RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	ZFYVE16	Q7Z3T8	1539 aa		28.59	■■■□□ 2.17
SRM-206	ENST00000490101	VPS8	Q8N3P4	1428 aa		28.59	■■■□□ 2.17
SRM-206	ENST00000490101	LRRIQ1	Q96JM4	1722 aa		28.58	■■■□□ 2.17
SRM-206	ENST00000490101	YEATS2	Q9ULM3	1422 aa		28.58	■■■□□ 2.17
SRM-206	ENST00000490101	TRO	Q12816	1431 aa	Predicted RBP	28.56	■■■□□ 2.16
SRM-206	ENST00000490101	POGZ	Q7Z3K3	1410 aa		28.55	■■■□□ 2.16
SRM-206	ENST00000490101	EFCAB2	Q5VUJ9	269 aa		28.54	■■■□□ 2.16
SRM-206	ENST00000490101	RIMS1	Q86UR5	1692 aa	Known RBP	28.53	■■■□□ 2.16
SRM-206	ENST00000490101	PCF11	O94913	1555 aa	Known RBP	28.53	■■■□□ 2.16
SRM-206	ENST00000490101	ILDR1	Q86SU0	546 aa	Predicted RBP	28.52	■■■□□ 2.16
SRM-206	ENST00000490101	MAGI2	Q86UL8	1455 aa		28.52	■■■□□ 2.16
SRM-206	ENST00000490101	SIGLEC1	Q9BZZ2	1709 aa		28.5	■■■□□ 2.15
SRM-206	ENST00000490101	ARHGAP5	Q13017	1502 aa		28.49	■■■□□ 2.15
SRM-206	ENST00000490101	CASKIN1	Q8WXD9	1431 aa		28.48	■■■□□ 2.15
SRM-206	ENST00000490101	MLEC	Q14165	292 aa		28.47	■■■□□ 2.15
SRM-206	ENST00000490101	PLPPR3	Q6T4P5	718 aa		28.47	■■■□□ 2.15
SRM-206	ENST00000490101	CCDC18	Q5T9S5	1454 aa		28.45	■■■□□ 2.14
SRM-206	ENST00000490101	ATP10A	O60312	1499 aa		28.4	■■■□□ 2.14
SRM-206	ENST00000490101	ZNF518A	Q6AHZ1	1483 aa		28.4	■■■□□ 2.14
SRM-206	ENST00000490101	CDC42BPB	Q9Y5S2	1711 aa		28.38	■■■□□ 2.13
SRM-206	ENST00000490101	AFAP1	Q8N556	730 aa		28.38	■■■□□ 2.13
SRM-206	ENST00000490101	MYT1L	Q9UL68	1186 aa		28.38	■■■□□ 2.13
SRM-206	ENST00000490101	FYCO1	Q9BQS8	1478 aa		28.38	■■■□□ 2.13
SRM-206	ENST00000490101	C9orf84	Q5VXU9	1444 aa		28.37	■■■□□ 2.13
SRM-206	ENST00000490101	LMTK3	Q96Q04	1460 aa		28.37	■■■□□ 2.13
SRM-206	ENST00000490101	FER1L4	A9Z1Z3	1794 aa		28.37	■■■□□ 2.13
SRM-206	ENST00000490101	PREX2	Q70Z35	1606 aa		28.36	■■■□□ 2.13
SRM-206	ENST00000490101	KDM5C	P41229	1560 aa		28.33	■■■□□ 2.13
SRM-206	ENST00000490101	ABCC1	P33527	1531 aa		28.28	■■■□□ 2.12
SRM-206	ENST00000490101	ARHGEF12	Q9NZN5	1544 aa		28.28	■■■□□ 2.12
SRM-206	ENST00000490101	CDC42BPA	Q5VT25	1732 aa		28.27	■■■□□ 2.12
SRM-206	ENST00000490101	DIP2C	Q9Y2E4	1556 aa		28.27	■■■□□ 2.12
SRM-206	ENST00000490101	TRAPPC8	Q9Y2L5	1435 aa		28.26	■■■□□ 2.12
SRM-206	ENST00000490101	HSPA2	P54652	639 aa		28.26	■■■□□ 2.11
SRM-206	ENST00000490101	ITSN2	Q9NZM3	1697 aa		28.26	■■■□□ 2.11
SRM-206	ENST00000490101	APLP2	Q06481	763 aa		28.25	■■■□□ 2.11
SRM-206	ENST00000490101	ABCA6	Q8N139	1617 aa		28.25	■■■□□ 2.11
SRM-206	ENST00000490101	MAP3K1	Q13233	1512 aa		28.23	■■■□□ 2.11
SRM-206	ENST00000490101	ZNF777	Q9ULD5	760 aa	Predicted RBP	28.23	■■■□□ 2.11
SRM-206	ENST00000490101	MLH3	Q9UHC1	1453 aa		28.21	■■■□□ 2.11
SRM-206	ENST00000490101	CEBPA	P49715	358 aa	Predicted RBP	28.19	■■■□□ 2.1
SRM-206	ENST00000490101	RERE	Q9P2R6	1566 aa		28.16	■■■□□ 2.1
SRM-206	ENST00000490101	GPATCH8	Q9UKJ3	1502 aa	Known RBP	28.16	■■■□□ 2.1
SRM-206	ENST00000490101	TIAM1	Q13009	1591 aa		28.16	■■■□□ 2.1
SRM-206	ENST00000490101	SAMD9L	Q8IVG5	1584 aa		28.16	■■■□□ 2.1
SRM-206	ENST00000490101	SYCP2	Q9BX26	1530 aa		28.14	■■■□□ 2.1
SRM-206	ENST00000490101	KIDINS220	Q9ULH0	1771 aa		28.14	■■■□□ 2.09
SRM-206	ENST00000490101	MTUS2	Q5JR59	1369 aa		28.12	■■■□□ 2.09
SRM-206	ENST00000490101	PREX1	Q8TCU6	1659 aa		28.11	■■■□□ 2.09
SRM-206	ENST00000490101	CCNB3	Q8WWL7	1395 aa		28.11	■■■□□ 2.09
SRM-206	ENST00000490101	HNRNPM	P52272	730 aa	Known RBP eCLIP	28.1	■■■□□ 2.09
SRM-206	ENST00000490101	FBXO41	Q8TF61	875 aa		28.09	■■■□□ 2.09
SRM-206	ENST00000490101	CFDP1	Q9UEE9	299 aa	Predicted RBP	28.09	■■■□□ 2.09
SRM-206	ENST00000490101	AGL	P35573	1532 aa		28.08	■■■□□ 2.09
SRM-206	ENST00000490101	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.07	■■■□□ 2.08
SRM-206	ENST00000490101	ESF1	Q9H501	851 aa	Known RBP	28.07	■■■□□ 2.08
SRM-206	ENST00000490101	SPAG9	O60271	1321 aa	Known RBP	28.06	■■■□□ 2.08
SRM-206	ENST00000490101	KANK4	Q5T7N3	995 aa	Predicted RBP	28.05	■■■□□ 2.08
SRM-206	ENST00000490101	LRRC9	Q6ZRR7	1453 aa		28.03	■■■□□ 2.08
SRM-206	ENST00000490101	C3	P01024	1663 aa		28.03	■■■□□ 2.08
SRM-206	ENST00000490101	PLEKHH2	Q8IVE3	1493 aa		28.02	■■■□□ 2.08
SRM-206	ENST00000490101	EHBP1L1	Q8N3D4	1523 aa		28.01	■■■□□ 2.07
SRM-206	ENST00000490101	UHRF1BP1	Q6BDS2	1440 aa		28.01	■■■□□ 2.07
SRM-206	ENST00000490101	KIAA1107	Q9UPP5	1409 aa		28	■■■□□ 2.07
SRM-206	ENST00000490101	ATP7A	Q04656	1500 aa		27.99	■■■□□ 2.07
SRM-206	ENST00000490101	SUPT6H	Q7KZ85	1726 aa	Known RBP	27.98	■■■□□ 2.07
SRM-206	ENST00000490101	INO80	Q9ULG1	1556 aa	Predicted RBP	27.96	■■■□□ 2.07
SRM-206	ENST00000490101	ZNF644	Q9H582	1327 aa	Predicted RBP	27.95	■■■□□ 2.07
SRM-206	ENST00000490101	SETD1B	Q9UPS6	1966 aa	Known RBP	27.94	■■■□□ 2.06
SRM-206	ENST00000490101	CNTLN	Q9NXG0	1405 aa		27.93	■■■□□ 2.06
SRM-206	ENST00000490101	A2M	P01023	1474 aa		27.9	■■■□□ 2.06
SRM-206	ENST00000490101	PLXNC1	O60486	1568 aa		27.89	■■■□□ 2.05
SRM-206	ENST00000490101	STRC	Q7RTU9	1775 aa		27.88	■■■□□ 2.05
SRM-206	ENST00000490101	CERK	Q8TCT0	537 aa		27.86	■■■□□ 2.05
SRM-206	ENST00000490101	MROH2A	A6NES4	1674 aa		27.86	■■■□□ 2.05
SRM-206	ENST00000490101	NCOA2	Q15596	1464 aa		27.84	■■■□□ 2.05
SRM-206	ENST00000490101	MBD5	Q9P267	1494 aa		27.84	■■■□□ 2.05
SRM-206	ENST00000490101	GGT6	Q6P531	493 aa		27.84	■■■□□ 2.05
SRM-206	ENST00000490101	CLTC	Q00610	1675 aa	Known RBP	27.84	■■■□□ 2.05
SRM-206	ENST00000490101	DMRT2	Q9Y5R5	561 aa		27.83	■■■□□ 2.05
SRM-206	ENST00000490101	ADGB	Q8N7X0	1667 aa		27.83	■■■□□ 2.05
SRM-206	ENST00000490101	ZMYM3	Q14202	1370 aa		27.83	■■■□□ 2.05
SRM-206	ENST00000490101	TRIM26	Q12899	539 aa	Predicted RBP	27.82	■■■□□ 2.04
SRM-206	ENST00000490101	CAMSAP2	Q08AD1	1489 aa		27.78	■■■□□ 2.04
SRM-206	ENST00000490101	NPAT	Q14207	1427 aa		27.78	■■■□□ 2.04
SRM-206	ENST00000490101	CCDC141	Q6ZP82	1450 aa		27.76	■■■□□ 2.03
SRM-206	ENST00000490101	RTEL1-TNFRSF6B	F6WH68	1400 aa		27.75	■■■□□ 2.03
SRM-206	ENST00000490101	PTPRT	O14522	1441 aa		27.72	■■■□□ 2.03
SRM-206	ENST00000490101	NCOA1	Q15788	1441 aa		27.72	■■■□□ 2.03
SRM-206	ENST00000490101	DHX29	Q7Z478	1369 aa	Known RBP	27.71	■■■□□ 2.03
SRM-206	ENST00000490101	CAMSAP1	Q5T5Y3	1602 aa		27.7	■■■□□ 2.03
SRM-206	ENST00000490101	MYO3A	Q8NEV4	1616 aa		27.7	■■■□□ 2.02
SRM-206	ENST00000490101	PTPRK	Q15262	1439 aa		27.69	■■■□□ 2.02
SRM-206	ENST00000490101	RRBP1	Q9P2E9	1410 aa	Known RBP	27.67	■■■□□ 2.02
SRM-206	ENST00000490101	KIF3B	O15066	747 aa		27.66	■■■□□ 2.02
SRM-206	ENST00000490101	PPP6R1	Q9UPN7	881 aa		27.66	■■■□□ 2.02
SRM-206	ENST00000490101	RSPH4A	Q5TD94	716 aa		27.65	■■■□□ 2.02
SRM-206	ENST00000490101	ZNF142	P52746	1687 aa	Predicted RBP	27.64	■■■□□ 2.02
SRM-206	ENST00000490101	MYOM3	Q5VTT5	1437 aa		27.64	■■■□□ 2.02
SRM-206	ENST00000490101	ARHGEF5	Q12774	1597 aa		27.64	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms