RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 WDR7Q9Y4E6 1490 aa23.75■■□□□ 1.39
NUP54-214ENST00000514307 ASXL2Q76L83 1435 aa23.74■■□□□ 1.39
NUP54-214ENST00000514307 TSPY4P0CV99 314 aa23.72■■□□□ 1.39
NUP54-214ENST00000514307 TSPY10P0CW01 314 aa23.72■■□□□ 1.39
NUP54-214ENST00000514307 ITSN2Q9NZM3 1697 aa23.71■■□□□ 1.39
NUP54-214ENST00000514307 PLCH2O75038 1416 aa23.7■■□□□ 1.38
NUP54-214ENST00000514307 CHIC2Q9UKJ5 165 aa23.69■■□□□ 1.38
NUP54-214ENST00000514307 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.68■■□□□ 1.388e-6■□□□□ 10.5
NUP54-214ENST00000514307 KIF13AQ9H1H9 1805 aa23.66■■□□□ 1.38
NUP54-214ENST00000514307 CAMSAP2Q08AD1 1489 aa23.65■■□□□ 1.38
NUP54-214ENST00000514307 HNRNPMP52272 730 aaKnown RBP eCLIP23.65■■□□□ 1.381e-7■■■■□ 25.9
NUP54-214ENST00000514307 ABCC5O15440 1437 aa23.65■■□□□ 1.38
NUP54-214ENST00000514307 DAPK1P53355 1430 aa23.65■■□□□ 1.38
NUP54-214ENST00000514307 PTPRKQ15262 1439 aa23.65■■□□□ 1.38
NUP54-214ENST00000514307 ROCK1Q13464 1354 aa23.65■■□□□ 1.38
NUP54-214ENST00000514307 PLEKHH2Q8IVE3 1493 aa23.64■■□□□ 1.38
NUP54-214ENST00000514307 RAB3GAP2Q9H2M9 1393 aa23.64■■□□□ 1.37
NUP54-214ENST00000514307 RRP7BPQ9NSQ0 103 aa23.62■■□□□ 1.37
NUP54-214ENST00000514307 HFM1A2PYH4 1435 aa23.61■■□□□ 1.37
NUP54-214ENST00000514307 KIAA1107Q9UPP5 1409 aa23.61■■□□□ 1.37
NUP54-214ENST00000514307 ARHGAP5Q13017 1502 aa23.61■■□□□ 1.37
NUP54-214ENST00000514307 CLSPNQ9HAW4 1339 aa23.6■■□□□ 1.37
NUP54-214ENST00000514307 AKNAQ7Z591 1439 aa23.59■■□□□ 1.37
NUP54-214ENST00000514307 CDC42BPAQ5VT25 1732 aa23.58■■□□□ 1.37
NUP54-214ENST00000514307 ANKRD30AQ9BXX3 1397 aa23.57■■□□□ 1.36
NUP54-214ENST00000514307 ARAP3Q8WWN8 1544 aa23.57■■□□□ 1.36
NUP54-214ENST00000514307 NAIPQ13075 1403 aa23.55■■□□□ 1.36
NUP54-214ENST00000514307 TTC37Q6PGP7 1564 aa23.55■■□□□ 1.36
NUP54-214ENST00000514307 DNMT1P26358 1616 aaKnown RBP23.55■■□□□ 1.36
NUP54-214ENST00000514307 PREX2Q70Z35 1606 aa23.55■■□□□ 1.36
NUP54-214ENST00000514307 MAPKBP1O60336 1514 aa23.54■■□□□ 1.36
NUP54-214ENST00000514307 CD109Q6YHK3 1445 aa23.53■■□□□ 1.36
NUP54-214ENST00000514307 MBD5Q9P267 1494 aa23.52■■□□□ 1.36
NUP54-214ENST00000514307 DIP2BQ9P265 1576 aa23.52■■□□□ 1.36
NUP54-214ENST00000514307 MYO5CQ9NQX4 1742 aa23.51■■□□□ 1.35
NUP54-214ENST00000514307 ABCA9Q8IUA7 1624 aa23.51■■□□□ 1.35
NUP54-214ENST00000514307 NCOA1Q15788 1441 aa23.5■■□□□ 1.35
NUP54-214ENST00000514307 DHX57Q6P158 1386 aaKnown RBP23.5■■□□□ 1.35
NUP54-214ENST00000514307 ARHGEF5Q12774 1597 aa23.49■■□□□ 1.35
NUP54-214ENST00000514307 CCDC141Q6ZP82 1450 aa23.49■■□□□ 1.35
NUP54-214ENST00000514307 CDC42BPBQ9Y5S2 1711 aa23.48■■□□□ 1.35
NUP54-214ENST00000514307 SHANK2Q9UPX8 1470 aa23.48■■□□□ 1.35
NUP54-214ENST00000514307 TSPOAP1O95153 1857 aa23.47■■□□□ 1.35
NUP54-214ENST00000514307 FAM69CQ0P6D2 419 aa23.47■■□□□ 1.35
NUP54-214ENST00000514307 TRIM52Q96A61 297 aa23.47■■□□□ 1.35
NUP54-214ENST00000514307 FANCAO15360 1455 aa23.47■■□□□ 1.35
NUP54-214ENST00000514307 ADGRL2O95490 1459 aa23.46■■□□□ 1.35
NUP54-214ENST00000514307 C9orf84Q5VXU9 1444 aa23.46■■□□□ 1.35
NUP54-214ENST00000514307 SAMD9LQ8IVG5 1584 aa23.46■■□□□ 1.35
NUP54-214ENST00000514307 SPAG9O60271 1321 aaKnown RBP23.42■■□□□ 1.34
NUP54-214ENST00000514307 SCAPERQ9BY12 1400 aa23.4■■□□□ 1.34
NUP54-214ENST00000514307 AFAP1Q8N556 730 aa23.39■■□□□ 1.33
NUP54-214ENST00000514307 GLI2P10070 1586 aa23.38■■□□□ 1.33
NUP54-214ENST00000514307 SYCP2Q9BX26 1530 aa23.38■■□□□ 1.33
NUP54-214ENST00000514307 RTEL1-TNFRSF6BF6WH68 1400 aa23.37■■□□□ 1.33
NUP54-214ENST00000514307 MYT1LQ9UL68 1186 aa23.37■■□□□ 1.33
NUP54-214ENST00000514307 ARHGEF12Q9NZN5 1544 aa23.36■■□□□ 1.33
NUP54-214ENST00000514307 KIF15Q9NS87 1388 aa23.36■■□□□ 1.33
NUP54-214ENST00000514307 ADGRL1O94910 1474 aa23.36■■□□□ 1.33
NUP54-214ENST00000514307 ANKRD50Q9ULJ7 1429 aa23.35■■□□□ 1.33
NUP54-214ENST00000514307 TRAPPC8Q9Y2L5 1435 aa23.34■■□□□ 1.33
NUP54-214ENST00000514307 ABCC1P33527 1531 aa23.34■■□□□ 1.33
NUP54-214ENST00000514307 MPHOSPH9Q99550 1183 aa23.34■■□□□ 1.33
NUP54-214ENST00000514307 NEO1Q92859 1461 aa23.34■■□□□ 1.33
NUP54-214ENST00000514307 MAST1Q9Y2H9 1570 aa23.31■■□□□ 1.32
NUP54-214ENST00000514307 CFAP74Q9C0B2 1584 aa23.31■■□□□ 1.32
NUP54-214ENST00000514307 GCC2Q8IWJ2 1684 aa23.3■■□□□ 1.32
NUP54-214ENST00000514307 TIMELESSQ9UNS1 1208 aa23.3■■□□□ 1.32
NUP54-214ENST00000514307 CROCC2H7BZ55 1655 aa23.29■■□□□ 1.32
NUP54-214ENST00000514307 ADGBQ8N7X0 1667 aa23.29■■□□□ 1.32
NUP54-214ENST00000514307 SLC4A1APQ9BWU0 796 aaKnown RBP23.28■■□□□ 1.32
NUP54-214ENST00000514307 PPRC1Q5VV67 1664 aaKnown RBP23.28■■□□□ 1.32
NUP54-214ENST00000514307 ZNF518AQ6AHZ1 1483 aa23.25■■□□□ 1.31
NUP54-214ENST00000514307 DENND4BO75064 1496 aaPredicted RBP23.24■■□□□ 1.31
NUP54-214ENST00000514307 TEX14Q8IWB6 1497 aa23.24■■□□□ 1.31
NUP54-214ENST00000514307 NUP155O75694 1391 aa23.23■■□□□ 1.31
NUP54-214ENST00000514307 DUOX2Q9NRD8 1548 aa23.22■■□□□ 1.31
NUP54-214ENST00000514307 MAP3K4Q9Y6R4 1608 aa23.22■■□□□ 1.31
NUP54-214ENST00000514307 KDM6BO15054 1643 aa23.2■■□□□ 1.3
NUP54-214ENST00000514307 NEUROD1Q13562 356 aa23.2■■□□□ 1.3
NUP54-214ENST00000514307 ERBINQ96RT1 1412 aa23.18■■□□□ 1.3
NUP54-214ENST00000514307 RAPGEF3O95398 923 aa23.18■■□□□ 1.3
NUP54-214ENST00000514307 PLXNC1O60486 1568 aa23.18■■□□□ 1.3
NUP54-214ENST00000514307 POGZQ7Z3K3 1410 aa23.17■■□□□ 1.3
NUP54-214ENST00000514307 DHX29Q7Z478 1369 aaKnown RBP23.17■■□□□ 1.3
NUP54-214ENST00000514307 SIN3AQ96ST3 1273 aa23.16■■□□□ 1.3
NUP54-214ENST00000514307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.16■■□□□ 1.3
NUP54-214ENST00000514307 MLH3Q9UHC1 1453 aa23.16■■□□□ 1.3
NUP54-214ENST00000514307 PKD2Q13563 968 aa23.14■■□□□ 1.29
NUP54-214ENST00000514307 ATP7AQ04656 1500 aa23.13■■□□□ 1.29
NUP54-214ENST00000514307 KIF3BO15066 747 aa23.1■■□□□ 1.29
NUP54-214ENST00000514307 ZFYVE16Q7Z3T8 1539 aa23.09■■□□□ 1.29
NUP54-214ENST00000514307 KANK1Q14678 1352 aa23.09■■□□□ 1.29
NUP54-214ENST00000514307 PZPP20742 1482 aa23.07■■□□□ 1.28
NUP54-214ENST00000514307 ANKRD30BQ9BXX2 1392 aa23.06■■□□□ 1.28
NUP54-214ENST00000514307 KDM5CP41229 1560 aa23.06■■□□□ 1.28
NUP54-214ENST00000514307 FOXD1Q16676 465 aa23.05■■□□□ 1.28
NUP54-214ENST00000514307 INO80Q9ULG1 1556 aaPredicted RBP23.05■■□□□ 1.28
NUP54-214ENST00000514307 TONSLQ96HA7 1378 aa23.04■■□□□ 1.28
NUP54-214ENST00000514307 KDM5DQ9BY66 1539 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms