RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CDC42BPBQ9Y5S2 1711 aa32.51■■■□□ 2.8
SMC4-221ENST00000489573 MAPKBP1O60336 1514 aa32.49■■■□□ 2.79
SMC4-221ENST00000489573 ZNF777Q9ULD5 760 aaPredicted RBP32.49■■■□□ 2.79
SMC4-221ENST00000489573 PTPRKQ15262 1439 aa32.48■■■□□ 2.79
SMC4-221ENST00000489573 ABCA9Q8IUA7 1624 aa32.48■■■□□ 2.79
SMC4-221ENST00000489573 ARHGAP5Q13017 1502 aa32.47■■■□□ 2.79
SMC4-221ENST00000489573 DNMT1P26358 1616 aaKnown RBP32.47■■■□□ 2.79
SMC4-221ENST00000489573 PLCH2O75038 1416 aa32.46■■■□□ 2.79
SMC4-221ENST00000489573 DAPK1P53355 1430 aa32.44■■■□□ 2.78
SMC4-221ENST00000489573 TRHP20396 242 aaPredicted RBP32.43■■■□□ 2.78
SMC4-221ENST00000489573 ARAP3Q8WWN8 1544 aa32.42■■■□□ 2.78
SMC4-221ENST00000489573 SAMD9LQ8IVG5 1584 aa32.42■■■□□ 2.78
SMC4-221ENST00000489573 ABCC5O15440 1437 aa32.41■■■□□ 2.78
SMC4-221ENST00000489573 SETD5Q9C0A6 1442 aa32.37■■■□□ 2.77
SMC4-221ENST00000489573 PLEKHH2Q8IVE3 1493 aa32.34■■■□□ 2.77
SMC4-221ENST00000489573 EFCAB2Q5VUJ9 269 aa32.34■■■□□ 2.77
SMC4-221ENST00000489573 ARHGEF5Q12774 1597 aa32.33■■■□□ 2.77
SMC4-221ENST00000489573 HFM1A2PYH4 1435 aa32.33■■■□□ 2.77
SMC4-221ENST00000489573 AKNAQ7Z591 1439 aa32.33■■■□□ 2.77
SMC4-221ENST00000489573 CROCC2H7BZ55 1655 aa32.33■■■□□ 2.77
SMC4-221ENST00000489573 RAB3GAP2Q9H2M9 1393 aa32.32■■■□□ 2.76
SMC4-221ENST00000489573 MBD5Q9P267 1494 aa32.3■■■□□ 2.76
SMC4-221ENST00000489573 CHIC2Q9UKJ5 165 aa32.3■■■□□ 2.76
SMC4-221ENST00000489573 KIAA1107Q9UPP5 1409 aa32.3■■■□□ 2.76
SMC4-221ENST00000489573 SYCP2Q9BX26 1530 aa32.29■■■□□ 2.76
SMC4-221ENST00000489573 ROCK1Q13464 1354 aa32.29■■■□□ 2.76
SMC4-221ENST00000489573 SHANK2Q9UPX8 1470 aa32.28■■■□□ 2.76
SMC4-221ENST00000489573 NAIPQ13075 1403 aa32.27■■■□□ 2.76
SMC4-221ENST00000489573 CCER1Q8TC90 406 aaPredicted RBP32.26■■■□□ 2.75
SMC4-221ENST00000489573 CCDC141Q6ZP82 1450 aa32.26■■■□□ 2.75
SMC4-221ENST00000489573 ABCC1P33527 1531 aa32.26■■■□□ 2.75
SMC4-221ENST00000489573 HNRNPMP52272 730 aaKnown RBP eCLIP32.25■■■□□ 2.752e-9■□□□□ 8.7
SMC4-221ENST00000489573 CD109Q6YHK3 1445 aa32.25■■■□□ 2.75
SMC4-221ENST00000489573 FANCAO15360 1455 aa32.24■■■□□ 2.75
SMC4-221ENST00000489573 RSPH4AQ5TD94 716 aa32.24■■■□□ 2.75
SMC4-221ENST00000489573 GCC2Q8IWJ2 1684 aa32.24■■■□□ 2.75
SMC4-221ENST00000489573 ADGBQ8N7X0 1667 aa32.23■■■□□ 2.75
SMC4-221ENST00000489573 GLI2P10070 1586 aa32.23■■■□□ 2.75
SMC4-221ENST00000489573 ADGRL2O95490 1459 aa32.22■■■□□ 2.75
SMC4-221ENST00000489573 HRCP23327 699 aa32.22■■■□□ 2.75
SMC4-221ENST00000489573 RRP7BPQ9NSQ0 103 aa32.21■■■□□ 2.75
SMC4-221ENST00000489573 C9orf84Q5VXU9 1444 aa32.2■■■□□ 2.74
SMC4-221ENST00000489573 ARHGEF12Q9NZN5 1544 aa32.19■■■□□ 2.74
SMC4-221ENST00000489573 DIP2BQ9P265 1576 aa32.18■■■□□ 2.74
SMC4-221ENST00000489573 TSPY4P0CV99 314 aa32.17■■■□□ 2.74
SMC4-221ENST00000489573 TSPY10P0CW01 314 aa32.17■■■□□ 2.74
SMC4-221ENST00000489573 CFAP74Q9C0B2 1584 aa32.16■■■□□ 2.74
SMC4-221ENST00000489573 MAP3K4Q9Y6R4 1608 aa32.15■■■□□ 2.74
SMC4-221ENST00000489573 ANKRD30AQ9BXX3 1397 aa32.15■■■□□ 2.74
SMC4-221ENST00000489573 NCOA1Q15788 1441 aa32.14■■■□□ 2.74
SMC4-221ENST00000489573 MAST1Q9Y2H9 1570 aa32.13■■■□□ 2.73
SMC4-221ENST00000489573 DHX57Q6P158 1386 aaKnown RBP32.12■■■□□ 2.73
SMC4-221ENST00000489573 ADGRL1O94910 1474 aa32.11■■■□□ 2.73
SMC4-221ENST00000489573 TRAPPC8Q9Y2L5 1435 aa32.09■■■□□ 2.73
SMC4-221ENST00000489573 FAM69CQ0P6D2 419 aa32.07■■■□□ 2.72
SMC4-221ENST00000489573 ZEB1P37275 1124 aaPredicted RBP32.06■■■□□ 2.72
SMC4-221ENST00000489573 NEO1Q92859 1461 aa32.06■■■□□ 2.72
SMC4-221ENST00000489573 SCAPERQ9BY12 1400 aa32.05■■■□□ 2.72
SMC4-221ENST00000489573 KDM6BO15054 1643 aa32.04■■■□□ 2.72
SMC4-221ENST00000489573 PLXNC1O60486 1568 aa32■■■□□ 2.71
SMC4-221ENST00000489573 KIF15Q9NS87 1388 aa31.99■■■□□ 2.71
SMC4-221ENST00000489573 ACIN1Q9UKV3 1341 aaKnown RBP31.98■■■□□ 2.71
SMC4-221ENST00000489573 RTEL1-TNFRSF6BF6WH68 1400 aa31.96■■■□□ 2.71
SMC4-221ENST00000489573 ANKRD50Q9ULJ7 1429 aa31.96■■■□□ 2.71
SMC4-221ENST00000489573 CLSPNQ9HAW4 1339 aa31.95■■■□□ 2.71
SMC4-221ENST00000489573 AFAP1Q8N556 730 aa31.95■■■□□ 2.71
SMC4-221ENST00000489573 SPAG9O60271 1321 aaKnown RBP31.95■■■□□ 2.7
SMC4-221ENST00000489573 KIF13AQ9H1H9 1805 aa31.94■■■□□ 2.7
SMC4-221ENST00000489573 ZNF518AQ6AHZ1 1483 aa31.94■■■□□ 2.7
SMC4-221ENST00000489573 ZFYVE16Q7Z3T8 1539 aa31.93■■■□□ 2.7
SMC4-221ENST00000489573 POGZQ7Z3K3 1410 aa31.92■■■□□ 2.7
SMC4-221ENST00000489573 INO80Q9ULG1 1556 aaPredicted RBP31.91■■■□□ 2.7
SMC4-221ENST00000489573 TEX14Q8IWB6 1497 aa31.9■■■□□ 2.7
SMC4-221ENST00000489573 PPRC1Q5VV67 1664 aaKnown RBP31.9■■■□□ 2.7
SMC4-221ENST00000489573 ATP7AQ04656 1500 aa31.88■■■□□ 2.69
SMC4-221ENST00000489573 DUOX2Q9NRD8 1548 aa31.86■■■□□ 2.69
SMC4-221ENST00000489573 TRIM52Q96A61 297 aa31.86■■■□□ 2.69
SMC4-221ENST00000489573 KDM5CP41229 1560 aa31.86■■■□□ 2.69
SMC4-221ENST00000489573 DENND4BO75064 1496 aaPredicted RBP31.86■■■□□ 2.69
SMC4-221ENST00000489573 TSPOAP1O95153 1857 aa31.86■■■□□ 2.69
SMC4-221ENST00000489573 ERBINQ96RT1 1412 aa31.8■■■□□ 2.68
SMC4-221ENST00000489573 MLH3Q9UHC1 1453 aa31.78■■■□□ 2.68
SMC4-221ENST00000489573 KIDINS220Q9ULH0 1771 aa31.77■■■□□ 2.68
SMC4-221ENST00000489573 HECW2Q9P2P5 1572 aa31.77■■■□□ 2.68
SMC4-221ENST00000489573 RICTORQ6R327 1708 aa31.76■■■□□ 2.67
SMC4-221ENST00000489573 MYT1LQ9UL68 1186 aa31.76■■■□□ 2.67
SMC4-221ENST00000489573 RAPGEF3O95398 923 aa31.73■■■□□ 2.67
SMC4-221ENST00000489573 MPHOSPH9Q99550 1183 aa31.73■■■□□ 2.67
SMC4-221ENST00000489573 KDM5DQ9BY66 1539 aa31.72■■■□□ 2.67
SMC4-221ENST00000489573 PZPP20742 1482 aa31.71■■■□□ 2.67
SMC4-221ENST00000489573 FRMPD1Q5SYB0 1578 aa31.7■■■□□ 2.67
SMC4-221ENST00000489573 UNC13BO14795 1591 aa31.7■■■□□ 2.66
SMC4-221ENST00000489573 NUP155O75694 1391 aa31.67■■■□□ 2.66
SMC4-221ENST00000489573 DHX29Q7Z478 1369 aaKnown RBP31.65■■■□□ 2.66
SMC4-221ENST00000489573 ZMYM4Q5VZL5 1548 aa31.65■■■□□ 2.66
SMC4-221ENST00000489573 SLC4A1APQ9BWU0 796 aaKnown RBP31.65■■■□□ 2.66
SMC4-221ENST00000489573 ABCA6Q8N139 1617 aa31.63■■■□□ 2.65
SMC4-221ENST00000489573 EIF2AK4Q9P2K8 1649 aaKnown RBP31.62■■■□□ 2.65
SMC4-221ENST00000489573 A2MP01023 1474 aa31.62■■■□□ 2.65
SMC4-221ENST00000489573 MAGI2Q86UL8 1455 aa31.62■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms