RNA–Protein interactions for RNA: ENST00000494132.1

ATG4B-224, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 828 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-224ENST00000494132 NISCHQ9Y2I1 1504 aa36.05■■■■□ 3.36
ATG4B-224ENST00000494132 CCDC180Q9P1Z9 1646 aa32.16■■■□□ 2.74
ATG4B-224ENST00000494132 ABCC9O60706 1549 aa31.69■■■□□ 2.66
ATG4B-224ENST00000494132 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.45
ATG4B-224ENST00000494132 DCAF8L2P0C7V8 631 aa30.27■■■□□ 2.44
ATG4B-224ENST00000494132 NACADO15069 1562 aa30.21■■■□□ 2.43
ATG4B-224ENST00000494132 ZCCHC6Q5VYS8 1495 aaKnown RBP30■■■□□ 2.39
ATG4B-224ENST00000494132 MYO15BQ96JP2 1530 aa29.89■■■□□ 2.38
ATG4B-224ENST00000494132 UNC13AQ9UPW8 1703 aa29.84■■■□□ 2.37
ATG4B-224ENST00000494132 DCAF1Q9Y4B6 1507 aa29.74■■■□□ 2.35
ATG4B-224ENST00000494132 PABPN1Q86U42 306 aaKnown RBP eCLIP29.57■■■□□ 2.32
ATG4B-224ENST00000494132 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
ATG4B-224ENST00000494132 SCRIBQ14160 1630 aa29.43■■■□□ 2.3
ATG4B-224ENST00000494132 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
ATG4B-224ENST00000494132 SHROOM4Q9ULL8 1493 aa28.97■■■□□ 2.23
ATG4B-224ENST00000494132 EIF4G1Q04637 1599 aaKnown RBP28.69■■■□□ 2.18
ATG4B-224ENST00000494132 CC2D2AQ9P2K1 1620 aa28.65■■■□□ 2.18
ATG4B-224ENST00000494132 CECR2Q9BXF3 1484 aa28.44■■■□□ 2.14
ATG4B-224ENST00000494132 SMARCA4P51532 1647 aa28.07■■■□□ 2.08
ATG4B-224ENST00000494132 BAZ1AQ9NRL2 1556 aaPredicted RBP27.94■■■□□ 2.06
ATG4B-224ENST00000494132 ATAD2BQ9ULI0 1458 aa27.89■■■□□ 2.06
ATG4B-224ENST00000494132 NCAPD3P42695 1498 aa27.85■■■□□ 2.05
ATG4B-224ENST00000494132 SMARCA2P51531 1590 aa27.85■■■□□ 2.05
ATG4B-224ENST00000494132 MROH2BQ7Z745 1585 aa27.84■■■□□ 2.05
ATG4B-224ENST00000494132 HMGXB3Q12766 1538 aa27.74■■■□□ 2.03
ATG4B-224ENST00000494132 PEG3Q9GZU2 1588 aa27.71■■■□□ 2.03
ATG4B-224ENST00000494132 BAZ1BQ9UIG0 1483 aaKnown RBP27.68■■■□□ 2.02
ATG4B-224ENST00000494132 WIZO95785 1651 aa27.6■■■□□ 2.01
ATG4B-224ENST00000494132 RSF1Q96T23 1441 aaPredicted RBP27.4■■□□□ 1.98
ATG4B-224ENST00000494132 NESP48681 1621 aa27.39■■□□□ 1.98
ATG4B-224ENST00000494132 ERCC6Q03468 1493 aa27.28■■□□□ 1.96
ATG4B-224ENST00000494132 LAMC3Q9Y6N6 1575 aa27.2■■□□□ 1.94
ATG4B-224ENST00000494132 TOP2AP11388 1531 aaKnown RBP27.2■■□□□ 1.94
ATG4B-224ENST00000494132 KIF21AQ7Z4S6 1674 aa27.13■■□□□ 1.93
ATG4B-224ENST00000494132 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
ATG4B-224ENST00000494132 THOC2Q8NI27 1593 aaKnown RBP27■■□□□ 1.91
ATG4B-224ENST00000494132 CUX2O14529 1486 aa26.98■■□□□ 1.91
ATG4B-224ENST00000494132 PDS5BQ9NTI5 1447 aa26.97■■□□□ 1.91
ATG4B-224ENST00000494132 CCDC88BA6NC98 1476 aa26.87■■□□□ 1.89
ATG4B-224ENST00000494132 CFTRP13569 1480 aa26.87■■□□□ 1.89
ATG4B-224ENST00000494132 PRDM2Q13029 1718 aa26.82■■□□□ 1.88
ATG4B-224ENST00000494132 FANCD2Q9BXW9 1451 aa26.8■■□□□ 1.88
ATG4B-224ENST00000494132 CEP164Q9UPV0 1460 aa26.78■■□□□ 1.88
ATG4B-224ENST00000494132 MRC2Q9UBG0 1479 aa26.76■■□□□ 1.87
ATG4B-224ENST00000494132 WDR62O43379 1518 aa26.7■■□□□ 1.86
ATG4B-224ENST00000494132 SUPT5HO00267 1087 aaKnown RBP26.67■■□□□ 1.86
ATG4B-224ENST00000494132 URB2Q14146 1524 aaKnown RBP26.57■■□□□ 1.84
ATG4B-224ENST00000494132 DNAJC5Q9H3Z4 198 aa26.38■■□□□ 1.81
ATG4B-224ENST00000494132 TOPBP1Q92547 1522 aa26.36■■□□□ 1.81
ATG4B-224ENST00000494132 DNMBPQ6XZF7 1577 aa26.32■■□□□ 1.8
ATG4B-224ENST00000494132 ABCC8Q09428 1581 aa26.24■■□□□ 1.79
ATG4B-224ENST00000494132 IFT140Q96RY7 1462 aa26.18■■□□□ 1.78
ATG4B-224ENST00000494132 ZNF608Q9ULD9 1512 aaPredicted RBP26.17■■□□□ 1.78
ATG4B-224ENST00000494132 POLA1P09884 1462 aaPredicted RBP26.13■■□□□ 1.77
ATG4B-224ENST00000494132 CUX1P39880 1505 aa26.13■■□□□ 1.77
ATG4B-224ENST00000494132 TARBP1Q13395 1621 aaKnown RBP26.11■■□□□ 1.77
ATG4B-224ENST00000494132 EIF4G3O43432 1585 aaKnown RBP26.08■■□□□ 1.77
ATG4B-224ENST00000494132 FGD5Q6ZNL6 1462 aa26.06■■□□□ 1.76
ATG4B-224ENST00000494132 RAD54L2Q9Y4B4 1467 aa26.06■■□□□ 1.76
ATG4B-224ENST00000494132 AQRO60306 1485 aaKnown RBP eCLIP25.98■■□□□ 1.752e-11■■■■□ 24.6
ATG4B-224ENST00000494132 SOGA1O94964 1423 aa25.97■■□□□ 1.75
ATG4B-224ENST00000494132 WDR97A6NE52 1622 aa25.91■■□□□ 1.74
ATG4B-224ENST00000494132 TDRD9Q8NDG6 1382 aaKnown RBP25.9■■□□□ 1.74
ATG4B-224ENST00000494132 SYNJ1O43426 1573 aa25.88■■□□□ 1.73
ATG4B-224ENST00000494132 BIVM-ERCC5R4GMW8 1640 aa25.87■■□□□ 1.73
ATG4B-224ENST00000494132 CHD1O14646 1710 aa25.86■■□□□ 1.73
ATG4B-224ENST00000494132 WRNQ14191 1432 aaPredicted RBP eCLIP25.85■■□□□ 1.73
ATG4B-224ENST00000494132 TOP2BQ02880 1626 aa25.84■■□□□ 1.73
ATG4B-224ENST00000494132 OSCARQ8IYS5 282 aa25.83■■□□□ 1.73
ATG4B-224ENST00000494132 PBRM1Q86U86 1689 aa25.78■■□□□ 1.72
ATG4B-224ENST00000494132 SNAPC4Q5SXM2 1469 aa25.74■■□□□ 1.71
ATG4B-224ENST00000494132 ABCA10Q8WWZ4 1543 aa25.73■■□□□ 1.71
ATG4B-224ENST00000494132 FBLN2P98095 1184 aa25.72■■□□□ 1.71
ATG4B-224ENST00000494132 ABCA5Q8WWZ7 1642 aa25.72■■□□□ 1.71
ATG4B-224ENST00000494132 GRIN2BQ13224 1484 aa25.69■■□□□ 1.7
ATG4B-224ENST00000494132 GAPVD1Q14C86 1478 aa25.69■■□□□ 1.7
ATG4B-224ENST00000494132 MAGI1Q96QZ7 1491 aaPredicted RBP25.63■■□□□ 1.69
ATG4B-224ENST00000494132 RIMBP3CA6NJZ7 1639 aa25.57■■□□□ 1.68
ATG4B-224ENST00000494132 RIMBP3BA6NNM3 1639 aa25.57■■□□□ 1.68
ATG4B-224ENST00000494132 RIMBP3Q9UFD9 1639 aa25.57■■□□□ 1.68
ATG4B-224ENST00000494132 SYNJ2O15056 1496 aa25.55■■□□□ 1.68
ATG4B-224ENST00000494132 CHMP7Q8WUX9 453 aaPredicted RBP25.55■■□□□ 1.68
ATG4B-224ENST00000494132 TRIM41Q8WV44 630 aa25.54■■□□□ 1.68
ATG4B-224ENST00000494132 ARHGEF11O15085 1522 aa25.5■■□□□ 1.67
ATG4B-224ENST00000494132 ADAMTS12P58397 1594 aa25.49■■□□□ 1.67
ATG4B-224ENST00000494132 CLASP1Q7Z460 1538 aa25.45■■□□□ 1.66
ATG4B-224ENST00000494132 ERICH3Q5RHP9 1530 aa25.42■■□□□ 1.66
ATG4B-224ENST00000494132 GRIN2AQ12879 1464 aa25.39■■□□□ 1.65
ATG4B-224ENST00000494132 FHAD1B1AJZ9 1412 aa25.35■■□□□ 1.65
ATG4B-224ENST00000494132 CEP170Q5SW79 1584 aa25.33■■□□□ 1.65
ATG4B-224ENST00000494132 KIF27Q86VH2 1401 aa25.29■■□□□ 1.64
ATG4B-224ENST00000494132 ARAP1Q96P48 1450 aa25.28■■□□□ 1.64
ATG4B-224ENST00000494132 CYB5RLQ6IPT4 315 aa25.26■■□□□ 1.63
ATG4B-224ENST00000494132 NUP160Q12769 1436 aa25.25■■□□□ 1.63
ATG4B-224ENST00000494132 CUL7Q14999 1698 aa25.21■■□□□ 1.63
ATG4B-224ENST00000494132 IGF1RP08069 1367 aa25.2■■□□□ 1.63
ATG4B-224ENST00000494132 ERCC6L2Q5T890 1561 aa25.18■■□□□ 1.62
ATG4B-224ENST00000494132 RUSC2Q8N2Y8 1516 aa25.14■■□□□ 1.62
ATG4B-224ENST00000494132 SHROOM2Q13796 1616 aa25.14■■□□□ 1.61
ATG4B-224ENST00000494132 CARMIL1Q5VZK9 1371 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms