RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 PLCH2O75038 1416 aa13.26□□□□□ -0.29
HDAC6-234ENST00000493923 ARHGEF40Q8TER5 1519 aa13.26□□□□□ -0.29
HDAC6-234ENST00000493923 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
HDAC6-234ENST00000493923 BCORL1Q5H9F3 1711 aa13.25□□□□□ -0.29
HDAC6-234ENST00000493923 CFAP74Q9C0B2 1584 aa13.24□□□□□ -0.29
HDAC6-234ENST00000493923 MADDQ8WXG6 1647 aa13.24□□□□□ -0.29
HDAC6-234ENST00000493923 TROQ12816 1431 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-234ENST00000493923 SCAPERQ9BY12 1400 aa13.23□□□□□ -0.29
HDAC6-234ENST00000493923 MYO5CQ9NQX4 1742 aa13.23□□□□□ -0.29
HDAC6-234ENST00000493923 ZMYM4Q5VZL5 1548 aa13.23□□□□□ -0.29
HDAC6-234ENST00000493923 PTPRMP28827 1452 aa13.23□□□□□ -0.29
HDAC6-234ENST00000493923 POGZQ7Z3K3 1410 aa13.22□□□□□ -0.29
HDAC6-234ENST00000493923 CASKIN1Q8WXD9 1431 aa13.22□□□□□ -0.29
HDAC6-234ENST00000493923 ARID4BQ4LE39 1312 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-234ENST00000493923 ZFYVE16Q7Z3T8 1539 aa13.2□□□□□ -0.3
HDAC6-234ENST00000493923 CDC42BPBQ9Y5S2 1711 aa13.2□□□□□ -0.3
HDAC6-234ENST00000493923 CLIP1P30622 1438 aa13.19□□□□□ -0.3
HDAC6-234ENST00000493923 RIMS1Q86UR5 1692 aaKnown RBP13.18□□□□□ -0.3
HDAC6-234ENST00000493923 EFCAB2Q5VUJ9 269 aa13.18□□□□□ -0.3
HDAC6-234ENST00000493923 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
HDAC6-234ENST00000493923 CDK11AQ9UQ88 783 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-234ENST00000493923 ARHGAP5Q13017 1502 aa13.17□□□□□ -0.3
HDAC6-234ENST00000493923 MYT1Q01538 1121 aa13.16□□□□□ -0.3
HDAC6-234ENST00000493923 AFAP1Q8N556 730 aa13.16□□□□□ -0.3
HDAC6-234ENST00000493923 MAPK8IP2Q13387 824 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-234ENST00000493923 MLECQ14165 292 aa13.15□□□□□ -0.3
HDAC6-234ENST00000493923 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
HDAC6-234ENST00000493923 FYCO1Q9BQS8 1478 aa13.15□□□□□ -0.3
HDAC6-234ENST00000493923 PREX2Q70Z35 1606 aa13.14□□□□□ -0.31
HDAC6-234ENST00000493923 CDC42BPAQ5VT25 1732 aa13.14□□□□□ -0.31
HDAC6-234ENST00000493923 CCDC18Q5T9S5 1454 aa13.14□□□□□ -0.31
HDAC6-234ENST00000493923 MAGI2Q86UL8 1455 aa13.14□□□□□ -0.31
HDAC6-234ENST00000493923 TRAPPC8Q9Y2L5 1435 aa13.13□□□□□ -0.31
HDAC6-234ENST00000493923 KDM5CP41229 1560 aa13.13□□□□□ -0.31
HDAC6-234ENST00000493923 ATP10AO60312 1499 aa13.12□□□□□ -0.31
HDAC6-234ENST00000493923 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-234ENST00000493923 ABCC1P33527 1531 aa13.11□□□□□ -0.31
HDAC6-234ENST00000493923 ITSN2Q9NZM3 1697 aa13.11□□□□□ -0.31
HDAC6-234ENST00000493923 DIP2CQ9Y2E4 1556 aa13.11□□□□□ -0.31
HDAC6-234ENST00000493923 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
HDAC6-234ENST00000493923 ABCA6Q8N139 1617 aa13.1□□□□□ -0.31
HDAC6-234ENST00000493923 FER1L4A9Z1Z3 1794 aa13.1□□□□□ -0.31
HDAC6-234ENST00000493923 ZNF518AQ6AHZ1 1483 aa13.1□□□□□ -0.31
HDAC6-234ENST00000493923 C9orf84Q5VXU9 1444 aa13.09□□□□□ -0.31
HDAC6-234ENST00000493923 GPATCH8Q9UKJ3 1502 aaKnown RBP13.08□□□□□ -0.31
HDAC6-234ENST00000493923 SAMD9LQ8IVG5 1584 aa13.08□□□□□ -0.32
HDAC6-234ENST00000493923 KIDINS220Q9ULH0 1771 aa13.07□□□□□ -0.32
HDAC6-234ENST00000493923 CEP162Q5TB80 1403 aa13.07□□□□□ -0.32
HDAC6-234ENST00000493923 LOC105371045A0A1W2PR82 267 aa13.07□□□□□ -0.32
HDAC6-234ENST00000493923 HSPA2P54652 639 aa13.07□□□□□ -0.32
HDAC6-234ENST00000493923 CEBPAP49715 358 aaPredicted RBP13.06□□□□□ -0.32
HDAC6-234ENST00000493923 MLH3Q9UHC1 1453 aa13.05□□□□□ -0.32
HDAC6-234ENST00000493923 SYCP2Q9BX26 1530 aa13.05□□□□□ -0.32
HDAC6-234ENST00000493923 ZNF777Q9ULD5 760 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-234ENST00000493923 HNRNPMP52272 730 aaKnown RBP eCLIP13.04□□□□□ -0.32
HDAC6-234ENST00000493923 MYT1LQ9UL68 1186 aa13.03□□□□□ -0.32
HDAC6-234ENST00000493923 ZNF644Q9H582 1327 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-234ENST00000493923 TIAM1Q13009 1591 aa13.02□□□□□ -0.33
HDAC6-234ENST00000493923 REREQ9P2R6 1566 aa13.02□□□□□ -0.33
HDAC6-234ENST00000493923 MTUS2Q5JR59 1369 aa13□□□□□ -0.33
HDAC6-234ENST00000493923 AGLP35573 1532 aa12.99□□□□□ -0.33
HDAC6-234ENST00000493923 CCNB3Q8WWL7 1395 aa12.99□□□□□ -0.33
HDAC6-234ENST00000493923 CFDP1Q9UEE9 299 aaPredicted RBP12.98□□□□□ -0.33
HDAC6-234ENST00000493923 C3P01024 1663 aa12.98□□□□□ -0.33
HDAC6-234ENST00000493923 EHBP1L1Q8N3D4 1523 aa12.98□□□□□ -0.33
HDAC6-234ENST00000493923 INO80Q9ULG1 1556 aaPredicted RBP12.97□□□□□ -0.33
HDAC6-234ENST00000493923 SUPT6HQ7KZ85 1726 aaKnown RBP12.96□□□□□ -0.33
HDAC6-234ENST00000493923 SPAG9O60271 1321 aaKnown RBP12.96□□□□□ -0.33
HDAC6-234ENST00000493923 ATP7AQ04656 1500 aa12.96□□□□□ -0.33
HDAC6-234ENST00000493923 MBD5Q9P267 1494 aa12.96□□□□□ -0.34
HDAC6-234ENST00000493923 KIAA1107Q9UPP5 1409 aa12.96□□□□□ -0.34
HDAC6-234ENST00000493923 PREX1Q8TCU6 1659 aa12.96□□□□□ -0.34
HDAC6-234ENST00000493923 NCOA2Q15596 1464 aa12.94□□□□□ -0.34
HDAC6-234ENST00000493923 SETD1BQ9UPS6 1966 aaKnown RBP12.94□□□□□ -0.34
HDAC6-234ENST00000493923 PLXNC1O60486 1568 aa12.94□□□□□ -0.34
HDAC6-234ENST00000493923 STRCQ7RTU9 1775 aa12.93□□□□□ -0.34
HDAC6-234ENST00000493923 PLEKHH2Q8IVE3 1493 aa12.92□□□□□ -0.34
HDAC6-234ENST00000493923 VPS8Q8N3P4 1428 aa12.91□□□□□ -0.34
HDAC6-234ENST00000493923 KANK4Q5T7N3 995 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-234ENST00000493923 PPP4R3CPQ6ZMV5 832 aa12.91□□□□□ -0.34
HDAC6-234ENST00000493923 A2MP01023 1474 aa12.91□□□□□ -0.34
HDAC6-234ENST00000493923 CLTCQ00610 1675 aaKnown RBP12.89□□□□□ -0.35
HDAC6-234ENST00000493923 CAMSAP2Q08AD1 1489 aa12.89□□□□□ -0.35
HDAC6-234ENST00000493923 ADGBQ8N7X0 1667 aa12.89□□□□□ -0.35
HDAC6-234ENST00000493923 UHRF1BP1Q6BDS2 1440 aa12.88□□□□□ -0.35
HDAC6-234ENST00000493923 FBXO41Q8TF61 875 aa12.88□□□□□ -0.35
HDAC6-234ENST00000493923 LRRC9Q6ZRR7 1453 aa12.88□□□□□ -0.35
HDAC6-234ENST00000493923 MROH2AA6NES4 1674 aa12.86□□□□□ -0.35
HDAC6-234ENST00000493923 ZMYM3Q14202 1370 aa12.86□□□□□ -0.35
HDAC6-234ENST00000493923 GGT6Q6P531 493 aa12.86□□□□□ -0.35
HDAC6-234ENST00000493923 CNTLNQ9NXG0 1405 aa12.85□□□□□ -0.35
HDAC6-234ENST00000493923 CCDC141Q6ZP82 1450 aa12.85□□□□□ -0.35
HDAC6-234ENST00000493923 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
HDAC6-234ENST00000493923 RTEL1-TNFRSF6BF6WH68 1400 aa12.84□□□□□ -0.35
HDAC6-234ENST00000493923 DHX29Q7Z478 1369 aaKnown RBP12.83□□□□□ -0.36
HDAC6-234ENST00000493923 PTPRKQ15262 1439 aa12.83□□□□□ -0.36
HDAC6-234ENST00000493923 ARHGEF5Q12774 1597 aa12.81□□□□□ -0.36
HDAC6-234ENST00000493923 HRCP23327 699 aa12.81□□□□□ -0.36
HDAC6-234ENST00000493923 CERKQ8TCT0 537 aa12.81□□□□□ -0.36
HDAC6-234ENST00000493923 NPATQ14207 1427 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms