RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 VPS8Q8N3P4 1428 aa25.6■■□□□ 1.69
PDLIM5-212ENST00000509333 ARHGAP5Q13017 1502 aa25.59■■□□□ 1.69
PDLIM5-212ENST00000509333 GPATCH8Q9UKJ3 1502 aaKnown RBP25.58■■□□□ 1.69
PDLIM5-212ENST00000509333 RICTORQ6R327 1708 aa25.57■■□□□ 1.68
PDLIM5-212ENST00000509333 ZNF777Q9ULD5 760 aaPredicted RBP25.56■■□□□ 1.68
PDLIM5-212ENST00000509333 CDC42BPBQ9Y5S2 1711 aa25.56■■□□□ 1.68
PDLIM5-212ENST00000509333 CFDP1Q9UEE9 299 aaPredicted RBP25.55■■□□□ 1.68
PDLIM5-212ENST00000509333 POGZQ7Z3K3 1410 aa25.54■■□□□ 1.68
PDLIM5-212ENST00000509333 CCNB3Q8WWL7 1395 aa25.53■■□□□ 1.68
PDLIM5-212ENST00000509333 MAGI2Q86UL8 1455 aa25.53■■□□□ 1.68
PDLIM5-212ENST00000509333 YEATS2Q9ULM3 1422 aa25.52■■□□□ 1.68
PDLIM5-212ENST00000509333 ARID4BQ4LE39 1312 aaPredicted RBP25.51■■□□□ 1.67
PDLIM5-212ENST00000509333 ARHGEF12Q9NZN5 1544 aa25.51■■□□□ 1.67
PDLIM5-212ENST00000509333 HNRNPMP52272 730 aaKnown RBP eCLIP25.5■■□□□ 1.675e-6■■■□□ 18.5
PDLIM5-212ENST00000509333 KANK4Q5T7N3 995 aaPredicted RBP25.5■■□□□ 1.67
PDLIM5-212ENST00000509333 ZMYM4Q5VZL5 1548 aa25.49■■□□□ 1.67
PDLIM5-212ENST00000509333 TRAPPC8Q9Y2L5 1435 aa25.48■■□□□ 1.67
PDLIM5-212ENST00000509333 CDC42BPAQ5VT25 1732 aa25.48■■□□□ 1.67
PDLIM5-212ENST00000509333 PREX2Q70Z35 1606 aa25.48■■□□□ 1.67
PDLIM5-212ENST00000509333 ZNF644Q9H582 1327 aaPredicted RBP25.45■■□□□ 1.66
PDLIM5-212ENST00000509333 MYT1LQ9UL68 1186 aa25.45■■□□□ 1.66
PDLIM5-212ENST00000509333 ZNF518AQ6AHZ1 1483 aa25.45■■□□□ 1.66
PDLIM5-212ENST00000509333 EHBP1L1Q8N3D4 1523 aa25.43■■□□□ 1.66
PDLIM5-212ENST00000509333 ATP10AO60312 1499 aa25.43■■□□□ 1.66
PDLIM5-212ENST00000509333 ZFYVE16Q7Z3T8 1539 aa25.42■■□□□ 1.66
PDLIM5-212ENST00000509333 KIAA1107Q9UPP5 1409 aa25.42■■□□□ 1.66
PDLIM5-212ENST00000509333 TIAM1Q13009 1591 aa25.42■■□□□ 1.66
PDLIM5-212ENST00000509333 MAP3K1Q13233 1512 aa25.42■■□□□ 1.66
PDLIM5-212ENST00000509333 LRRC9Q6ZRR7 1453 aa25.4■■□□□ 1.66
PDLIM5-212ENST00000509333 NCOA2Q15596 1464 aa25.4■■□□□ 1.66
PDLIM5-212ENST00000509333 MLH3Q9UHC1 1453 aa25.4■■□□□ 1.66
PDLIM5-212ENST00000509333 ABCC1P33527 1531 aa25.39■■□□□ 1.66
PDLIM5-212ENST00000509333 ARHGEF40Q8TER5 1519 aa25.39■■□□□ 1.66
PDLIM5-212ENST00000509333 APLP2Q06481 763 aa25.39■■□□□ 1.66
PDLIM5-212ENST00000509333 KDM5CP41229 1560 aa25.38■■□□□ 1.65
PDLIM5-212ENST00000509333 SAMD9LQ8IVG5 1584 aa25.36■■□□□ 1.65
PDLIM5-212ENST00000509333 MLECQ14165 292 aa25.36■■□□□ 1.65
PDLIM5-212ENST00000509333 PLEKHH2Q8IVE3 1493 aa25.35■■□□□ 1.65
PDLIM5-212ENST00000509333 SPAG9O60271 1321 aaKnown RBP25.35■■□□□ 1.65
PDLIM5-212ENST00000509333 ADAMTSL3P82987 1691 aa25.33■■□□□ 1.65
PDLIM5-212ENST00000509333 C9orf84Q5VXU9 1444 aa25.32■■□□□ 1.64
PDLIM5-212ENST00000509333 RSPH4AQ5TD94 716 aa25.31■■□□□ 1.64
PDLIM5-212ENST00000509333 ITSN2Q9NZM3 1697 aa25.31■■□□□ 1.64
PDLIM5-212ENST00000509333 MBD5Q9P267 1494 aa25.3■■□□□ 1.64
PDLIM5-212ENST00000509333 BCORL1Q5H9F3 1711 aa25.3■■□□□ 1.64
PDLIM5-212ENST00000509333 SUPT6HQ7KZ85 1726 aaKnown RBP25.3■■□□□ 1.64
PDLIM5-212ENST00000509333 SYCP2Q9BX26 1530 aa25.29■■□□□ 1.64
PDLIM5-212ENST00000509333 SIGLEC1Q9BZZ2 1709 aa25.29■■□□□ 1.64
PDLIM5-212ENST00000509333 PTPRMP28827 1452 aa25.28■■□□□ 1.64
PDLIM5-212ENST00000509333 HECW2Q9P2P5 1572 aa25.27■■□□□ 1.64
PDLIM5-212ENST00000509333 KIDINS220Q9ULH0 1771 aa25.24■■□□□ 1.63
PDLIM5-212ENST00000509333 DIP2CQ9Y2E4 1556 aa25.23■■□□□ 1.63
PDLIM5-212ENST00000509333 ABCA6Q8N139 1617 aa25.19■■□□□ 1.62
PDLIM5-212ENST00000509333 MADDQ8WXG6 1647 aa25.19■■□□□ 1.62
PDLIM5-212ENST00000509333 REREQ9P2R6 1566 aa25.18■■□□□ 1.62
PDLIM5-212ENST00000509333 TSPY4P0CV99 314 aa25.18■■□□□ 1.62
PDLIM5-212ENST00000509333 TSPY10P0CW01 314 aa25.18■■□□□ 1.62
PDLIM5-212ENST00000509333 RTEL1-TNFRSF6BF6WH68 1400 aa25.17■■□□□ 1.62
PDLIM5-212ENST00000509333 MYOM3Q5VTT5 1437 aa25.17■■□□□ 1.62
PDLIM5-212ENST00000509333 MIA2Q96PC5 1412 aa25.17■■□□□ 1.62
PDLIM5-212ENST00000509333 AGLP35573 1532 aa25.17■■□□□ 1.62
PDLIM5-212ENST00000509333 CAMSAP2Q08AD1 1489 aa25.16■■□□□ 1.62
PDLIM5-212ENST00000509333 PLPPR3Q6T4P5 718 aa25.16■■□□□ 1.62
PDLIM5-212ENST00000509333 ATP7AQ04656 1500 aa25.14■■□□□ 1.62
PDLIM5-212ENST00000509333 CEBPAP49715 358 aaPredicted RBP25.14■■□□□ 1.62
PDLIM5-212ENST00000509333 A2MP01023 1474 aa25.11■■□□□ 1.61
PDLIM5-212ENST00000509333 CCDC141Q6ZP82 1450 aa25.1■■□□□ 1.61
PDLIM5-212ENST00000509333 DHX29Q7Z478 1369 aaKnown RBP25.1■■□□□ 1.61
PDLIM5-212ENST00000509333 RIMS1Q86UR5 1692 aaKnown RBP25.09■■□□□ 1.61
PDLIM5-212ENST00000509333 INO80Q9ULG1 1556 aaPredicted RBP25.09■■□□□ 1.61
PDLIM5-212ENST00000509333 ESF1Q9H501 851 aaKnown RBP25.08■■□□□ 1.61
PDLIM5-212ENST00000509333 GGT6Q6P531 493 aa25.07■■□□□ 1.6
PDLIM5-212ENST00000509333 ARHGEF5Q12774 1597 aa25.06■■□□□ 1.6
PDLIM5-212ENST00000509333 PPP6R1Q9UPN7 881 aa25.05■■□□□ 1.6
PDLIM5-212ENST00000509333 KIF3BO15066 747 aa25.02■■□□□ 1.6
PDLIM5-212ENST00000509333 FER1L4A9Z1Z3 1794 aa25.01■■□□□ 1.59
PDLIM5-212ENST00000509333 FGD6Q6ZV73 1430 aa25.01■■□□□ 1.59
PDLIM5-212ENST00000509333 PLXNC1O60486 1568 aa24.99■■□□□ 1.59
PDLIM5-212ENST00000509333 PPARGC1BQ86YN6 1023 aaKnown RBP24.99■■□□□ 1.59
PDLIM5-212ENST00000509333 ABCC5O15440 1437 aa24.98■■□□□ 1.59
PDLIM5-212ENST00000509333 ZMYM3Q14202 1370 aa24.98■■□□□ 1.59
PDLIM5-212ENST00000509333 CNTLNQ9NXG0 1405 aa24.96■■□□□ 1.59
PDLIM5-212ENST00000509333 ADGBQ8N7X0 1667 aa24.96■■□□□ 1.59
PDLIM5-212ENST00000509333 TCOF1Q13428 1488 aaKnown RBP24.96■■□□□ 1.59
PDLIM5-212ENST00000509333 SETD1BQ9UPS6 1966 aaKnown RBP24.94■■□□□ 1.58
PDLIM5-212ENST00000509333 PTPN23Q9H3S7 1636 aa24.94■■□□□ 1.58
PDLIM5-212ENST00000509333 HSPA2P54652 639 aa24.94■■□□□ 1.58
PDLIM5-212ENST00000509333 LMTK3Q96Q04 1460 aa24.93■■□□□ 1.58
PDLIM5-212ENST00000509333 FAM50AQ14320 339 aaKnown RBP24.92■■□□□ 1.58
PDLIM5-212ENST00000509333 RRP7BPQ9NSQ0 103 aa24.92■■□□□ 1.58
PDLIM5-212ENST00000509333 MAST1Q9Y2H9 1570 aa24.92■■□□□ 1.58
PDLIM5-212ENST00000509333 CHIC2Q9UKJ5 165 aa24.91■■□□□ 1.58
PDLIM5-212ENST00000509333 DAPK1P53355 1430 aa24.88■■□□□ 1.57
PDLIM5-212ENST00000509333 WASHC2CQ9Y4E1 1318 aa24.86■■□□□ 1.57
PDLIM5-212ENST00000509333 C3P01024 1663 aa24.85■■□□□ 1.57
PDLIM5-212ENST00000509333 SHANK2Q9UPX8 1470 aa24.83■■□□□ 1.56
PDLIM5-212ENST00000509333 KIF15Q9NS87 1388 aa24.82■■□□□ 1.56
PDLIM5-212ENST00000509333 NCOA1Q15788 1441 aa24.81■■□□□ 1.56
PDLIM5-212ENST00000509333 ANKRD30AQ9BXX3 1397 aa24.8■■□□□ 1.56
PDLIM5-212ENST00000509333 NPATQ14207 1427 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms