RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.06□□□□□ -0.96
PTCD3-216ENST00000487043 PHF8Q9UPP1 1060 aa9.06□□□□□ -0.96
PTCD3-216ENST00000487043 BBXQ8WY36 941 aaPredicted RBP9.05□□□□□ -0.96
PTCD3-216ENST00000487043 TAOK2Q9UL54 1235 aa9.05□□□□□ -0.96
PTCD3-216ENST00000487043 RGL2O15211 777 aa9.03□□□□□ -0.96
PTCD3-216ENST00000487043 HOXB1P14653 301 aaPredicted RBP9.03□□□□□ -0.96
PTCD3-216ENST00000487043 MS4A4AQ96JQ5 239 aa9.03□□□□□ -0.96
PTCD3-216ENST00000487043 ERBB3P21860 1342 aa9.03□□□□□ -0.96
PTCD3-216ENST00000487043 PAXIP1Q6ZW49 1069 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-216ENST00000487043 VSIG10Q8N0Z9 540 aa9.02□□□□□ -0.97
PTCD3-216ENST00000487043 CFAP44Q96MT7 982 aa9.02□□□□□ -0.97
PTCD3-216ENST00000487043 BCL11BQ9C0K0 894 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-216ENST00000487043 KRTAP3-3Q9BYR6 98 aa9.01□□□□□ -0.97
PTCD3-216ENST00000487043 KRTAP3-2Q9BYR7 98 aa9.01□□□□□ -0.97
PTCD3-216ENST00000487043 STK24Q9Y6E0 443 aa9.01□□□□□ -0.97
PTCD3-216ENST00000487043 NLRP6P59044 892 aa9□□□□□ -0.97
PTCD3-216ENST00000487043 TMEM92Q6UXU6 159 aa9□□□□□ -0.97
PTCD3-216ENST00000487043 BCANQ96GW7 911 aa8.98□□□□□ -0.97
PTCD3-216ENST00000487043 STK25O00506 426 aa8.97□□□□□ -0.97
PTCD3-216ENST00000487043 VARS2Q5ST30 1063 aaKnown RBP8.95□□□□□ -0.98
PTCD3-216ENST00000487043 ZSWIM6Q9HCJ5 1215 aa8.95□□□□□ -0.98
PTCD3-216ENST00000487043 FBXO22Q8NEZ5 403 aa8.93□□□□□ -0.98
PTCD3-216ENST00000487043 CHGAP10645 457 aaKnown RBP8.92□□□□□ -0.98
PTCD3-216ENST00000487043 SPRYD3Q8NCJ5 442 aa8.92□□□□□ -0.98
PTCD3-216ENST00000487043 KDM2AQ9Y2K7 1162 aa8.92□□□□□ -0.98
PTCD3-216ENST00000487043 MFRPQ9BY79 579 aa8.91□□□□□ -0.98
PTCD3-216ENST00000487043 ARSIQ5FYB1 569 aa8.9□□□□□ -0.98
PTCD3-216ENST00000487043 GPR153Q6NV75 609 aa8.9□□□□□ -0.98
PTCD3-216ENST00000487043 PRKCSHP14314 528 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-216ENST00000487043 ZNF687Q8N1G0 1237 aa8.86□□□□□ -0.99
PTCD3-216ENST00000487043 TSHZ2Q9NRE2 1034 aa8.86□□□□□ -0.99
PTCD3-216ENST00000487043 KHSRPQ92945 711 aaKnown RBP eCLIP8.85□□□□□ -0.993e-8■■■□□ 17.3
PTCD3-216ENST00000487043 C2orf72A6NCS6 295 aa8.84□□□□□ -0.99
PTCD3-216ENST00000487043 RNF166Q96A37 237 aaPredicted RBP8.83□□□□□ -1
PTCD3-216ENST00000487043 TMC2Q8TDI7 906 aa8.82□□□□□ -1
PTCD3-216ENST00000487043 ZNF316A6NFI3 1004 aaPredicted RBP8.81□□□□□ -1
PTCD3-216ENST00000487043 MYT1LQ9UL68 1186 aa8.81□□□□□ -1
PTCD3-216ENST00000487043 KIF3CO14782 793 aa8.8□□□□□ -1
PTCD3-216ENST00000487043 NUDT7P0C024 238 aa8.79□□□□□ -1
PTCD3-216ENST00000487043 ANKRD13DQ6ZTN6 518 aa8.79□□□□□ -1
PTCD3-216ENST00000487043 HS6ST3Q8IZP7 471 aa8.79□□□□□ -1
PTCD3-216ENST00000487043 PPP1R37O75864 691 aa8.75□□□□□ -1.01
PTCD3-216ENST00000487043 PTGER2P43116 358 aa8.75□□□□□ -1.01
PTCD3-216ENST00000487043 TPRNQ4KMQ1 711 aa8.75□□□□□ -1.01
PTCD3-216ENST00000487043 PCDHGA4Q9Y5G9 962 aa8.75□□□□□ -1.01
PTCD3-216ENST00000487043 DNAJC5Q9H3Z4 198 aa8.74□□□□□ -1.01
PTCD3-216ENST00000487043 SLC34A2O95436 690 aa8.73□□□□□ -1.01
PTCD3-216ENST00000487043 LHX6Q9UPM6 363 aa8.73□□□□□ -1.01
PTCD3-216ENST00000487043 LSM11P83369 360 aaKnown RBP eCLIP8.72□□□□□ -1.01
PTCD3-216ENST00000487043 NKX1-1Q15270 411 aaPredicted RBP8.72□□□□□ -1.01
PTCD3-216ENST00000487043 PBX2P40425 430 aa8.69□□□□□ -1.02
PTCD3-216ENST00000487043 AXIN2Q9Y2T1 843 aa8.69□□□□□ -1.02
PTCD3-216ENST00000487043 PSDA5PKW4 1024 aaPredicted RBP8.65□□□□□ -1.02
PTCD3-216ENST00000487043 GTPBP6O43824 516 aaPredicted RBP8.65□□□□□ -1.02
PTCD3-216ENST00000487043 NBR1Q14596 966 aa8.65□□□□□ -1.02
PTCD3-216ENST00000487043 PLPP6Q8IY26 295 aa8.65□□□□□ -1.02
PTCD3-216ENST00000487043 FOXK1P85037 733 aa8.64□□□□□ -1.03
PTCD3-216ENST00000487043 POTEEQ6S8J3 1075 aa8.64□□□□□ -1.03
PTCD3-216ENST00000487043 PTCD2Q8WV60 388 aaKnown RBP8.63□□□□□ -1.03
PTCD3-216ENST00000487043 GPHNQ9NQX3 736 aaPredicted RBP8.63□□□□□ -1.03
PTCD3-216ENST00000487043 ARHGAP33O14559 1287 aa8.62□□□□□ -1.03
PTCD3-216ENST00000487043 TBC1D12O60347 775 aa8.62□□□□□ -1.03
PTCD3-216ENST00000487043 DSG2Q14126 1118 aa8.61□□□□□ -1.03
PTCD3-216ENST00000487043 ADGRD1Q6QNK2 874 aa8.59□□□□□ -1.03
PTCD3-216ENST00000487043 PPP4R3BQ5MIZ7 849 aa8.58□□□□□ -1.04
PTCD3-216ENST00000487043 RYDENQ9NUL5 291 aaKnown RBP8.58□□□□□ -1.04
PTCD3-216ENST00000487043 KDM4FA0A1W2PPD8 638 aa8.57□□□□□ -1.04
PTCD3-216ENST00000487043 PSEN2P49810 448 aa8.56□□□□□ -1.04
PTCD3-216ENST00000487043 UPF1Q92900 1129 aaKnown RBP eCLIP8.56□□□□□ -1.04
PTCD3-216ENST00000487043 KCNH8Q96L42 1107 aa8.55□□□□□ -1.04
PTCD3-216ENST00000487043 STAC3Q96MF2 364 aa8.55□□□□□ -1.04
PTCD3-216ENST00000487043 HCSTQ9UBK5 93 aa8.55□□□□□ -1.04
PTCD3-216ENST00000487043 DMRTA1Q5VZB9 504 aa8.54□□□□□ -1.04
PTCD3-216ENST00000487043 TK2O00142 265 aa8.53□□□□□ -1.04
PTCD3-216ENST00000487043 KCNK17Q96T54 332 aa8.52□□□□□ -1.05
PTCD3-216ENST00000487043 PPP1R15BQ5SWA1 713 aa8.5□□□□□ -1.05
PTCD3-216ENST00000487043 ZNF454Q8N9F8 522 aa8.5□□□□□ -1.05
PTCD3-216ENST00000487043 OXER1Q8TDS5 423 aa8.5□□□□□ -1.05
PTCD3-216ENST00000487043 CRISPLD2Q9H0B8 497 aa8.5□□□□□ -1.05
PTCD3-216ENST00000487043 PLA2G2EQ9NZK7 142 aa8.5□□□□□ -1.05
PTCD3-216ENST00000487043 KCTD12Q96CX2 325 aaKnown RBP8.49□□□□□ -1.05
PTCD3-216ENST00000487043 HRO43593 1189 aa8.48□□□□□ -1.05
PTCD3-216ENST00000487043 PDE4AP27815 886 aa8.48□□□□□ -1.05
PTCD3-216ENST00000487043 NCKAP5LQ9HCH0 1330 aa8.48□□□□□ -1.05
PTCD3-216ENST00000487043 LARP6Q9BRS8 491 aaKnown RBP8.44□□□□□ -1.06
PTCD3-216ENST00000487043 BCL2L12Q9HB09 334 aa8.43□□□□□ -1.06
PTCD3-216ENST00000487043 VPS9D1Q9Y2B5 631 aa8.43□□□□□ -1.06
PTCD3-216ENST00000487043 PTPREP23469 700 aa8.42□□□□□ -1.06
PTCD3-216ENST00000487043 CADPS2Q86UW7 1296 aa8.42□□□□□ -1.06
PTCD3-216ENST00000487043 DDX27Q96GQ7 796 aaKnown RBP8.42□□□□□ -1.06
PTCD3-216ENST00000487043 EVI5O60447 810 aa8.41□□□□□ -1.06
PTCD3-216ENST00000487043 FOSBP53539 338 aa8.41□□□□□ -1.06
PTCD3-216ENST00000487043 PTPN5P54829 565 aa8.41□□□□□ -1.06
PTCD3-216ENST00000487043 WDR70Q9NW82 654 aa8.41□□□□□ -1.06
PTCD3-216ENST00000487043 MAP3K9P80192 1104 aa8.4□□□□□ -1.06
PTCD3-216ENST00000487043 GOLGA8CPA6NN73 597 aa8.39□□□□□ -1.07
PTCD3-216ENST00000487043 MFSD10Q14728 455 aa8.39□□□□□ -1.07
PTCD3-216ENST00000487043 P3H3Q8IVL6 736 aa8.39□□□□□ -1.07
PTCD3-216ENST00000487043 JPH4Q96JJ6 628 aa8.39□□□□□ -1.07
PTCD3-216ENST00000487043 ZDHHC16Q969W1 377 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms