RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 NISCHQ9Y2I1 1504 aa39.35■■■■□ 3.89
PDLIM5-212ENST00000509333 CCDC180Q9P1Z9 1646 aa34.87■■■■□ 3.17
PDLIM5-212ENST00000509333 ABCC9O60706 1549 aa34.48■■■■□ 3.11
PDLIM5-212ENST00000509333 DCAF8L2P0C7V8 631 aa33.16■■■□□ 2.9
PDLIM5-212ENST00000509333 RB1CC1Q8TDY2 1594 aa33■■■□□ 2.87
PDLIM5-212ENST00000509333 NACADO15069 1562 aa32.96■■■□□ 2.87
PDLIM5-212ENST00000509333 MYO15BQ96JP2 1530 aa32.72■■■□□ 2.83
PDLIM5-212ENST00000509333 ZCCHC6Q5VYS8 1495 aaKnown RBP32.67■■■□□ 2.82
PDLIM5-212ENST00000509333 DCAF1Q9Y4B6 1507 aa32.51■■■□□ 2.8
PDLIM5-212ENST00000509333 PABPN1Q86U42 306 aaKnown RBP eCLIP32.35■■■□□ 2.77
PDLIM5-212ENST00000509333 UNC13AQ9UPW8 1703 aa32.17■■■□□ 2.74
PDLIM5-212ENST00000509333 BICRAQ9NZM4 1560 aa32.07■■■□□ 2.72
PDLIM5-212ENST00000509333 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
PDLIM5-212ENST00000509333 SCRIBQ14160 1630 aa31.86■■■□□ 2.69
PDLIM5-212ENST00000509333 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
PDLIM5-212ENST00000509333 EIF4G1Q04637 1599 aaKnown RBP31.19■■■□□ 2.58
PDLIM5-212ENST00000509333 CC2D2AQ9P2K1 1620 aa31.12■■■□□ 2.57
PDLIM5-212ENST00000509333 CECR2Q9BXF3 1484 aa31■■■□□ 2.55
PDLIM5-212ENST00000509333 NCAPD3P42695 1498 aa30.53■■■□□ 2.48
PDLIM5-212ENST00000509333 ATAD2BQ9ULI0 1458 aa30.49■■■□□ 2.47
PDLIM5-212ENST00000509333 SMARCA4P51532 1647 aa30.48■■■□□ 2.47
PDLIM5-212ENST00000509333 BAZ1AQ9NRL2 1556 aaPredicted RBP30.44■■■□□ 2.46
PDLIM5-212ENST00000509333 SMARCA2P51531 1590 aa30.33■■■□□ 2.45
PDLIM5-212ENST00000509333 MROH2BQ7Z745 1585 aa30.33■■■□□ 2.45
PDLIM5-212ENST00000509333 PEG3Q9GZU2 1588 aa30.21■■■□□ 2.43
PDLIM5-212ENST00000509333 HMGXB3Q12766 1538 aa30.19■■■□□ 2.42
PDLIM5-212ENST00000509333 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
PDLIM5-212ENST00000509333 RSF1Q96T23 1441 aaPredicted RBP29.98■■■□□ 2.39
PDLIM5-212ENST00000509333 WIZO95785 1651 aa29.94■■■□□ 2.38
PDLIM5-212ENST00000509333 NESP48681 1621 aa29.8■■■□□ 2.36
PDLIM5-212ENST00000509333 ERCC6Q03468 1493 aa29.68■■■□□ 2.34
PDLIM5-212ENST00000509333 CADPSQ9ULU8 1353 aa29.64■■■□□ 2.34
PDLIM5-212ENST00000509333 LAMC3Q9Y6N6 1575 aa29.6■■■□□ 2.33
PDLIM5-212ENST00000509333 TOP2AP11388 1531 aaKnown RBP29.58■■■□□ 2.33
PDLIM5-212ENST00000509333 PDS5BQ9NTI5 1447 aa29.52■■■□□ 2.32
PDLIM5-212ENST00000509333 CUX2O14529 1486 aa29.42■■■□□ 2.3
PDLIM5-212ENST00000509333 CCDC88BA6NC98 1476 aa29.37■■■□□ 2.29
PDLIM5-212ENST00000509333 CFTRP13569 1480 aa29.37■■■□□ 2.29
PDLIM5-212ENST00000509333 KIF21AQ7Z4S6 1674 aa29.28■■■□□ 2.28
PDLIM5-212ENST00000509333 THOC2Q8NI27 1593 aaKnown RBP29.23■■■□□ 2.27
PDLIM5-212ENST00000509333 FANCD2Q9BXW9 1451 aa29.22■■■□□ 2.27
PDLIM5-212ENST00000509333 SUPT5HO00267 1087 aaKnown RBP29.19■■■□□ 2.26
PDLIM5-212ENST00000509333 MRC2Q9UBG0 1479 aa29.15■■■□□ 2.26
PDLIM5-212ENST00000509333 CEP164Q9UPV0 1460 aa29.14■■■□□ 2.26
PDLIM5-212ENST00000509333 WDR62O43379 1518 aa29.03■■■□□ 2.24
PDLIM5-212ENST00000509333 DNAJC5Q9H3Z4 198 aa28.98■■■□□ 2.23
PDLIM5-212ENST00000509333 URB2Q14146 1524 aaKnown RBP28.94■■■□□ 2.22
PDLIM5-212ENST00000509333 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
PDLIM5-212ENST00000509333 ABCC8Q09428 1581 aa28.73■■■□□ 2.19
PDLIM5-212ENST00000509333 TOPBP1Q92547 1522 aa28.73■■■□□ 2.19
PDLIM5-212ENST00000509333 DNMBPQ6XZF7 1577 aa28.6■■■□□ 2.17
PDLIM5-212ENST00000509333 IFT140Q96RY7 1462 aa28.59■■■□□ 2.17
PDLIM5-212ENST00000509333 ZNF608Q9ULD9 1512 aaPredicted RBP28.5■■■□□ 2.15
PDLIM5-212ENST00000509333 POLA1P09884 1462 aaPredicted RBP28.46■■■□□ 2.15
PDLIM5-212ENST00000509333 SOGA1O94964 1423 aa28.44■■■□□ 2.14
PDLIM5-212ENST00000509333 CUX1P39880 1505 aa28.43■■■□□ 2.14
PDLIM5-212ENST00000509333 RAD54L2Q9Y4B4 1467 aa28.41■■■□□ 2.14
PDLIM5-212ENST00000509333 OSCARQ8IYS5 282 aa28.39■■■□□ 2.14
PDLIM5-212ENST00000509333 TARBP1Q13395 1621 aaKnown RBP28.38■■■□□ 2.13
PDLIM5-212ENST00000509333 AQRO60306 1485 aaKnown RBP eCLIP28.38■■■□□ 2.13
PDLIM5-212ENST00000509333 FGD5Q6ZNL6 1462 aa28.36■■■□□ 2.13
PDLIM5-212ENST00000509333 TDRD9Q8NDG6 1382 aaKnown RBP28.33■■■□□ 2.13
PDLIM5-212ENST00000509333 EIF4G3O43432 1585 aaKnown RBP28.22■■■□□ 2.11
PDLIM5-212ENST00000509333 WRNQ14191 1432 aaPredicted RBP eCLIP28.22■■■□□ 2.11
PDLIM5-212ENST00000509333 FBLN2P98095 1184 aa28.12■■■□□ 2.09
PDLIM5-212ENST00000509333 TOP2BQ02880 1626 aa28.1■■■□□ 2.09
PDLIM5-212ENST00000509333 ABCA10Q8WWZ4 1543 aa28.09■■■□□ 2.09
PDLIM5-212ENST00000509333 SYNJ1O43426 1573 aa28.08■■■□□ 2.09
PDLIM5-212ENST00000509333 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
PDLIM5-212ENST00000509333 BIVM-ERCC5R4GMW8 1640 aa28.04■■■□□ 2.08
PDLIM5-212ENST00000509333 GRIN2BQ13224 1484 aa28.04■■■□□ 2.08
PDLIM5-212ENST00000509333 GAPVD1Q14C86 1478 aa28.04■■■□□ 2.08
PDLIM5-212ENST00000509333 CHMP7Q8WUX9 453 aaPredicted RBP28.02■■■□□ 2.08
PDLIM5-212ENST00000509333 SNAPC4Q5SXM2 1469 aa27.99■■■□□ 2.07
PDLIM5-212ENST00000509333 MAGI1Q96QZ7 1491 aaPredicted RBP27.95■■■□□ 2.06
PDLIM5-212ENST00000509333 ABCA5Q8WWZ7 1642 aa27.89■■■□□ 2.06
PDLIM5-212ENST00000509333 CHD1O14646 1710 aa27.89■■■□□ 2.05
PDLIM5-212ENST00000509333 TRIM41Q8WV44 630 aa27.87■■■□□ 2.05
PDLIM5-212ENST00000509333 SYNJ2O15056 1496 aa27.87■■■□□ 2.05
PDLIM5-212ENST00000509333 PBRM1Q86U86 1689 aa27.8■■■□□ 2.04
PDLIM5-212ENST00000509333 ARHGEF11O15085 1522 aa27.72■■■□□ 2.03
PDLIM5-212ENST00000509333 FHAD1B1AJZ9 1412 aa27.72■■■□□ 2.03
PDLIM5-212ENST00000509333 ERICH3Q5RHP9 1530 aa27.72■■■□□ 2.03
PDLIM5-212ENST00000509333 RIMBP3CA6NJZ7 1639 aa27.71■■■□□ 2.03
PDLIM5-212ENST00000509333 RIMBP3BA6NNM3 1639 aa27.71■■■□□ 2.03
PDLIM5-212ENST00000509333 RIMBP3Q9UFD9 1639 aa27.71■■■□□ 2.03
PDLIM5-212ENST00000509333 IGF1RP08069 1367 aa27.7■■■□□ 2.02
PDLIM5-212ENST00000509333 CYB5RLQ6IPT4 315 aa27.69■■■□□ 2.02
PDLIM5-212ENST00000509333 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
PDLIM5-212ENST00000509333 GRIN2AQ12879 1464 aa27.66■■■□□ 2.02
PDLIM5-212ENST00000509333 KIF27Q86VH2 1401 aa27.66■■■□□ 2.02
PDLIM5-212ENST00000509333 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
PDLIM5-212ENST00000509333 AEBP2Q6ZN18 517 aaPredicted RBP27.61■■■□□ 2.01
PDLIM5-212ENST00000509333 NUP160Q12769 1436 aa27.58■■■□□ 2.01
PDLIM5-212ENST00000509333 ARAP1Q96P48 1450 aa27.51■■□□□ 1.99
PDLIM5-212ENST00000509333 CEP170Q5SW79 1584 aa27.49■■□□□ 1.99
PDLIM5-212ENST00000509333 JPH4Q96JJ6 628 aa27.48■■□□□ 1.99
PDLIM5-212ENST00000509333 CARMIL1Q5VZK9 1371 aa27.48■■□□□ 1.99
PDLIM5-212ENST00000509333 RUSC2Q8N2Y8 1516 aa27.42■■□□□ 1.98
PDLIM5-212ENST00000509333 ERCC6L2Q5T890 1561 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms