RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ADGRL1O94910 1474 aa25.67■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 DENND4BO75064 1496 aaPredicted RBP25.66■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 LRRC9Q6ZRR7 1453 aa25.66■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 FRMPD1Q5SYB0 1578 aa25.66■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 SUPT6HQ7KZ85 1726 aaKnown RBP25.65■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 GPATCH8Q9UKJ3 1502 aaKnown RBP25.64■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 RAPGEF3O95398 923 aa25.64■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 CCNB3Q8WWL7 1395 aa25.64■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 RICTORQ6R327 1708 aa25.63■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 APLP2Q06481 763 aa25.62■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 SCAPERQ9BY12 1400 aa25.62■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 NCOA2Q15596 1464 aa25.6■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 ITSN2Q9NZM3 1697 aa25.59■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 POGZQ7Z3K3 1410 aa25.59■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 KANK4Q5T7N3 995 aaPredicted RBP25.58■■□□□ 1.69
MSH5-SAPCD1-206ENST00000491552 ABCC1P33527 1531 aa25.58■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 ZMYM4Q5VZL5 1548 aa25.55■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 CFDP1Q9UEE9 299 aaPredicted RBP25.55■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 SAMD9LQ8IVG5 1584 aa25.55■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 ZNF777Q9ULD5 760 aaPredicted RBP25.52■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 ZNF518AQ6AHZ1 1483 aa25.52■■□□□ 1.68
MSH5-SAPCD1-206ENST00000491552 ARHGEF40Q8TER5 1519 aa25.49■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 ARHGEF12Q9NZN5 1544 aa25.49■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 KDM5CP41229 1560 aa25.48■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 PLEKHH2Q8IVE3 1493 aa25.48■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 SYCP2Q9BX26 1530 aa25.47■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 MAGI2Q86UL8 1455 aa25.47■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 ZFYVE16Q7Z3T8 1539 aa25.47■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 TRAPPC8Q9Y2L5 1435 aa25.46■■□□□ 1.67
MSH5-SAPCD1-206ENST00000491552 KIAA1107Q9UPP5 1409 aa25.45■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 AFAP1Q8N556 730 aa25.44■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 HECW2Q9P2P5 1572 aa25.43■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 YEATS2Q9ULM3 1422 aa25.42■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 MYOM3Q5VTT5 1437 aa25.41■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 ZNF644Q9H582 1327 aaPredicted RBP25.4■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 CAMSAP2Q08AD1 1489 aa25.4■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 HNRNPMP52272 730 aaKnown RBP eCLIP25.39■■□□□ 1.66
MSH5-SAPCD1-206ENST00000491552 MLH3Q9UHC1 1453 aa25.38■■□□□ 1.65
MSH5-SAPCD1-206ENST00000491552 MIA2Q96PC5 1412 aa25.37■■□□□ 1.65
MSH5-SAPCD1-206ENST00000491552 MBD5Q9P267 1494 aa25.35■■□□□ 1.65
MSH5-SAPCD1-206ENST00000491552 MYT1LQ9UL68 1186 aa25.35■■□□□ 1.65
MSH5-SAPCD1-206ENST00000491552 ATP10AO60312 1499 aa25.33■■□□□ 1.65
MSH5-SAPCD1-206ENST00000491552 DIP2CQ9Y2E4 1556 aa25.32■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 C9orf84Q5VXU9 1444 aa25.32■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 KDM4FA0A1W2PPD8 638 aa25.32■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 ABCA6Q8N139 1617 aa25.32■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 KIDINS220Q9ULH0 1771 aa25.31■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 SPAG9O60271 1321 aaKnown RBP25.3■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 INO80Q9ULG1 1556 aaPredicted RBP25.3■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 CCDC141Q6ZP82 1450 aa25.29■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 ARHGEF5Q12774 1597 aa25.29■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 ATP7AQ04656 1500 aa25.28■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 ARID4BQ4LE39 1312 aaPredicted RBP25.28■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 SIGLEC1Q9BZZ2 1709 aa25.28■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 FGD6Q6ZV73 1430 aa25.27■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 REREQ9P2R6 1566 aa25.27■■□□□ 1.64
MSH5-SAPCD1-206ENST00000491552 PTPN23Q9H3S7 1636 aa25.26■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 BCORL1Q5H9F3 1711 aa25.26■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 RSPH4AQ5TD94 716 aa25.25■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 AEBP2Q6ZN18 517 aaPredicted RBP25.23■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 TCOF1Q13428 1488 aaKnown RBP25.21■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 RTEL1-TNFRSF6BF6WH68 1400 aa25.21■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 ADAMTSL3P82987 1691 aa25.2■■□□□ 1.63
MSH5-SAPCD1-206ENST00000491552 PPARGC1BQ86YN6 1023 aaKnown RBP25.17■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 AGLP35573 1532 aa25.17■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 ADGBQ8N7X0 1667 aa25.16■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 MAST1Q9Y2H9 1570 aa25.15■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 TSPY4P0CV99 314 aa25.15■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 TSPY10P0CW01 314 aa25.15■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 MADDQ8WXG6 1647 aa25.15■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 A2MP01023 1474 aa25.15■■□□□ 1.62
MSH5-SAPCD1-206ENST00000491552 PLXNC1O60486 1568 aa25.14■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 CROCC2H7BZ55 1655 aa25.13■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 DNMT1P26358 1616 aaKnown RBP25.12■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 MLECQ14165 292 aa25.12■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 ABCC5O15440 1437 aa25.11■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 SHANK2Q9UPX8 1470 aa25.1■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 DAPK1P53355 1430 aa25.1■■□□□ 1.61
MSH5-SAPCD1-206ENST00000491552 FER1L4A9Z1Z3 1794 aa25.08■■□□□ 1.6
MSH5-SAPCD1-206ENST00000491552 RIMS1Q86UR5 1692 aaKnown RBP25.07■■□□□ 1.6
MSH5-SAPCD1-206ENST00000491552 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
MSH5-SAPCD1-206ENST00000491552 DHX29Q7Z478 1369 aaKnown RBP25.05■■□□□ 1.6
MSH5-SAPCD1-206ENST00000491552 PTPRMP28827 1452 aa25.05■■□□□ 1.6
MSH5-SAPCD1-206ENST00000491552 DUOX2Q9NRD8 1548 aa24.96■■□□□ 1.59
MSH5-SAPCD1-206ENST00000491552 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.96■■□□□ 1.59
MSH5-SAPCD1-206ENST00000491552 RRBP1Q9P2E9 1410 aaKnown RBP24.95■■□□□ 1.59
MSH5-SAPCD1-206ENST00000491552 KIF15Q9NS87 1388 aa24.95■■□□□ 1.59
MSH5-SAPCD1-206ENST00000491552 ANKRD30AQ9BXX3 1397 aa24.94■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 CHIC2Q9UKJ5 165 aa24.94■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 ADGRL2O95490 1459 aa24.94■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 EIF2AK4Q9P2K8 1649 aaKnown RBP24.94■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 KIF3BO15066 747 aa24.93■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 GGT6Q6P531 493 aa24.93■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 ESF1Q9H501 851 aaKnown RBP24.93■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 CNTLNQ9NXG0 1405 aa24.93■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 RRP7BPQ9NSQ0 103 aa24.91■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 NCOA1Q15788 1441 aa24.9■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 PTPRKQ15262 1439 aa24.89■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 ERBINQ96RT1 1412 aa24.89■■□□□ 1.58
MSH5-SAPCD1-206ENST00000491552 RNF17Q9BXT8 1623 aaKnown RBP24.89■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms