RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 CDC42BPAQ5VT25 1732 aa39.61■■■■□ 3.93
UPF3A-209ENST00000492270 SCAPERQ9BY12 1400 aa39.55■■■■□ 3.92
UPF3A-209ENST00000492270 ZMYM4Q5VZL5 1548 aa39.55■■■■□ 3.92
UPF3A-209ENST00000492270 EFCAB2Q5VUJ9 269 aa39.54■■■■□ 3.92
UPF3A-209ENST00000492270 ARHGEF40Q8TER5 1519 aa39.54■■■■□ 3.92
UPF3A-209ENST00000492270 POGZQ7Z3K3 1410 aa39.5■■■■□ 3.91
UPF3A-209ENST00000492270 MTUS2Q5JR59 1369 aa39.44■■■■□ 3.9
UPF3A-209ENST00000492270 ZFYVE16Q7Z3T8 1539 aa39.43■■■■□ 3.9
UPF3A-209ENST00000492270 VPS8Q8N3P4 1428 aa39.42■■■■□ 3.9
UPF3A-209ENST00000492270 EHBP1L1Q8N3D4 1523 aa39.42■■■■□ 3.9
UPF3A-209ENST00000492270 ITSN2Q9NZM3 1697 aa39.41■■■■□ 3.9
UPF3A-209ENST00000492270 ABCC1P33527 1531 aa39.4■■■■□ 3.9
UPF3A-209ENST00000492270 YEATS2Q9ULM3 1422 aa39.4■■■■□ 3.9
UPF3A-209ENST00000492270 SIGLEC1Q9BZZ2 1709 aa39.38■■■■□ 3.89
UPF3A-209ENST00000492270 GPATCH8Q9UKJ3 1502 aaKnown RBP39.37■■■■□ 3.89
UPF3A-209ENST00000492270 TIAM1Q13009 1591 aa39.36■■■■□ 3.89
UPF3A-209ENST00000492270 MAGI2Q86UL8 1455 aa39.36■■■■□ 3.89
UPF3A-209ENST00000492270 ZNF518AQ6AHZ1 1483 aa39.35■■■■□ 3.89
UPF3A-209ENST00000492270 KDM5CP41229 1560 aa39.34■■■■□ 3.89
UPF3A-209ENST00000492270 ARHGEF12Q9NZN5 1544 aa39.34■■■■□ 3.89
UPF3A-209ENST00000492270 BCORL1Q5H9F3 1711 aa39.34■■■■□ 3.89
UPF3A-209ENST00000492270 SAMD9LQ8IVG5 1584 aa39.33■■■■□ 3.89
UPF3A-209ENST00000492270 ADAMTSL3P82987 1691 aa39.32■■■■□ 3.89
UPF3A-209ENST00000492270 CCNB3Q8WWL7 1395 aa39.27■■■■□ 3.88
UPF3A-209ENST00000492270 HECW2Q9P2P5 1572 aa39.27■■■■□ 3.88
UPF3A-209ENST00000492270 AFAP1Q8N556 730 aa39.26■■■■□ 3.88
UPF3A-209ENST00000492270 SUPT6HQ7KZ85 1726 aaKnown RBP39.26■■■■□ 3.87
UPF3A-209ENST00000492270 TRAPPC8Q9Y2L5 1435 aa39.25■■■■□ 3.87
UPF3A-209ENST00000492270 ARID4BQ4LE39 1312 aaPredicted RBP39.24■■■■□ 3.87
UPF3A-209ENST00000492270 ZNF777Q9ULD5 760 aaPredicted RBP39.23■■■■□ 3.87
UPF3A-209ENST00000492270 SYCP2Q9BX26 1530 aa39.23■■■■□ 3.87
UPF3A-209ENST00000492270 MADDQ8WXG6 1647 aa39.21■■■■□ 3.87
UPF3A-209ENST00000492270 DIP2CQ9Y2E4 1556 aa39.18■■■■□ 3.86
UPF3A-209ENST00000492270 ABCA6Q8N139 1617 aa39.18■■■■□ 3.86
UPF3A-209ENST00000492270 ATP10AO60312 1499 aa39.17■■■■□ 3.86
UPF3A-209ENST00000492270 CFDP1Q9UEE9 299 aaPredicted RBP39.16■■■■□ 3.86
UPF3A-209ENST00000492270 NCOA2Q15596 1464 aa39.16■■■■□ 3.86
UPF3A-209ENST00000492270 KIDINS220Q9ULH0 1771 aa39.15■■■■□ 3.86
UPF3A-209ENST00000492270 LRRC9Q6ZRR7 1453 aa39.14■■■■□ 3.86
UPF3A-209ENST00000492270 C9orf84Q5VXU9 1444 aa39.14■■■■□ 3.86
UPF3A-209ENST00000492270 MLH3Q9UHC1 1453 aa39.13■■■■□ 3.85
UPF3A-209ENST00000492270 RIMS1Q86UR5 1692 aaKnown RBP39.12■■■■□ 3.85
UPF3A-209ENST00000492270 MAP3K1Q13233 1512 aa39.11■■■■□ 3.85
UPF3A-209ENST00000492270 MYT1LQ9UL68 1186 aa39.09■■■■□ 3.85
UPF3A-209ENST00000492270 PLEKHH2Q8IVE3 1493 aa39.07■■■■□ 3.85
UPF3A-209ENST00000492270 HNRNPMP52272 730 aaKnown RBP eCLIP39.07■■■■□ 3.85
UPF3A-209ENST00000492270 PTPRMP28827 1452 aa39.06■■■■□ 3.84
UPF3A-209ENST00000492270 KIAA1107Q9UPP5 1409 aa39.05■■■■□ 3.84
UPF3A-209ENST00000492270 FER1L4A9Z1Z3 1794 aa39.04■■■■□ 3.84
UPF3A-209ENST00000492270 ZNF644Q9H582 1327 aaPredicted RBP39.03■■■■□ 3.84
UPF3A-209ENST00000492270 REREQ9P2R6 1566 aa39.03■■■■□ 3.84
UPF3A-209ENST00000492270 KANK4Q5T7N3 995 aaPredicted RBP39.02■■■■□ 3.84
UPF3A-209ENST00000492270 INO80Q9ULG1 1556 aaPredicted RBP38.99■■■■□ 3.83
UPF3A-209ENST00000492270 MLECQ14165 292 aa38.99■■■■□ 3.83
UPF3A-209ENST00000492270 ATP7AQ04656 1500 aa38.96■■■■□ 3.83
UPF3A-209ENST00000492270 CAMSAP2Q08AD1 1489 aa38.94■■■■□ 3.82
UPF3A-209ENST00000492270 MBD5Q9P267 1494 aa38.93■■■■□ 3.82
UPF3A-209ENST00000492270 SPAG9O60271 1321 aaKnown RBP38.92■■■■□ 3.82
UPF3A-209ENST00000492270 AGLP35573 1532 aa38.87■■■■□ 3.81
UPF3A-209ENST00000492270 APLP2Q06481 763 aa38.82■■■■□ 3.8
UPF3A-209ENST00000492270 ADGBQ8N7X0 1667 aa38.81■■■■□ 3.8
UPF3A-209ENST00000492270 CCDC141Q6ZP82 1450 aa38.79■■■■□ 3.8
UPF3A-209ENST00000492270 MYOM3Q5VTT5 1437 aa38.79■■■■□ 3.8
UPF3A-209ENST00000492270 PLXNC1O60486 1568 aa38.78■■■■□ 3.8
UPF3A-209ENST00000492270 PLPPR3Q6T4P5 718 aa38.77■■■■□ 3.8
UPF3A-209ENST00000492270 ARHGEF5Q12774 1597 aa38.77■■■■□ 3.8
UPF3A-209ENST00000492270 A2MP01023 1474 aa38.73■■■■□ 3.79
UPF3A-209ENST00000492270 RTEL1-TNFRSF6BF6WH68 1400 aa38.7■■■■□ 3.79
UPF3A-209ENST00000492270 MIA2Q96PC5 1412 aa38.69■■■■□ 3.78
UPF3A-209ENST00000492270 C3P01024 1663 aa38.65■■■■□ 3.78
UPF3A-209ENST00000492270 PTPN23Q9H3S7 1636 aa38.63■■■■□ 3.77
UPF3A-209ENST00000492270 LMTK3Q96Q04 1460 aa38.62■■■■□ 3.77
UPF3A-209ENST00000492270 RSPH4AQ5TD94 716 aa38.61■■■■□ 3.77
UPF3A-209ENST00000492270 CEBPAP49715 358 aaPredicted RBP38.6■■■■□ 3.77
UPF3A-209ENST00000492270 MAST1Q9Y2H9 1570 aa38.58■■■■□ 3.77
UPF3A-209ENST00000492270 CLTCQ00610 1675 aaKnown RBP38.56■■■■□ 3.76
UPF3A-209ENST00000492270 MROH2AA6NES4 1674 aa38.55■■■■□ 3.76
UPF3A-209ENST00000492270 CROCC2H7BZ55 1655 aa38.55■■■■□ 3.76
UPF3A-209ENST00000492270 PREX1Q8TCU6 1659 aa38.55■■■■□ 3.76
UPF3A-209ENST00000492270 FGD6Q6ZV73 1430 aa38.53■■■■□ 3.76
UPF3A-209ENST00000492270 DHX29Q7Z478 1369 aaKnown RBP38.52■■■■□ 3.76
UPF3A-209ENST00000492270 TSPY4P0CV99 314 aa38.51■■■■□ 3.76
UPF3A-209ENST00000492270 TSPY10P0CW01 314 aa38.51■■■■□ 3.76
UPF3A-209ENST00000492270 ESF1Q9H501 851 aaKnown RBP38.51■■■■□ 3.76
UPF3A-209ENST00000492270 CNTLNQ9NXG0 1405 aa38.49■■■■□ 3.75
UPF3A-209ENST00000492270 TCOF1Q13428 1488 aaKnown RBP38.47■■■■□ 3.75
UPF3A-209ENST00000492270 GGT6Q6P531 493 aa38.46■■■■□ 3.75
UPF3A-209ENST00000492270 DNMT1P26358 1616 aaKnown RBP38.45■■■■□ 3.75
UPF3A-209ENST00000492270 SETD1BQ9UPS6 1966 aaKnown RBP38.44■■■■□ 3.74
UPF3A-209ENST00000492270 ABCC5O15440 1437 aa38.4■■■■□ 3.74
UPF3A-209ENST00000492270 HSPA2P54652 639 aa38.39■■■■□ 3.74
UPF3A-209ENST00000492270 SHANK2Q9UPX8 1470 aa38.38■■■■□ 3.73
UPF3A-209ENST00000492270 KIF3BO15066 747 aa38.37■■■■□ 3.73
UPF3A-209ENST00000492270 DAPK1P53355 1430 aa38.37■■■■□ 3.73
UPF3A-209ENST00000492270 ZMYM3Q14202 1370 aa38.35■■■■□ 3.73
UPF3A-209ENST00000492270 EIF2AK4Q9P2K8 1649 aaKnown RBP38.33■■■■□ 3.73
UPF3A-209ENST00000492270 RNF17Q9BXT8 1623 aaKnown RBP38.31■■■■□ 3.72
UPF3A-209ENST00000492270 UHRF1BP1Q6BDS2 1440 aa38.3■■■■□ 3.72
UPF3A-209ENST00000492270 KDM5DQ9BY66 1539 aa38.28■■■■□ 3.72
UPF3A-209ENST00000492270 DUOX2Q9NRD8 1548 aa38.28■■■■□ 3.72
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms