RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 ABCC5O15440 1437 aa18.08■□□□□ 0.49
PTPN7-217ENST00000495688 ANKRD30BQ9BXX2 1392 aa18.08■□□□□ 0.48
PTPN7-217ENST00000495688 RBM19Q9Y4C8 960 aaKnown RBP18.07■□□□□ 0.48
PTPN7-217ENST00000495688 MRC2Q9UBG0 1479 aa18.07■□□□□ 0.48
PTPN7-217ENST00000495688 CNTLNQ9NXG0 1405 aa18.07■□□□□ 0.48
PTPN7-217ENST00000495688 DISP1Q96F81 1524 aa18.06■□□□□ 0.48
PTPN7-217ENST00000495688 SLC4A1APQ9BWU0 796 aaKnown RBP18.06■□□□□ 0.48
PTPN7-217ENST00000495688 NUP153P49790 1475 aaKnown RBP18.06■□□□□ 0.48
PTPN7-217ENST00000495688 CCDC7Q96M83 1385 aa18.05■□□□□ 0.48
PTPN7-217ENST00000495688 ANP32EQ9BTT0 268 aa18.05■□□□□ 0.48
PTPN7-217ENST00000495688 RPRD2Q5VT52 1461 aaKnown RBP18.04■□□□□ 0.48
PTPN7-217ENST00000495688 NCOA1Q15788 1441 aa18.04■□□□□ 0.48
PTPN7-217ENST00000495688 KIAA0556O60303 1618 aa18.03■□□□□ 0.48
PTPN7-217ENST00000495688 PRKRIP1Q9H875 184 aaPredicted RBP18.03■□□□□ 0.48
PTPN7-217ENST00000495688 ROCK1Q13464 1354 aa18.03■□□□□ 0.48
PTPN7-217ENST00000495688 FAM9BQ8IZU0 186 aa18.03■□□□□ 0.48
PTPN7-217ENST00000495688 DNMT1P26358 1616 aaKnown RBP18.03■□□□□ 0.48
PTPN7-217ENST00000495688 TEX14Q8IWB6 1497 aa18.02■□□□□ 0.48
PTPN7-217ENST00000495688 KIAA0586Q9BVV6 1533 aa18.01■□□□□ 0.47
PTPN7-217ENST00000495688 PRG4Q92954 1404 aaPredicted RBP18■□□□□ 0.47
PTPN7-217ENST00000495688 KIF7Q2M1P5 1343 aa17.98■□□□□ 0.47
PTPN7-217ENST00000495688 MRS2Q9HD23 443 aa17.98■□□□□ 0.47
PTPN7-217ENST00000495688 RAPGEF6Q8TEU7 1601 aa17.98■□□□□ 0.47
PTPN7-217ENST00000495688 ZNF777Q9ULD5 760 aaPredicted RBP17.98■□□□□ 0.47
PTPN7-217ENST00000495688 IFT140Q96RY7 1462 aa17.98■□□□□ 0.47
PTPN7-217ENST00000495688 CNGB1Q14028 1251 aaPredicted RBP17.97■□□□□ 0.47
PTPN7-217ENST00000495688 CDK11AQ9UQ88 783 aaPredicted RBP17.97■□□□□ 0.47
PTPN7-217ENST00000495688 SPATA31E1Q6ZUB1 1445 aa17.96■□□□□ 0.47
PTPN7-217ENST00000495688 CFDP1Q9UEE9 299 aaPredicted RBP17.96■□□□□ 0.47
PTPN7-217ENST00000495688 GRIN2AQ12879 1464 aa17.96■□□□□ 0.47
PTPN7-217ENST00000495688 PZPP20742 1482 aa17.94■□□□□ 0.46
PTPN7-217ENST00000495688 PLB1Q6P1J6 1458 aa17.94■□□□□ 0.46
PTPN7-217ENST00000495688 ZNF326Q5BKZ1 582 aaKnown RBP17.94■□□□□ 0.46
PTPN7-217ENST00000495688 CAMSAP2Q08AD1 1489 aa17.93■□□□□ 0.46
PTPN7-217ENST00000495688 TROQ12816 1431 aaPredicted RBP17.92■□□□□ 0.46
PTPN7-217ENST00000495688 FBLN2P98095 1184 aa17.91■□□□□ 0.46
PTPN7-217ENST00000495688 EIF4G3O43432 1585 aaKnown RBP17.91■□□□□ 0.46
PTPN7-217ENST00000495688 POLR3GLQ9BT43 218 aa17.91■□□□□ 0.46
PTPN7-217ENST00000495688 KIF14Q15058 1648 aa17.9■□□□□ 0.46
PTPN7-217ENST00000495688 GPATCH8Q9UKJ3 1502 aaKnown RBP17.9■□□□□ 0.46
PTPN7-217ENST00000495688 PKD2Q13563 968 aa17.88■□□□□ 0.45
PTPN7-217ENST00000495688 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
PTPN7-217ENST00000495688 ZBED9Q6R2W3 1325 aa17.86■□□□□ 0.45
PTPN7-217ENST00000495688 MSH5O43196 834 aa17.85■□□□□ 0.45
PTPN7-217ENST00000495688 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
PTPN7-217ENST00000495688 SENP3-EIF4A1A0A087X0R7 540 aa17.85■□□□□ 0.45
PTPN7-217ENST00000495688 KIAA1107Q9UPP5 1409 aa17.85■□□□□ 0.45
PTPN7-217ENST00000495688 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
PTPN7-217ENST00000495688 USP47Q96K76 1375 aa17.84■□□□□ 0.45
PTPN7-217ENST00000495688 BCORL1Q5H9F3 1711 aa17.83■□□□□ 0.45
PTPN7-217ENST00000495688 MBD5Q9P267 1494 aa17.83■□□□□ 0.45
PTPN7-217ENST00000495688 B4GALNT3Q6L9W6 998 aa17.83■□□□□ 0.44
PTPN7-217ENST00000495688 ITSN2Q9NZM3 1697 aa17.83■□□□□ 0.44
PTPN7-217ENST00000495688 DHX29Q7Z478 1369 aaKnown RBP17.82■□□□□ 0.44
PTPN7-217ENST00000495688 PPP4R2Q9NY27 417 aa17.82■□□□□ 0.44
PTPN7-217ENST00000495688 ADGBQ8N7X0 1667 aa17.82■□□□□ 0.44
PTPN7-217ENST00000495688 JPH4Q96JJ6 628 aa17.81■□□□□ 0.44
PTPN7-217ENST00000495688 ANKRD50Q9ULJ7 1429 aa17.8■□□□□ 0.44
PTPN7-217ENST00000495688 ANKRD30AQ9BXX3 1397 aa17.8■□□□□ 0.44
PTPN7-217ENST00000495688 ADGRL2O95490 1459 aa17.8■□□□□ 0.44
PTPN7-217ENST00000495688 CROCC2H7BZ55 1655 aa17.79■□□□□ 0.44
PTPN7-217ENST00000495688 SYNJ2O15056 1496 aa17.78■□□□□ 0.44
PTPN7-217ENST00000495688 NUP155O75694 1391 aa17.78■□□□□ 0.44
PTPN7-217ENST00000495688 MAGI1Q96QZ7 1491 aaPredicted RBP17.77■□□□□ 0.44
PTPN7-217ENST00000495688 ERICH6BQ5W0A0 696 aa17.77■□□□□ 0.44
PTPN7-217ENST00000495688 ADCY10Q96PN6 1610 aa17.77■□□□□ 0.44
PTPN7-217ENST00000495688 ERCC6Q03468 1493 aa17.76■□□□□ 0.43
PTPN7-217ENST00000495688 KDM2AQ9Y2K7 1162 aa17.76■□□□□ 0.43
PTPN7-217ENST00000495688 PLEKHD1A6NEE1 506 aa17.75■□□□□ 0.43
PTPN7-217ENST00000495688 CARMIL2Q6F5E8 1435 aa17.75■□□□□ 0.43
PTPN7-217ENST00000495688 KDM5CP41229 1560 aa17.75■□□□□ 0.43
PTPN7-217ENST00000495688 CDC42BPAQ5VT25 1732 aa17.74■□□□□ 0.43
PTPN7-217ENST00000495688 CARD11Q9BXL7 1154 aa17.74■□□□□ 0.43
PTPN7-217ENST00000495688 C9orf84Q5VXU9 1444 aa17.73■□□□□ 0.43
PTPN7-217ENST00000495688 HNRNPMP52272 730 aaKnown RBP eCLIP17.73■□□□□ 0.43
PTPN7-217ENST00000495688 FANCIQ9NVI1 1328 aa17.72■□□□□ 0.43
PTPN7-217ENST00000495688 ATP10BO94823 1461 aa17.71■□□□□ 0.43
PTPN7-217ENST00000495688 ABCC10Q5T3U5 1492 aa17.7■□□□□ 0.42
PTPN7-217ENST00000495688 NUP160Q12769 1436 aa17.7■□□□□ 0.42
PTPN7-217ENST00000495688 ST20-MTHFSA0A0A6YYL1 179 aa17.7■□□□□ 0.42
PTPN7-217ENST00000495688 TSPY4P0CV99 314 aa17.69■□□□□ 0.42
PTPN7-217ENST00000495688 TSPY10P0CW01 314 aa17.69■□□□□ 0.42
PTPN7-217ENST00000495688 DCAF11Q8TEB1 546 aa17.69■□□□□ 0.42
PTPN7-217ENST00000495688 RALGAPBQ86X10 1494 aa17.68■□□□□ 0.42
PTPN7-217ENST00000495688 UHRF1BP1Q6BDS2 1440 aa17.68■□□□□ 0.42
PTPN7-217ENST00000495688 SMG6Q86US8 1419 aaKnown RBP17.68■□□□□ 0.42
PTPN7-217ENST00000495688 PNISRQ8TF01 805 aaKnown RBP17.67■□□□□ 0.42
PTPN7-217ENST00000495688 ABCA8O94911 1581 aa17.67■□□□□ 0.42
PTPN7-217ENST00000495688 KIF15Q9NS87 1388 aa17.67■□□□□ 0.42
PTPN7-217ENST00000495688 TMC1Q8TDI8 760 aa17.66■□□□□ 0.42
PTPN7-217ENST00000495688 NUDCQ9Y266 331 aa17.66■□□□□ 0.42
PTPN7-217ENST00000495688 ARID4BQ4LE39 1312 aaPredicted RBP17.65■□□□□ 0.42
PTPN7-217ENST00000495688 SHANK2Q9UPX8 1470 aa17.65■□□□□ 0.42
PTPN7-217ENST00000495688 ARHGEF12Q9NZN5 1544 aa17.61■□□□□ 0.41
PTPN7-217ENST00000495688 ROCK2O75116 1388 aaKnown RBP17.61■□□□□ 0.41
PTPN7-217ENST00000495688 KDM5DQ9BY66 1539 aa17.6■□□□□ 0.41
PTPN7-217ENST00000495688 RGL3Q3MIN7 710 aa17.6■□□□□ 0.41
PTPN7-217ENST00000495688 PTPRGP23470 1445 aa17.6■□□□□ 0.41
PTPN7-217ENST00000495688 RNF123Q5XPI4 1314 aa17.59■□□□□ 0.41
PTPN7-217ENST00000495688 ERICH6Q7L0X2 663 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms