RNA–Protein interactions for RNA: ENST00000509848.5

ARHGEF28-208, Transcript of Rho guanine nucleotide exchange factor 28, human

TSL 4

Gene ARHGEF28, Length 560 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF28-208	ENST00000509848	POGZ	Q7Z3K3	1410 aa		32.21	■■■□□ 2.75
ARHGEF28-208	ENST00000509848	ZMYM4	Q5VZL5	1548 aa		32.21	■■■□□ 2.75
ARHGEF28-208	ENST00000509848	PTPRM	P28827	1452 aa		32.2	■■■□□ 2.75
ARHGEF28-208	ENST00000509848	BCORL1	Q5H9F3	1711 aa		32.19	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	ZFYVE16	Q7Z3T8	1539 aa		32.19	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	CCDC18	Q5T9S5	1454 aa		32.18	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	ARHGAP5	Q13017	1502 aa		32.18	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	MAGI2	Q86UL8	1455 aa		32.15	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	FYCO1	Q9BQS8	1478 aa		32.14	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	MADD	Q8WXG6	1647 aa		32.14	■■■□□ 2.74
ARHGEF28-208	ENST00000509848	AFAP1	Q8N556	730 aa		32.13	■■■□□ 2.73
ARHGEF28-208	ENST00000509848	MLEC	Q14165	292 aa		32.12	■■■□□ 2.73
ARHGEF28-208	ENST00000509848	SIGLEC1	Q9BZZ2	1709 aa		32.09	■■■□□ 2.73
ARHGEF28-208	ENST00000509848	PLPPR3	Q6T4P5	718 aa		32.08	■■■□□ 2.73
ARHGEF28-208	ENST00000509848	MYT1L	Q9UL68	1186 aa		32.06	■■■□□ 2.72
ARHGEF28-208	ENST00000509848	CDC42BPB	Q9Y5S2	1711 aa		32.04	■■■□□ 2.72
ARHGEF28-208	ENST00000509848	ATP10A	O60312	1499 aa		32.03	■■■□□ 2.72
ARHGEF28-208	ENST00000509848	ZNF518A	Q6AHZ1	1483 aa		32.03	■■■□□ 2.72
ARHGEF28-208	ENST00000509848	RIMS1	Q86UR5	1692 aa	Known RBP	32.02	■■■□□ 2.72
ARHGEF28-208	ENST00000509848	PREX2	Q70Z35	1606 aa		31.99	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	ZNF777	Q9ULD5	760 aa	Predicted RBP	31.98	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	ARHGEF12	Q9NZN5	1544 aa		31.98	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	C9orf84	Q5VXU9	1444 aa		31.98	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	TRAPPC8	Q9Y2L5	1435 aa		31.98	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	KDM5C	P41229	1560 aa		31.95	■■■□□ 2.71
ARHGEF28-208	ENST00000509848	CEP162	Q5TB80	1403 aa		31.94	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	ABCC1	P33527	1531 aa		31.93	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	CDC42BPA	Q5VT25	1732 aa		31.92	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.9	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	LOC105371045	A0A1W2PR82	267 aa		31.9	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	MTUS2	Q5JR59	1369 aa		31.89	■■■□□ 2.7
ARHGEF28-208	ENST00000509848	MLH3	Q9UHC1	1453 aa		31.87	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	ILDR1	Q86SU0	546 aa	Predicted RBP	31.87	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	DIP2C	Q9Y2E4	1556 aa		31.86	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	LMTK3	Q96Q04	1460 aa		31.85	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	HNRNPM	P52272	730 aa	Known RBP eCLIP	31.85	■■■□□ 2.69	4e-6	■■■□□ 18.4
ARHGEF28-208	ENST00000509848	ITSN2	Q9NZM3	1697 aa		31.85	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.84	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	CCNB3	Q8WWL7	1395 aa		31.83	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	FER1L4	A9Z1Z3	1794 aa		31.83	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	ABCA6	Q8N139	1617 aa		31.82	■■■□□ 2.69
ARHGEF28-208	ENST00000509848	SAMD9L	Q8IVG5	1584 aa		31.82	■■■□□ 2.68
ARHGEF28-208	ENST00000509848	CEBPA	P49715	358 aa	Predicted RBP	31.82	■■■□□ 2.68
ARHGEF28-208	ENST00000509848	HSPA2	P54652	639 aa		31.81	■■■□□ 2.68
ARHGEF28-208	ENST00000509848	SYCP2	Q9BX26	1530 aa		31.78	■■■□□ 2.68
ARHGEF28-208	ENST00000509848	SPAG9	O60271	1321 aa	Known RBP	31.75	■■■□□ 2.67
ARHGEF28-208	ENST00000509848	KIDINS220	Q9ULH0	1771 aa		31.73	■■■□□ 2.67
ARHGEF28-208	ENST00000509848	RERE	Q9P2R6	1566 aa		31.73	■■■□□ 2.67
ARHGEF28-208	ENST00000509848	ZNF644	Q9H582	1327 aa	Predicted RBP	31.73	■■■□□ 2.67
ARHGEF28-208	ENST00000509848	EHBP1L1	Q8N3D4	1523 aa		31.7	■■■□□ 2.67
ARHGEF28-208	ENST00000509848	KIAA1107	Q9UPP5	1409 aa		31.69	■■■□□ 2.66
ARHGEF28-208	ENST00000509848	PLEKHH2	Q8IVE3	1493 aa		31.67	■■■□□ 2.66
ARHGEF28-208	ENST00000509848	AGL	P35573	1532 aa		31.67	■■■□□ 2.66
ARHGEF28-208	ENST00000509848	TIAM1	Q13009	1591 aa		31.67	■■■□□ 2.66
ARHGEF28-208	ENST00000509848	ESF1	Q9H501	851 aa	Known RBP	31.65	■■■□□ 2.66
ARHGEF28-208	ENST00000509848	ATP7A	Q04656	1500 aa		31.59	■■■□□ 2.65
ARHGEF28-208	ENST00000509848	NCOA2	Q15596	1464 aa		31.58	■■■□□ 2.65
ARHGEF28-208	ENST00000509848	VPS8	Q8N3P4	1428 aa		31.58	■■■□□ 2.65
ARHGEF28-208	ENST00000509848	MBD5	Q9P267	1494 aa		31.55	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	INO80	Q9ULG1	1556 aa	Predicted RBP	31.55	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	A2M	P01023	1474 aa		31.53	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.52	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	C3	P01024	1663 aa		31.51	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	PREX1	Q8TCU6	1659 aa		31.51	■■■□□ 2.64
ARHGEF28-208	ENST00000509848	UHRF1BP1	Q6BDS2	1440 aa		31.49	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	KANK4	Q5T7N3	995 aa	Predicted RBP	31.48	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	GGT6	Q6P531	493 aa		31.48	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	CNTLN	Q9NXG0	1405 aa		31.48	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	LRRC9	Q6ZRR7	1453 aa		31.46	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	PLXNC1	O60486	1568 aa		31.45	■■■□□ 2.63
ARHGEF28-208	ENST00000509848	CAMSAP2	Q08AD1	1489 aa		31.45	■■■□□ 2.62
ARHGEF28-208	ENST00000509848	ZMYM3	Q14202	1370 aa		31.43	■■■□□ 2.62
ARHGEF28-208	ENST00000509848	FBXO41	Q8TF61	875 aa		31.43	■■■□□ 2.62
ARHGEF28-208	ENST00000509848	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.41	■■■□□ 2.62
ARHGEF28-208	ENST00000509848	CCDC141	Q6ZP82	1450 aa		31.39	■■■□□ 2.62
ARHGEF28-208	ENST00000509848	SETD1B	Q9UPS6	1966 aa	Known RBP	31.37	■■■□□ 2.61
ARHGEF28-208	ENST00000509848	ADGB	Q8N7X0	1667 aa		31.36	■■■□□ 2.61
ARHGEF28-208	ENST00000509848	DHX29	Q7Z478	1369 aa	Known RBP	31.36	■■■□□ 2.61
ARHGEF28-208	ENST00000509848	RSPH4A	Q5TD94	716 aa		31.36	■■■□□ 2.61
ARHGEF28-208	ENST00000509848	CLTC	Q00610	1675 aa	Known RBP	31.35	■■■□□ 2.61
ARHGEF28-208	ENST00000509848	MROH2A	A6NES4	1674 aa		31.32	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	KIF3B	O15066	747 aa		31.32	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	MAP3K1	Q13233	1512 aa		31.32	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	STRC	Q7RTU9	1775 aa		31.31	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	NPAT	Q14207	1427 aa		31.31	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	TSPY4	P0CV99	314 aa		31.3	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	TSPY10	P0CW01	314 aa		31.3	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	DMRT2	Q9Y5R5	561 aa		31.3	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	CERK	Q8TCT0	537 aa		31.28	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	PPP6R1	Q9UPN7	881 aa		31.28	■■■□□ 2.6
ARHGEF28-208	ENST00000509848	ARHGEF5	Q12774	1597 aa		31.26	■■■□□ 2.59
ARHGEF28-208	ENST00000509848	PTPRK	Q15262	1439 aa		31.25	■■■□□ 2.59
ARHGEF28-208	ENST00000509848	APLP2	Q06481	763 aa		31.24	■■■□□ 2.59
ARHGEF28-208	ENST00000509848	MYOM3	Q5VTT5	1437 aa		31.23	■■■□□ 2.59
ARHGEF28-208	ENST00000509848	NCOA1	Q15788	1441 aa		31.18	■■■□□ 2.58
ARHGEF28-208	ENST00000509848	MIA2	Q96PC5	1412 aa		31.18	■■■□□ 2.58
ARHGEF28-208	ENST00000509848	CAMSAP1	Q5T5Y3	1602 aa		31.16	■■■□□ 2.58
ARHGEF28-208	ENST00000509848	PTPRT	O14522	1441 aa		31.16	■■■□□ 2.58
ARHGEF28-208	ENST00000509848	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.16	■■■□□ 2.58
ARHGEF28-208	ENST00000509848	NCKAP5L	Q9HCH0	1330 aa		31.16	■■■□□ 2.58

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms