP8.9□□□□□ -0.98
HMGB1P23-201ENST00000518743 NCAPD3P42695 1498 aa8.89□□□□□ -0.99
HMGB1P23-201ENST00000518743 ARAP1Q96P48 1450 aa8.89□□□□□ -0.99
HMGB1P23-201ENST00000518743 SEMA3EO15041 775 aa8.89□□□□□ -0.99
HMGB1P23-201ENST00000518743 NEUROD2Q15784 382 aa8.89□□□□□ -0.99
HMGB1P23-201ENST00000518743 MRC2Q9UBG0 1479 aa8.89□□□□□ -0.99
HMGB1P23-201ENST00000518743 TTLL13PA6NNM8 815 aa8.87□□□□□ -0.99
HMGB1P23-201ENST00000518743 FBXO41Q8TF61 875 aa8.87□□□□□ -0.99
HMGB1P23-201ENST00000518743 ZMYND10O75800 440 aa8.86□□□□□ -0.99
HMGB1P23-201ENST00000518743 CRISPLD2Q9H0B8 497 aa8.86□□□□□ -0.99
HMGB1P23-201ENST00000518743 WDR62O43379 1518 aa8.85□□□□□ -0.99
HMGB1P23-201ENST00000518743 NCKAP5LQ9HCH0 1330 aa8.85□□□□□ -0.99
HMGB1P23-201ENST00000518743 TIE1P35590 1138 aa8.85□□□□□ -0.99
HMGB1P23-201ENST00000518743 MKRN3Q13064 507 aaKnown RBP8.85□□□□□ -0.99
HMGB1P23-201ENST00000518743 TMEM106CQ9BVX2 250 aa8.85□□□□□ -0.99
HMGB1P23-201ENST00000518743 CAMK2BQ13554 666 aa8.84□□□□□ -0.99
HMGB1P23-201ENST00000518743 LHX8Q68G74 356 aa8.84□□□□□ -0.99
HMGB1P23-201ENST00000518743 SLC24A3Q9HC58 644 aa8.84□□□□□ -0.99
HMGB1P23-201ENST00000518743 METRNQ9UJH8 293 aa8.83□□□□□ -1
HMGB1P23-201ENST00000518743 ERCC6L2Q5T890 1561 aa8.82□□□□□ -1
HMGB1P23-201ENST00000518743 BARGINQ6ZT62 677 aa8.81□□□□□ -1
HMGB1P23-201ENST00000518743 TRIM35Q9UPQ4 493 aa8.81□□□□□ -1
HMGB1P23-201ENST00000518743 C7P10643 843 aa8.8□□□□□ -1
HMGB1P23-201ENST00000518743 ILDR2Q71H61 639 aa8.8□□□□□ -1
HMGB1P23-201ENST00000518743 HOMEZQ8IX15 550 aa8.8□□□□□ -1
HMGB1P23-201ENST00000518743 SLC39A7Q92504 469 aa8.8□□□□□ -1
HMGB1P23-201ENST00000518743 POTEB2H3BUK9 544 aa8.79□□□□□ -1
HMGB1P23-201ENST00000518743 AK7Q96M32 723 aa8.79□□□□□ -1
HMGB1P23-201ENST00000518743 HMGXB3Q12766 1538 aa8.79□□□□□ -1
HMGB1P23-201ENST00000518743 SPDYE16A6NNV3 312 aaPredicted RBP8.78□□□□□ -1
HMGB1P23-201ENST00000518743 GPIHBP1Q8IV16 184 aa8.78□□□□□ -1
HMGB1P23-201ENST00000518743 MS4A4AQ96JQ5 239 aa8.78□□□□□ -1
HMGB1P23-201ENST00000518743 ATAD2BQ9ULI0 1458 aa8.77□□□□□ -1
HMGB1P23-201ENST00000518743 DISP3Q9P2K9 1392 aa8.77□□□□□ -1.01
HMGB1P23-201ENST00000518743 KDM4FA0A1W2PPD8 638 aa8.76□□□□□ -1.01
HMGB1P23-201ENST00000518743 GPHNQ9NQX3 736 aaPredicted RBP8.76□□□□□ -1.01
HMGB1P23-201ENST00000518743 COLQQ9Y215 455 aaPredicted RBP8.76□□□□□ -1.01
HMGB1P23-201ENST00000518743 POTEFA5A3E0 1075 aa8.75□□□□□ -1.01
HMGB1P23-201ENST00000518743 PPP1R15BQ5SWA1 713 aa8.75□□□□□ -1.01
HMGB1P23-201ENST00000518743 KRI1Q8N9T8 703 aaKnown RBP8.75□□□□□ -1.01
HMGB1P23-201ENST00000518743 SEC24BO95487 1268 aa8.73□□□□□ -1.01
HMGB1P23-201ENST00000518743 HECW2Q9P2P5 1572 aa8.73□□□□□ -1.01
HMGB1P23-201ENST00000518743 BAZ1BQ9UIG0 1483 aaKnown RBP8.72□□□□□ -1.01
HMGB1P23-201ENST00000518743 POTEJP0CG39 1038 aa8.72□□□□□ -1.01
HMGB1P23-201ENST00000518743 DCAF1Q9Y4B6 1507 aa8.71□□□□□ -1.01
HMGB1P23-201ENST00000518743 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.71□□□□□ -1.02
HMGB1P23-201ENST00000518743 IER5LQ5T953 404 aa8.7□□□□□ -1.02
HMGB1P23-201ENST00000518743 RSF1Q96T23 1441 aaPredicted RBP8.7□□□□□ -1.02
HMGB1P23-201ENST00000518743 CEP164Q9UPV0 1460 aa8.7□□□□□ -1.02
HMGB1P23-201ENST00000518743 PDIA6Q15084 440 aa8.69□□□□□ -1.02
HMGB1P23-201ENST00000518743 TMC2Q8TDI7 906 aa8.69□□□□□ -1.02
HMGB1P23-201ENST00000518743 CHD1O14646 1710 aa8.68□□□□□ -1.02
HMGB1P23-201ENST00000518743 OTUD5Q96G74 571 aa8.68□□□□□ -1.02
HMGB1P23-201ENST00000518743 RBM26Q5T8P6 1007 aaKnown RBP8.67□□□□□ -1.02
HMGB1P23-201ENST00000518743 ZCCHC6Q5VYS8 1495 aaKnown RBP8.66□□□□□ -1.02
HMGB1P23-201ENST00000518743 PLCG2P16885 1265 aa8.66□□□□□ -1.02
HMGB1P23-201ENST00000518743 IRX5P78411 483 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P23-201ENST00000518743 G3V3G9 751 aa8.65□□□□□ -1.02
HMGB1P23-201ENST00000518743 MLLT3P42568 568 aaPredicted RBP8.65□□□□□ -1.02
HMGB1P23-201ENST00000518743 FOXK1P85037 733 aa8.65□□□□□ -1.02
HMGB1P23-201ENST00000518743 DPYSL4O14531 572 aa8.64□□□□□ -1.03
HMGB1P23-201ENST00000518743 KDM4CQ9H3R0 1056 aa8.63□□□□□ -1.03
HMGB1P23-201ENST00000518743 OCEL1Q9H607 264 aa8.63□□□□□ -1.03
HMGB1P23-201ENST00000518743 CADPSQ9ULU8 1353 aa8.62□□□□□ -1.03
HMGB1P23-201ENST00000518743 MINK1Q8N4C8 1332 aaPredicted RBP8.62□□□□□ -1.03
HMGB1P23-201ENST00000518743 TRIM66O15016 1216 aa8.62□□□□□ -1.03
HMGB1P23-201ENST00000518743 PDE4DQ08499 809 aa8.62□□□□□ -1.03
HMGB1P23-201ENST00000518743 SYNJ2O15056 1496 aa8.61□□□□□ -1.03
HMGB1P23-201ENST00000518743 SMARCA4P51532 1647 aa8.61□□□□□ -1.03
HMGB1P23-201ENST00000518743 ZNF608Q9ULD9 1512 aaPredicted RBP8.6□□□□□ -1.03
HMGB1P23-201ENST00000518743 DSG2Q14126 1118 aa8.6□□□□□ -1.03
HMGB1P23-201ENST00000518743 MICALL2Q8IY33 904 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms