RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 KHSRPQ92945 711 aaKnown RBP eCLIP9.8□□□□□ -0.843e-6■■□□□ 13.4
DEPDC1-204ENST00000489862 AXIN2Q9Y2T1 843 aa9.79□□□□□ -0.84
DEPDC1-204ENST00000489862 IFFO2Q5TF58 517 aa9.78□□□□□ -0.84
DEPDC1-204ENST00000489862 STAC3Q96MF2 364 aa9.78□□□□□ -0.84
DEPDC1-204ENST00000489862 FBXO3Q9UK99 471 aa9.78□□□□□ -0.84
DEPDC1-204ENST00000489862 EFCAB3Q8N7B9 438 aa9.76□□□□□ -0.85
DEPDC1-204ENST00000489862 TK2O00142 265 aa9.75□□□□□ -0.85
DEPDC1-204ENST00000489862 ARHGAP33O14559 1287 aa9.74□□□□□ -0.85
DEPDC1-204ENST00000489862 POTEEQ6S8J3 1075 aa9.74□□□□□ -0.85
DEPDC1-204ENST00000489862 KCTD12Q96CX2 325 aaKnown RBP9.74□□□□□ -0.85
DEPDC1-204ENST00000489862 NUDT7P0C024 238 aa9.72□□□□□ -0.85
DEPDC1-204ENST00000489862 Q6ZNB5 142 aa9.72□□□□□ -0.85
DEPDC1-204ENST00000489862 LHX6Q9UPM6 363 aa9.71□□□□□ -0.85
DEPDC1-204ENST00000489862 A0A0G2JS52 829 aa9.71□□□□□ -0.86
DEPDC1-204ENST00000489862 PSDA5PKW4 1024 aaPredicted RBP9.7□□□□□ -0.86
DEPDC1-204ENST00000489862 SOX12O15370 315 aa9.69□□□□□ -0.86
DEPDC1-204ENST00000489862 HRO43593 1189 aa9.67□□□□□ -0.86
DEPDC1-204ENST00000489862 PTPN5P54829 565 aa9.63□□□□□ -0.87
DEPDC1-204ENST00000489862 CIZ1Q9ULV3 898 aaPredicted RBP9.63□□□□□ -0.87
DEPDC1-204ENST00000489862 PCDHGA4Q9Y5G9 962 aa9.61□□□□□ -0.87
DEPDC1-204ENST00000489862 SLC34A2O95436 690 aa9.59□□□□□ -0.87
DEPDC1-204ENST00000489862 MS4A4AQ96JQ5 239 aa9.57□□□□□ -0.88
DEPDC1-204ENST00000489862 LAPTM4AQ15012 233 aa9.56□□□□□ -0.88
DEPDC1-204ENST00000489862 DMRTA1Q5VZB9 504 aa9.56□□□□□ -0.88
DEPDC1-204ENST00000489862 KCNH8Q96L42 1107 aa9.56□□□□□ -0.88
DEPDC1-204ENST00000489862 VASPP50552 380 aaPredicted RBP9.56□□□□□ -0.88
DEPDC1-204ENST00000489862 FKBP8Q14318 412 aa9.56□□□□□ -0.88
DEPDC1-204ENST00000489862 PSEN2P49810 448 aa9.53□□□□□ -0.88
DEPDC1-204ENST00000489862 PHF8Q9UPP1 1060 aa9.53□□□□□ -0.88
DEPDC1-204ENST00000489862 TRIM41Q8WV44 630 aa9.53□□□□□ -0.88
DEPDC1-204ENST00000489862 SPOCK2Q92563 424 aa9.51□□□□□ -0.89
DEPDC1-204ENST00000489862 KIF3CO14782 793 aa9.49□□□□□ -0.89
DEPDC1-204ENST00000489862 PPP4R3BQ5MIZ7 849 aa9.49□□□□□ -0.89
DEPDC1-204ENST00000489862 C2orf72A6NCS6 295 aa9.49□□□□□ -0.89
DEPDC1-204ENST00000489862 NLRP6P59044 892 aa9.48□□□□□ -0.89
DEPDC1-204ENST00000489862 TRAF7Q6Q0C0 670 aa9.48□□□□□ -0.89
DEPDC1-204ENST00000489862 THSD4Q6ZMP0 1018 aa9.48□□□□□ -0.89
DEPDC1-204ENST00000489862 GOLGA8CPA6NN73 597 aa9.47□□□□□ -0.89
DEPDC1-204ENST00000489862 VPS9D1Q9Y2B5 631 aa9.42□□□□□ -0.9
DEPDC1-204ENST00000489862 TMC2Q8TDI7 906 aa9.42□□□□□ -0.9
DEPDC1-204ENST00000489862 WNT2BQ93097 391 aa9.4□□□□□ -0.9
DEPDC1-204ENST00000489862 KCNK17Q96T54 332 aa9.4□□□□□ -0.9
DEPDC1-204ENST00000489862 SLC4A5Q9BY07 1137 aa9.38□□□□□ -0.91
DEPDC1-204ENST00000489862 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.36□□□□□ -0.91
DEPDC1-204ENST00000489862 KDM4FA0A1W2PPD8 638 aa9.36□□□□□ -0.91
DEPDC1-204ENST00000489862 GFRA3O60609 400 aa9.36□□□□□ -0.91
DEPDC1-204ENST00000489862 ITGBL1O95965 494 aaPredicted RBP9.36□□□□□ -0.91
DEPDC1-204ENST00000489862 ZFP91Q96JP5 570 aaPredicted RBP9.36□□□□□ -0.91
DEPDC1-204ENST00000489862 RIOK3O14730 519 aaKnown RBP9.35□□□□□ -0.91
DEPDC1-204ENST00000489862 VGFO15240 615 aaPredicted RBP9.35□□□□□ -0.91
DEPDC1-204ENST00000489862 MRPL50Q8N5N7 158 aaKnown RBP9.34□□□□□ -0.91
DEPDC1-204ENST00000489862 PTCD2Q8WV60 388 aaKnown RBP9.34□□□□□ -0.91
DEPDC1-204ENST00000489862 ZNF787Q6DD87 383 aa9.33□□□□□ -0.92
DEPDC1-204ENST00000489862 FBXO22Q8NEZ5 403 aa9.33□□□□□ -0.92
DEPDC1-204ENST00000489862 TBC1D12O60347 775 aa9.32□□□□□ -0.92
DEPDC1-204ENST00000489862 LCE2BO14633 110 aa9.31□□□□□ -0.92
DEPDC1-204ENST00000489862 BHMG1C9JSJ3 638 aaPredicted RBP9.31□□□□□ -0.92
DEPDC1-204ENST00000489862 NBPF3Q9H094 633 aa9.29□□□□□ -0.92
DEPDC1-204ENST00000489862 NRG2O14511 850 aaPredicted RBP9.27□□□□□ -0.93
DEPDC1-204ENST00000489862 KCNC4Q03721 635 aa9.26□□□□□ -0.93
DEPDC1-204ENST00000489862 ZNF775Q96BV0 537 aaPredicted RBP9.26□□□□□ -0.93
DEPDC1-204ENST00000489862 IFNLR1Q8IU57 520 aaPredicted RBP9.25□□□□□ -0.93
DEPDC1-204ENST00000489862 TAOK2Q9UL54 1235 aa9.25□□□□□ -0.93
DEPDC1-204ENST00000489862 NYAP1Q6ZVC0 841 aa9.24□□□□□ -0.93
DEPDC1-204ENST00000489862 BCL2L12Q9HB09 334 aa9.23□□□□□ -0.93
DEPDC1-204ENST00000489862 ANKK1Q8NFD2 765 aa9.22□□□□□ -0.93
DEPDC1-204ENST00000489862 PTPREP23469 700 aa9.21□□□□□ -0.93
DEPDC1-204ENST00000489862 MFRPQ9BY79 579 aa9.2□□□□□ -0.94
DEPDC1-204ENST00000489862 ZBED2Q9BTP6 218 aa9.19□□□□□ -0.94
DEPDC1-204ENST00000489862 ZNF454Q8N9F8 522 aa9.18□□□□□ -0.94
DEPDC1-204ENST00000489862 BCL11BQ9C0K0 894 aaPredicted RBP9.17□□□□□ -0.94
DEPDC1-204ENST00000489862 RNF25Q96BH1 459 aaPredicted RBP9.16□□□□□ -0.94
DEPDC1-204ENST00000489862 STK24Q9Y6E0 443 aa9.15□□□□□ -0.94
DEPDC1-204ENST00000489862 PLPP6Q8IY26 295 aa9.14□□□□□ -0.95
DEPDC1-204ENST00000489862 FOXK1P85037 733 aa9.13□□□□□ -0.95
DEPDC1-204ENST00000489862 PRKD2Q9BZL6 878 aa9.1□□□□□ -0.95
DEPDC1-204ENST00000489862 SOWAHBA6NEL2 793 aa9.09□□□□□ -0.95
DEPDC1-204ENST00000489862 V9GY48 417 aaPredicted RBP9.08□□□□□ -0.96
DEPDC1-204ENST00000489862 BCAMP50895 628 aa9.07□□□□□ -0.96
DEPDC1-204ENST00000489862 LAPTM4BQ86VI4 370 aa9.06□□□□□ -0.96
DEPDC1-204ENST00000489862 RABGEF1Q9UJ41 708 aa9.06□□□□□ -0.96
DEPDC1-204ENST00000489862 FOSBP53539 338 aa9.05□□□□□ -0.96
DEPDC1-204ENST00000489862 GPHNQ9NQX3 736 aaPredicted RBP9.04□□□□□ -0.96
DEPDC1-204ENST00000489862 WBP1LQ9NX94 342 aa9.03□□□□□ -0.96
DEPDC1-204ENST00000489862 PDZRN3Q9UPQ7 1066 aa9.03□□□□□ -0.96
DEPDC1-204ENST00000489862 STK25O00506 426 aa9.02□□□□□ -0.97
DEPDC1-204ENST00000489862 ZDHHC16Q969W1 377 aa9.01□□□□□ -0.97
DEPDC1-204ENST00000489862 OXER1Q8TDS5 423 aa9□□□□□ -0.97
DEPDC1-204ENST00000489862 JPH4Q96JJ6 628 aa9□□□□□ -0.97
DEPDC1-204ENST00000489862 DSG2Q14126 1118 aa8.99□□□□□ -0.97
DEPDC1-204ENST00000489862 ZFRQ96KR1 1074 aaKnown RBP8.98□□□□□ -0.97
DEPDC1-204ENST00000489862 PPP1R3GB7ZBB8 358 aa8.98□□□□□ -0.97
DEPDC1-204ENST00000489862 TREML4Q6UXN2 200 aa8.98□□□□□ -0.97
DEPDC1-204ENST00000489862 TSR3Q9UJK0 312 aaKnown RBP8.97□□□□□ -0.97
DEPDC1-204ENST00000489862 UPF1Q92900 1129 aaKnown RBP eCLIP8.96□□□□□ -0.98
DEPDC1-204ENST00000489862 STK17AQ9UEE5 414 aa8.96□□□□□ -0.98
DEPDC1-204ENST00000489862 ADAM33Q9BZ11 813 aa8.95□□□□□ -0.98
DEPDC1-204ENST00000489862 LOC100996750A0A140TA64 210 aa8.94□□□□□ -0.98
DEPDC1-204ENST00000489862 KRTAP4-6Q9BYQ5 205 aa8.94□□□□□ -0.98
DEPDC1-204ENST00000489862 PPP1R37O75864 691 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms