RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-222ENST00000490207 CDC42BPBQ9Y5S2 1711 aa31.79■■■□□ 2.68
SMC4-222ENST00000490207 POGZQ7Z3K3 1410 aa31.75■■■□□ 2.67
SMC4-222ENST00000490207 EFCAB2Q5VUJ9 269 aa31.75■■■□□ 2.67
SMC4-222ENST00000490207 SCAPERQ9BY12 1400 aa31.75■■■□□ 2.67
SMC4-222ENST00000490207 CDC42BPAQ5VT25 1732 aa31.74■■■□□ 2.67
SMC4-222ENST00000490207 ZFYVE16Q7Z3T8 1539 aa31.71■■■□□ 2.67
SMC4-222ENST00000490207 LOC105371045A0A1W2PR82 267 aa31.69■■■□□ 2.66
SMC4-222ENST00000490207 MAGI2Q86UL8 1455 aa31.66■■■□□ 2.66
SMC4-222ENST00000490207 BCORL1Q5H9F3 1711 aa31.65■■■□□ 2.66
SMC4-222ENST00000490207 ABCC1P33527 1531 aa31.64■■■□□ 2.66
SMC4-222ENST00000490207 YEATS2Q9ULM3 1422 aa31.63■■■□□ 2.65
SMC4-222ENST00000490207 ZNF518AQ6AHZ1 1483 aa31.63■■■□□ 2.65
SMC4-222ENST00000490207 EHBP1L1Q8N3D4 1523 aa31.63■■■□□ 2.65
SMC4-222ENST00000490207 ADAMTSL3P82987 1691 aa31.63■■■□□ 2.65
SMC4-222ENST00000490207 ITSN2Q9NZM3 1697 aa31.63■■■□□ 2.65
SMC4-222ENST00000490207 MTUS2Q5JR59 1369 aa31.62■■■□□ 2.65
SMC4-222ENST00000490207 KDM5CP41229 1560 aa31.61■■■□□ 2.65
SMC4-222ENST00000490207 SIGLEC1Q9BZZ2 1709 aa31.58■■■□□ 2.65
SMC4-222ENST00000490207 HECW2Q9P2P5 1572 aa31.56■■■□□ 2.64
SMC4-222ENST00000490207 ARID4BQ4LE39 1312 aaPredicted RBP31.56■■■□□ 2.64
SMC4-222ENST00000490207 GPATCH8Q9UKJ3 1502 aaKnown RBP31.55■■■□□ 2.64
SMC4-222ENST00000490207 VPS8Q8N3P4 1428 aa31.55■■■□□ 2.64
SMC4-222ENST00000490207 SAMD9LQ8IVG5 1584 aa31.55■■■□□ 2.64
SMC4-222ENST00000490207 MADDQ8WXG6 1647 aa31.54■■■□□ 2.64
SMC4-222ENST00000490207 ARHGEF12Q9NZN5 1544 aa31.52■■■□□ 2.64
SMC4-222ENST00000490207 TIAM1Q13009 1591 aa31.51■■■□□ 2.64
SMC4-222ENST00000490207 CCNB3Q8WWL7 1395 aa31.49■■■□□ 2.63
SMC4-222ENST00000490207 C9orf84Q5VXU9 1444 aa31.49■■■□□ 2.63
SMC4-222ENST00000490207 ATP10AO60312 1499 aa31.47■■■□□ 2.63
SMC4-222ENST00000490207 AFAP1Q8N556 730 aa31.47■■■□□ 2.63
SMC4-222ENST00000490207 SYCP2Q9BX26 1530 aa31.47■■■□□ 2.63
SMC4-222ENST00000490207 TRAPPC8Q9Y2L5 1435 aa31.47■■■□□ 2.63
SMC4-222ENST00000490207 DIP2CQ9Y2E4 1556 aa31.47■■■□□ 2.63
SMC4-222ENST00000490207 SUPT6HQ7KZ85 1726 aaKnown RBP31.46■■■□□ 2.63
SMC4-222ENST00000490207 RIMS1Q86UR5 1692 aaKnown RBP31.46■■■□□ 2.63
SMC4-222ENST00000490207 ABCA6Q8N139 1617 aa31.46■■■□□ 2.63
SMC4-222ENST00000490207 PTPRMP28827 1452 aa31.45■■■□□ 2.62
SMC4-222ENST00000490207 MLH3Q9UHC1 1453 aa31.44■■■□□ 2.62
SMC4-222ENST00000490207 ZNF777Q9ULD5 760 aaPredicted RBP31.43■■■□□ 2.62
SMC4-222ENST00000490207 PLEKHH2Q8IVE3 1493 aa31.4■■■□□ 2.62
SMC4-222ENST00000490207 CFDP1Q9UEE9 299 aaPredicted RBP31.4■■■□□ 2.62
SMC4-222ENST00000490207 MYT1LQ9UL68 1186 aa31.4■■■□□ 2.62
SMC4-222ENST00000490207 FER1L4A9Z1Z3 1794 aa31.4■■■□□ 2.62
SMC4-222ENST00000490207 KIDINS220Q9ULH0 1771 aa31.4■■■□□ 2.62
SMC4-222ENST00000490207 REREQ9P2R6 1566 aa31.39■■■□□ 2.62
SMC4-222ENST00000490207 NCOA2Q15596 1464 aa31.37■■■□□ 2.61
SMC4-222ENST00000490207 KIAA1107Q9UPP5 1409 aa31.35■■■□□ 2.61
SMC4-222ENST00000490207 LRRC9Q6ZRR7 1453 aa31.33■■■□□ 2.61
SMC4-222ENST00000490207 MAP3K1Q13233 1512 aa31.33■■■□□ 2.61
SMC4-222ENST00000490207 MLECQ14165 292 aa31.3■■■□□ 2.6
SMC4-222ENST00000490207 INO80Q9ULG1 1556 aaPredicted RBP31.3■■■□□ 2.6
SMC4-222ENST00000490207 HNRNPMP52272 730 aaKnown RBP eCLIP31.29■■■□□ 2.62e-9■□□□□ 8.7
SMC4-222ENST00000490207 ATP7AQ04656 1500 aa31.28■■■□□ 2.6
SMC4-222ENST00000490207 AGLP35573 1532 aa31.25■■■□□ 2.59
SMC4-222ENST00000490207 SPAG9O60271 1321 aaKnown RBP31.24■■■□□ 2.59
SMC4-222ENST00000490207 CAMSAP2Q08AD1 1489 aa31.22■■■□□ 2.59
SMC4-222ENST00000490207 ZNF644Q9H582 1327 aaPredicted RBP31.22■■■□□ 2.59
SMC4-222ENST00000490207 MBD5Q9P267 1494 aa31.21■■■□□ 2.59
SMC4-222ENST00000490207 ADGBQ8N7X0 1667 aa31.16■■■□□ 2.58
SMC4-222ENST00000490207 PLXNC1O60486 1568 aa31.15■■■□□ 2.58
SMC4-222ENST00000490207 KANK4Q5T7N3 995 aaPredicted RBP31.15■■■□□ 2.58
SMC4-222ENST00000490207 CCDC141Q6ZP82 1450 aa31.14■■■□□ 2.57
SMC4-222ENST00000490207 PLPPR3Q6T4P5 718 aa31.13■■■□□ 2.57
SMC4-222ENST00000490207 ARHGEF5Q12774 1597 aa31.11■■■□□ 2.57
SMC4-222ENST00000490207 A2MP01023 1474 aa31.1■■■□□ 2.57
SMC4-222ENST00000490207 LMTK3Q96Q04 1460 aa31.09■■■□□ 2.57
SMC4-222ENST00000490207 APLP2Q06481 763 aa31.09■■■□□ 2.57
SMC4-222ENST00000490207 RTEL1-TNFRSF6BF6WH68 1400 aa31.07■■■□□ 2.57
SMC4-222ENST00000490207 MYOM3Q5VTT5 1437 aa31.07■■■□□ 2.57
SMC4-222ENST00000490207 C3P01024 1663 aa31.06■■■□□ 2.56
SMC4-222ENST00000490207 PREX1Q8TCU6 1659 aa31.03■■■□□ 2.56
SMC4-222ENST00000490207 MIA2Q96PC5 1412 aa31.03■■■□□ 2.56
SMC4-222ENST00000490207 MROH2AA6NES4 1674 aa31■■■□□ 2.55
SMC4-222ENST00000490207 CNTLNQ9NXG0 1405 aa30.99■■■□□ 2.55
SMC4-222ENST00000490207 RSPH4AQ5TD94 716 aa30.99■■■□□ 2.55
SMC4-222ENST00000490207 ESF1Q9H501 851 aaKnown RBP30.99■■■□□ 2.55
SMC4-222ENST00000490207 CEBPAP49715 358 aaPredicted RBP30.97■■■□□ 2.55
SMC4-222ENST00000490207 CLTCQ00610 1675 aaKnown RBP30.96■■■□□ 2.55
SMC4-222ENST00000490207 MAST1Q9Y2H9 1570 aa30.96■■■□□ 2.55
SMC4-222ENST00000490207 PTPN23Q9H3S7 1636 aa30.93■■■□□ 2.54
SMC4-222ENST00000490207 DHX29Q7Z478 1369 aaKnown RBP30.91■■■□□ 2.54
SMC4-222ENST00000490207 CROCC2H7BZ55 1655 aa30.9■■■□□ 2.54
SMC4-222ENST00000490207 SETD1BQ9UPS6 1966 aaKnown RBP30.88■■■□□ 2.53
SMC4-222ENST00000490207 TSPY4P0CV99 314 aa30.88■■■□□ 2.53
SMC4-222ENST00000490207 TSPY10P0CW01 314 aa30.88■■■□□ 2.53
SMC4-222ENST00000490207 UHRF1BP1Q6BDS2 1440 aa30.86■■■□□ 2.53
SMC4-222ENST00000490207 FGD6Q6ZV73 1430 aa30.85■■■□□ 2.53
SMC4-222ENST00000490207 HSPA2P54652 639 aa30.85■■■□□ 2.53
SMC4-222ENST00000490207 GGT6Q6P531 493 aa30.85■■■□□ 2.53
SMC4-222ENST00000490207 TCOF1Q13428 1488 aaKnown RBP30.82■■■□□ 2.52
SMC4-222ENST00000490207 DNMT1P26358 1616 aaKnown RBP30.81■■■□□ 2.52
SMC4-222ENST00000490207 ZMYM3Q14202 1370 aa30.8■■■□□ 2.52
SMC4-222ENST00000490207 SHANK2Q9UPX8 1470 aa30.8■■■□□ 2.52
SMC4-222ENST00000490207 FAM135AQ9P2D6 1515 aa30.79■■■□□ 2.52
SMC4-222ENST00000490207 NPATQ14207 1427 aa30.79■■■□□ 2.52
SMC4-222ENST00000490207 EIF2AK4Q9P2K8 1649 aaKnown RBP30.78■■■□□ 2.52
SMC4-222ENST00000490207 PPP6R1Q9UPN7 881 aa30.78■■■□□ 2.52
SMC4-222ENST00000490207 KIF3BO15066 747 aa30.77■■■□□ 2.52
SMC4-222ENST00000490207 KDM5DQ9BY66 1539 aa30.76■■■□□ 2.51
SMC4-222ENST00000490207 RNF17Q9BXT8 1623 aaKnown RBP30.76■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms