RNA–Protein interactions for RNA: ENST00000494132.1

ATG4B-224, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 828 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-224ENST00000494132 PREX2Q70Z35 1606 aa23.55■■□□□ 1.36
ATG4B-224ENST00000494132 SCAPERQ9BY12 1400 aa23.5■■□□□ 1.35
ATG4B-224ENST00000494132 EFCAB2Q5VUJ9 269 aa23.49■■□□□ 1.35
ATG4B-224ENST00000494132 MTUS2Q5JR59 1369 aa23.46■■□□□ 1.35
ATG4B-224ENST00000494132 ARHGEF40Q8TER5 1519 aa23.46■■□□□ 1.35
ATG4B-224ENST00000494132 POGZQ7Z3K3 1410 aa23.45■■□□□ 1.34
ATG4B-224ENST00000494132 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.34
ATG4B-224ENST00000494132 ZMYM4Q5VZL5 1548 aa23.44■■□□□ 1.34
ATG4B-224ENST00000494132 EHBP1L1Q8N3D4 1523 aa23.43■■□□□ 1.34
ATG4B-224ENST00000494132 ITSN2Q9NZM3 1697 aa23.42■■□□□ 1.34
ATG4B-224ENST00000494132 TIAM1Q13009 1591 aa23.41■■□□□ 1.34
ATG4B-224ENST00000494132 ZFYVE16Q7Z3T8 1539 aa23.41■■□□□ 1.34
ATG4B-224ENST00000494132 YEATS2Q9ULM3 1422 aa23.41■■□□□ 1.34
ATG4B-224ENST00000494132 ABCC1P33527 1531 aa23.4■■□□□ 1.34
ATG4B-224ENST00000494132 SIGLEC1Q9BZZ2 1709 aa23.4■■□□□ 1.34
ATG4B-224ENST00000494132 GPATCH8Q9UKJ3 1502 aaKnown RBP23.39■■□□□ 1.34
ATG4B-224ENST00000494132 SAMD9LQ8IVG5 1584 aa23.39■■□□□ 1.33
ATG4B-224ENST00000494132 ZNF777Q9ULD5 760 aaPredicted RBP23.38■■□□□ 1.33
ATG4B-224ENST00000494132 ARHGEF12Q9NZN5 1544 aa23.38■■□□□ 1.33
ATG4B-224ENST00000494132 SUPT6HQ7KZ85 1726 aaKnown RBP23.36■■□□□ 1.33
ATG4B-224ENST00000494132 AFAP1Q8N556 730 aa23.35■■□□□ 1.33
ATG4B-224ENST00000494132 BCORL1Q5H9F3 1711 aa23.35■■□□□ 1.33
ATG4B-224ENST00000494132 CCNB3Q8WWL7 1395 aa23.35■■□□□ 1.33
ATG4B-224ENST00000494132 ZNF518AQ6AHZ1 1483 aa23.35■■□□□ 1.33
ATG4B-224ENST00000494132 KDM5CP41229 1560 aa23.35■■□□□ 1.33
ATG4B-224ENST00000494132 ARID4BQ4LE39 1312 aaPredicted RBP23.34■■□□□ 1.33
ATG4B-224ENST00000494132 SYCP2Q9BX26 1530 aa23.33■■□□□ 1.32
ATG4B-224ENST00000494132 TRAPPC8Q9Y2L5 1435 aa23.33■■□□□ 1.32
ATG4B-224ENST00000494132 ADAMTSL3P82987 1691 aa23.32■■□□□ 1.32
ATG4B-224ENST00000494132 HECW2Q9P2P5 1572 aa23.32■■□□□ 1.32
ATG4B-224ENST00000494132 MAGI2Q86UL8 1455 aa23.32■■□□□ 1.32
ATG4B-224ENST00000494132 MYT1LQ9UL68 1186 aa23.3■■□□□ 1.32
ATG4B-224ENST00000494132 NCOA2Q15596 1464 aa23.3■■□□□ 1.32
ATG4B-224ENST00000494132 CFDP1Q9UEE9 299 aaPredicted RBP23.29■■□□□ 1.32
ATG4B-224ENST00000494132 MADDQ8WXG6 1647 aa23.29■■□□□ 1.32
ATG4B-224ENST00000494132 ABCA6Q8N139 1617 aa23.28■■□□□ 1.32
ATG4B-224ENST00000494132 LRRC9Q6ZRR7 1453 aa23.27■■□□□ 1.32
ATG4B-224ENST00000494132 DIP2CQ9Y2E4 1556 aa23.27■■□□□ 1.32
ATG4B-224ENST00000494132 KIDINS220Q9ULH0 1771 aa23.26■■□□□ 1.31
ATG4B-224ENST00000494132 RIMS1Q86UR5 1692 aaKnown RBP23.25■■□□□ 1.31
ATG4B-224ENST00000494132 HNRNPMP52272 730 aaKnown RBP eCLIP23.25■■□□□ 1.31
ATG4B-224ENST00000494132 ATP10AO60312 1499 aa23.24■■□□□ 1.31
ATG4B-224ENST00000494132 KANK4Q5T7N3 995 aaPredicted RBP23.24■■□□□ 1.31
ATG4B-224ENST00000494132 ZNF644Q9H582 1327 aaPredicted RBP23.23■■□□□ 1.31
ATG4B-224ENST00000494132 C9orf84Q5VXU9 1444 aa23.23■■□□□ 1.31
ATG4B-224ENST00000494132 MLECQ14165 292 aa23.22■■□□□ 1.31
ATG4B-224ENST00000494132 MLH3Q9UHC1 1453 aa23.21■■□□□ 1.31
ATG4B-224ENST00000494132 MAP3K1Q13233 1512 aa23.21■■□□□ 1.31
ATG4B-224ENST00000494132 FER1L4A9Z1Z3 1794 aa23.21■■□□□ 1.31
ATG4B-224ENST00000494132 PLEKHH2Q8IVE3 1493 aa23.18■■□□□ 1.3
ATG4B-224ENST00000494132 PTPRMP28827 1452 aa23.17■■□□□ 1.3
ATG4B-224ENST00000494132 KIAA1107Q9UPP5 1409 aa23.16■■□□□ 1.3
ATG4B-224ENST00000494132 CAMSAP2Q08AD1 1489 aa23.16■■□□□ 1.3
ATG4B-224ENST00000494132 INO80Q9ULG1 1556 aaPredicted RBP23.15■■□□□ 1.3
ATG4B-224ENST00000494132 ATP7AQ04656 1500 aa23.14■■□□□ 1.3
ATG4B-224ENST00000494132 APLP2Q06481 763 aa23.14■■□□□ 1.29
ATG4B-224ENST00000494132 PLPPR3Q6T4P5 718 aa23.14■■□□□ 1.29
ATG4B-224ENST00000494132 SPAG9O60271 1321 aaKnown RBP23.13■■□□□ 1.29
ATG4B-224ENST00000494132 REREQ9P2R6 1566 aa23.13■■□□□ 1.29
ATG4B-224ENST00000494132 MBD5Q9P267 1494 aa23.11■■□□□ 1.29
ATG4B-224ENST00000494132 MYOM3Q5VTT5 1437 aa23.06■■□□□ 1.28
ATG4B-224ENST00000494132 ADGBQ8N7X0 1667 aa23.06■■□□□ 1.28
ATG4B-224ENST00000494132 CCDC141Q6ZP82 1450 aa23.05■■□□□ 1.28
ATG4B-224ENST00000494132 AGLP35573 1532 aa23.04■■□□□ 1.28
ATG4B-224ENST00000494132 ARHGEF5Q12774 1597 aa23.02■■□□□ 1.28
ATG4B-224ENST00000494132 PLXNC1O60486 1568 aa23.01■■□□□ 1.27
ATG4B-224ENST00000494132 A2MP01023 1474 aa23■■□□□ 1.27
ATG4B-224ENST00000494132 PTPN23Q9H3S7 1636 aa22.98■■□□□ 1.27
ATG4B-224ENST00000494132 MIA2Q96PC5 1412 aa22.97■■□□□ 1.27
ATG4B-224ENST00000494132 C3P01024 1663 aa22.97■■□□□ 1.27
ATG4B-224ENST00000494132 CEBPAP49715 358 aaPredicted RBP22.96■■□□□ 1.27
ATG4B-224ENST00000494132 RTEL1-TNFRSF6BF6WH68 1400 aa22.96■■□□□ 1.27
ATG4B-224ENST00000494132 CLTCQ00610 1675 aaKnown RBP22.93■■□□□ 1.26
ATG4B-224ENST00000494132 CROCC2H7BZ55 1655 aa22.92■■□□□ 1.26
ATG4B-224ENST00000494132 RSPH4AQ5TD94 716 aa22.91■■□□□ 1.26
ATG4B-224ENST00000494132 LMTK3Q96Q04 1460 aa22.91■■□□□ 1.26
ATG4B-224ENST00000494132 FGD6Q6ZV73 1430 aa22.91■■□□□ 1.26
ATG4B-224ENST00000494132 MAST1Q9Y2H9 1570 aa22.9■■□□□ 1.26
ATG4B-224ENST00000494132 ESF1Q9H501 851 aaKnown RBP22.9■■□□□ 1.26
ATG4B-224ENST00000494132 TSPY4P0CV99 314 aa22.89■■□□□ 1.25
ATG4B-224ENST00000494132 TSPY10P0CW01 314 aa22.89■■□□□ 1.25
ATG4B-224ENST00000494132 GGT6Q6P531 493 aa22.89■■□□□ 1.25
ATG4B-224ENST00000494132 PREX1Q8TCU6 1659 aa22.88■■□□□ 1.25
ATG4B-224ENST00000494132 PPARGC1BQ86YN6 1023 aaKnown RBP22.88■■□□□ 1.25
ATG4B-224ENST00000494132 DHX29Q7Z478 1369 aaKnown RBP22.87■■□□□ 1.25
ATG4B-224ENST00000494132 MROH2AA6NES4 1674 aa22.87■■□□□ 1.25
ATG4B-224ENST00000494132 DNMT1P26358 1616 aaKnown RBP22.86■■□□□ 1.25
ATG4B-224ENST00000494132 TCOF1Q13428 1488 aaKnown RBP22.85■■□□□ 1.25
ATG4B-224ENST00000494132 SETD1BQ9UPS6 1966 aaKnown RBP22.85■■□□□ 1.25
ATG4B-224ENST00000494132 ABCC5O15440 1437 aa22.83■■□□□ 1.25
ATG4B-224ENST00000494132 HSPA2P54652 639 aa22.83■■□□□ 1.25
ATG4B-224ENST00000494132 CNTLNQ9NXG0 1405 aa22.82■■□□□ 1.24
ATG4B-224ENST00000494132 KIF3BO15066 747 aa22.82■■□□□ 1.24
ATG4B-224ENST00000494132 DAPK1P53355 1430 aa22.82■■□□□ 1.24
ATG4B-224ENST00000494132 FAM50AQ14320 339 aaKnown RBP22.78■■□□□ 1.24
ATG4B-224ENST00000494132 SHANK2Q9UPX8 1470 aa22.78■■□□□ 1.24
ATG4B-224ENST00000494132 ZMYM3Q14202 1370 aa22.77■■□□□ 1.24
ATG4B-224ENST00000494132 EIF2AK4Q9P2K8 1649 aaKnown RBP22.75■■□□□ 1.23
ATG4B-224ENST00000494132 CHIC2Q9UKJ5 165 aa22.75■■□□□ 1.23
ATG4B-224ENST00000494132 RNF17Q9BXT8 1623 aaKnown RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms