RNA–Protein interactions for RNA: ENST00000486116.5

PTPN7-213, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 4

Gene PTPN7, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-213ENST00000486116 SAMD9Q5K651 1589 aa17■□□□□ 0.31
PTPN7-213ENST00000486116 UHRF1BP1Q6BDS2 1440 aa16.99■□□□□ 0.31
PTPN7-213ENST00000486116 CEBPAP49715 358 aaPredicted RBP16.99■□□□□ 0.31
PTPN7-213ENST00000486116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.99■□□□□ 0.31
PTPN7-213ENST00000486116 P3H3Q8IVL6 736 aa16.98■□□□□ 0.31
PTPN7-213ENST00000486116 NUP153P49790 1475 aaKnown RBP16.98■□□□□ 0.31
PTPN7-213ENST00000486116 C3P01024 1663 aa16.97■□□□□ 0.31
PTPN7-213ENST00000486116 ATP10AO60312 1499 aa16.93■□□□□ 0.3
PTPN7-213ENST00000486116 PRXQ9BXM0 1461 aa16.93■□□□□ 0.3
PTPN7-213ENST00000486116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
PTPN7-213ENST00000486116 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
PTPN7-213ENST00000486116 C9orf84Q5VXU9 1444 aa16.93■□□□□ 0.3
PTPN7-213ENST00000486116 FAM9AQ8IZU1 332 aaPredicted RBP16.92■□□□□ 0.3
PTPN7-213ENST00000486116 MED1Q15648 1581 aaPredicted RBP16.91■□□□□ 0.3
PTPN7-213ENST00000486116 NCOA1Q15788 1441 aa16.88■□□□□ 0.29
PTPN7-213ENST00000486116 SCAPERQ9BY12 1400 aa16.87■□□□□ 0.29
PTPN7-213ENST00000486116 PLEKHD1A6NEE1 506 aa16.83■□□□□ 0.28
PTPN7-213ENST00000486116 MYO5CQ9NQX4 1742 aa16.83■□□□□ 0.28
PTPN7-213ENST00000486116 CAMSAP1Q5T5Y3 1602 aa16.82■□□□□ 0.28
PTPN7-213ENST00000486116 DIP2CQ9Y2E4 1556 aa16.82■□□□□ 0.28
PTPN7-213ENST00000486116 UBAP1LF5GYI3 381 aa16.82■□□□□ 0.28
PTPN7-213ENST00000486116 REREQ9P2R6 1566 aa16.81■□□□□ 0.28
PTPN7-213ENST00000486116 KDM5CP41229 1560 aa16.81■□□□□ 0.28
PTPN7-213ENST00000486116 PLCH2O75038 1416 aa16.8■□□□□ 0.28
PTPN7-213ENST00000486116 ABCA6Q8N139 1617 aa16.8■□□□□ 0.28
PTPN7-213ENST00000486116 ZNF335Q9H4Z2 1342 aaPredicted RBP16.79■□□□□ 0.28
PTPN7-213ENST00000486116 TRAPPC8Q9Y2L5 1435 aa16.79■□□□□ 0.28
PTPN7-213ENST00000486116 SUPT6HQ7KZ85 1726 aaKnown RBP16.77■□□□□ 0.28
PTPN7-213ENST00000486116 CDK13Q14004 1512 aaKnown RBP16.75■□□□□ 0.27
PTPN7-213ENST00000486116 ZNF518AQ6AHZ1 1483 aa16.75■□□□□ 0.27
PTPN7-213ENST00000486116 AGLP35573 1532 aa16.74■□□□□ 0.27
PTPN7-213ENST00000486116 MROH2AA6NES4 1674 aa16.73■□□□□ 0.27
PTPN7-213ENST00000486116 ZNF142P52746 1687 aaPredicted RBP16.73■□□□□ 0.27
PTPN7-213ENST00000486116 HSPA1LP34931 641 aa16.73■□□□□ 0.27
PTPN7-213ENST00000486116 NCKAP5LQ9HCH0 1330 aa16.7■□□□□ 0.26
PTPN7-213ENST00000486116 KIF14Q15058 1648 aa16.7■□□□□ 0.26
PTPN7-213ENST00000486116 MYO3AQ8NEV4 1616 aa16.7■□□□□ 0.26
PTPN7-213ENST00000486116 AFAP1Q8N556 730 aa16.68■□□□□ 0.26
PTPN7-213ENST00000486116 EFCAB2Q5VUJ9 269 aa16.67■□□□□ 0.26
PTPN7-213ENST00000486116 NPATQ14207 1427 aa16.67■□□□□ 0.26
PTPN7-213ENST00000486116 PLA2R1Q13018 1463 aa16.67■□□□□ 0.26
PTPN7-213ENST00000486116 TCOF1Q13428 1488 aaKnown RBP16.67■□□□□ 0.26
PTPN7-213ENST00000486116 CNTLNQ9NXG0 1405 aa16.66■□□□□ 0.26
PTPN7-213ENST00000486116 MLH3Q9UHC1 1453 aa16.66■□□□□ 0.26
PTPN7-213ENST00000486116 CDC42BPBQ9Y5S2 1711 aa16.65■□□□□ 0.26
PTPN7-213ENST00000486116 KIDINS220Q9ULH0 1771 aa16.65■□□□□ 0.26
PTPN7-213ENST00000486116 ARHGAP5Q13017 1502 aa16.65■□□□□ 0.26
PTPN7-213ENST00000486116 CEP170BQ9Y4F5 1589 aaPredicted RBP16.64■□□□□ 0.25
PTPN7-213ENST00000486116 RANGAP1P46060 587 aaPredicted RBP16.64■□□□□ 0.25
PTPN7-213ENST00000486116 ESF1Q9H501 851 aaKnown RBP16.64■□□□□ 0.25
PTPN7-213ENST00000486116 ITSN2Q9NZM3 1697 aa16.64■□□□□ 0.25
PTPN7-213ENST00000486116 SCAF1Q9H7N4 1312 aaKnown RBP16.64■□□□□ 0.25
PTPN7-213ENST00000486116 ALKQ9UM73 1620 aa16.63■□□□□ 0.25
PTPN7-213ENST00000486116 CLTCQ00610 1675 aaKnown RBP16.62■□□□□ 0.25
PTPN7-213ENST00000486116 PIP4K2BP78356 416 aa16.62■□□□□ 0.25
PTPN7-213ENST00000486116 PHF23Q9BUL5 403 aaPredicted RBP16.62■□□□□ 0.25
PTPN7-213ENST00000486116 MYT1LQ9UL68 1186 aa16.61■□□□□ 0.25
PTPN7-213ENST00000486116 POLR1AO95602 1720 aaPredicted RBP16.61■□□□□ 0.25
PTPN7-213ENST00000486116 PKD2Q13563 968 aa16.6■□□□□ 0.25
PTPN7-213ENST00000486116 ABCC1P33527 1531 aa16.6■□□□□ 0.25
PTPN7-213ENST00000486116 CPS1P31327 1500 aa16.58■□□□□ 0.24
PTPN7-213ENST00000486116 LRRIQ1Q96JM4 1722 aa16.57■□□□□ 0.24
PTPN7-213ENST00000486116 PREX2Q70Z35 1606 aa16.57■□□□□ 0.24
PTPN7-213ENST00000486116 ZMYM3Q14202 1370 aa16.57■□□□□ 0.24
PTPN7-213ENST00000486116 PPP6R1Q9UPN7 881 aa16.56■□□□□ 0.24
PTPN7-213ENST00000486116 NEURL4Q96JN8 1562 aa16.55■□□□□ 0.24
PTPN7-213ENST00000486116 TOM1O60784 492 aa16.55■□□□□ 0.24
PTPN7-213ENST00000486116 DNMT1P26358 1616 aaKnown RBP16.54■□□□□ 0.24
PTPN7-213ENST00000486116 PTPRKQ15262 1439 aa16.53■□□□□ 0.24
PTPN7-213ENST00000486116 SHANK2Q9UPX8 1470 aa16.52■□□□□ 0.23
PTPN7-213ENST00000486116 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
PTPN7-213ENST00000486116 TROQ12816 1431 aaPredicted RBP16.51■□□□□ 0.23
PTPN7-213ENST00000486116 VWDEQ8N2E2 1590 aa16.51■□□□□ 0.23
PTPN7-213ENST00000486116 SAMD9LQ8IVG5 1584 aa16.5■□□□□ 0.23
PTPN7-213ENST00000486116 CDC42BPAQ5VT25 1732 aa16.5■□□□□ 0.23
PTPN7-213ENST00000486116 RGS17Q9UGC6 210 aaPredicted RBP16.49■□□□□ 0.23
PTPN7-213ENST00000486116 PLXNC1O60486 1568 aa16.48■□□□□ 0.23
PTPN7-213ENST00000486116 A2ML1A8K2U0 1454 aa16.48■□□□□ 0.23
PTPN7-213ENST00000486116 STRCP1A6NGW2 1772 aa16.47■□□□□ 0.23
PTPN7-213ENST00000486116 CLIP1P30622 1438 aa16.45■□□□□ 0.22
PTPN7-213ENST00000486116 SETD1AO15047 1707 aaKnown RBP16.45■□□□□ 0.22
PTPN7-213ENST00000486116 CDK11AQ9UQ88 783 aaPredicted RBP16.44■□□□□ 0.22
PTPN7-213ENST00000486116 RNF17Q9BXT8 1623 aaKnown RBP16.44■□□□□ 0.22
PTPN7-213ENST00000486116 SENP3Q9H4L4 574 aaPredicted RBP16.43■□□□□ 0.22
PTPN7-213ENST00000486116 ATP1B4Q9UN42 357 aaPredicted RBP16.43■□□□□ 0.22
PTPN7-213ENST00000486116 INO80Q9ULG1 1556 aaPredicted RBP16.43■□□□□ 0.22
PTPN7-213ENST00000486116 ATP7AQ04656 1500 aa16.41■□□□□ 0.22
PTPN7-213ENST00000486116 FMN1Q68DA7 1419 aa16.41■□□□□ 0.22
PTPN7-213ENST00000486116 SYCP2Q9BX26 1530 aa16.4■□□□□ 0.22
PTPN7-213ENST00000486116 SYNMO15061 1565 aa16.39■□□□□ 0.21
PTPN7-213ENST00000486116 DEPDC5O75140 1603 aa16.38■□□□□ 0.21
PTPN7-213ENST00000486116 IQGAP1P46940 1657 aa16.37■□□□□ 0.21
PTPN7-213ENST00000486116 A2MP01023 1474 aa16.37■□□□□ 0.21
PTPN7-213ENST00000486116 ADGBQ8N7X0 1667 aa16.37■□□□□ 0.21
PTPN7-213ENST00000486116 LRRC7Q96NW7 1537 aa16.36■□□□□ 0.21
PTPN7-213ENST00000486116 ARHGAP35Q9NRY4 1499 aa16.35■□□□□ 0.21
PTPN7-213ENST00000486116 POTEAQ6S8J7 498 aa16.35■□□□□ 0.21
PTPN7-213ENST00000486116 XIRP1Q702N8 1843 aaKnown RBP16.35■□□□□ 0.21
PTPN7-213ENST00000486116 MED14O60244 1454 aa16.35■□□□□ 0.21
PTPN7-213ENST00000486116 SPAG9O60271 1321 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms