RNA–Protein interactions for RNA: ENST00000486116.5

PTPN7-213, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 4

Gene PTPN7, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-213ENST00000486116 NISCHQ9Y2I1 1504 aa25.5■■□□□ 1.67
PTPN7-213ENST00000486116 ABCC9O60706 1549 aa23.94■■□□□ 1.42
PTPN7-213ENST00000486116 CCDC180Q9P1Z9 1646 aa23.3■■□□□ 1.32
PTPN7-213ENST00000486116 DNAJC5BQ9UF47 199 aa23.12■■□□□ 1.29
PTPN7-213ENST00000486116 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
PTPN7-213ENST00000486116 UNC13AQ9UPW8 1703 aa22.14■■□□□ 1.14
PTPN7-213ENST00000486116 NACADO15069 1562 aa22.12■■□□□ 1.13
PTPN7-213ENST00000486116 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.13
PTPN7-213ENST00000486116 BICRAQ9NZM4 1560 aa21.91■■□□□ 1.1
PTPN7-213ENST00000486116 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
PTPN7-213ENST00000486116 DCAF8L2P0C7V8 631 aa21.7■■□□□ 1.06
PTPN7-213ENST00000486116 CC2D2AQ9P2K1 1620 aa21.65■■□□□ 1.06
PTPN7-213ENST00000486116 CECR2Q9BXF3 1484 aa21.64■■□□□ 1.05
PTPN7-213ENST00000486116 MYO15BQ96JP2 1530 aa21.55■■□□□ 1.04
PTPN7-213ENST00000486116 SHROOM4Q9ULL8 1493 aa21.45■■□□□ 1.03
PTPN7-213ENST00000486116 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
PTPN7-213ENST00000486116 SCRIBQ14160 1630 aa21.15■□□□□ 0.98
PTPN7-213ENST00000486116 DCAF1Q9Y4B6 1507 aa21.02■□□□□ 0.96
PTPN7-213ENST00000486116 ZCCHC6Q5VYS8 1495 aaKnown RBP20.99■□□□□ 0.95
PTPN7-213ENST00000486116 CUX2O14529 1486 aa20.94■□□□□ 0.94
PTPN7-213ENST00000486116 ERCC6Q03468 1493 aa20.68■□□□□ 0.9
PTPN7-213ENST00000486116 TRIM41Q8WV44 630 aa20.45■□□□□ 0.86
PTPN7-213ENST00000486116 NCAPD3P42695 1498 aa20.4■□□□□ 0.86
PTPN7-213ENST00000486116 THOC2Q8NI27 1593 aaKnown RBP20.39■□□□□ 0.85
PTPN7-213ENST00000486116 NESP48681 1621 aa20.38■□□□□ 0.85
PTPN7-213ENST00000486116 ATAD2BQ9ULI0 1458 aa20.25■□□□□ 0.83
PTPN7-213ENST00000486116 HMGXB3Q12766 1538 aa20.23■□□□□ 0.83
PTPN7-213ENST00000486116 KIF21AQ7Z4S6 1674 aa20.19■□□□□ 0.82
PTPN7-213ENST00000486116 SMARCA2P51531 1590 aa20.17■□□□□ 0.82
PTPN7-213ENST00000486116 LAMC3Q9Y6N6 1575 aa20.11■□□□□ 0.81
PTPN7-213ENST00000486116 SMARCA4P51532 1647 aa20.1■□□□□ 0.81
PTPN7-213ENST00000486116 BAZ1BQ9UIG0 1483 aaKnown RBP20■□□□□ 0.79
PTPN7-213ENST00000486116 BAZ1AQ9NRL2 1556 aaPredicted RBP19.99■□□□□ 0.79
PTPN7-213ENST00000486116 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
PTPN7-213ENST00000486116 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
PTPN7-213ENST00000486116 WDR62O43379 1518 aa19.88■□□□□ 0.77
PTPN7-213ENST00000486116 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
PTPN7-213ENST00000486116 RIMBP3CA6NJZ7 1639 aa19.76■□□□□ 0.75
PTPN7-213ENST00000486116 RIMBP3BA6NNM3 1639 aa19.76■□□□□ 0.75
PTPN7-213ENST00000486116 RIMBP3Q9UFD9 1639 aa19.76■□□□□ 0.75
PTPN7-213ENST00000486116 OSCARQ8IYS5 282 aa19.75■□□□□ 0.75
PTPN7-213ENST00000486116 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
PTPN7-213ENST00000486116 MROH2BQ7Z745 1585 aa19.66■□□□□ 0.74
PTPN7-213ENST00000486116 CEP164Q9UPV0 1460 aa19.62■□□□□ 0.73
PTPN7-213ENST00000486116 ARHGEF11O15085 1522 aa19.56■□□□□ 0.72
PTPN7-213ENST00000486116 FANCD2Q9BXW9 1451 aa19.54■□□□□ 0.72
PTPN7-213ENST00000486116 URB2Q14146 1524 aaKnown RBP19.46■□□□□ 0.71
PTPN7-213ENST00000486116 WIZO95785 1651 aa19.43■□□□□ 0.7
PTPN7-213ENST00000486116 CFTRP13569 1480 aa19.37■□□□□ 0.69
PTPN7-213ENST00000486116 TRHP20396 242 aaPredicted RBP19.37■□□□□ 0.69
PTPN7-213ENST00000486116 CYB5RLQ6IPT4 315 aa19.36■□□□□ 0.69
PTPN7-213ENST00000486116 AEBP2Q6ZN18 517 aaPredicted RBP19.34■□□□□ 0.69
PTPN7-213ENST00000486116 ZNF608Q9ULD9 1512 aaPredicted RBP19.34■□□□□ 0.69
PTPN7-213ENST00000486116 ARAP1Q96P48 1450 aa19.33■□□□□ 0.68
PTPN7-213ENST00000486116 CHD1O14646 1710 aa19.3■□□□□ 0.68
PTPN7-213ENST00000486116 PRDM2Q13029 1718 aa19.3■□□□□ 0.68
PTPN7-213ENST00000486116 EIF4G3O43432 1585 aaKnown RBP19.25■□□□□ 0.67
PTPN7-213ENST00000486116 IFT140Q96RY7 1462 aa19.25■□□□□ 0.67
PTPN7-213ENST00000486116 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
PTPN7-213ENST00000486116 TOPBP1Q92547 1522 aa19.1■□□□□ 0.65
PTPN7-213ENST00000486116 TOP2AP11388 1531 aaKnown RBP19.09■□□□□ 0.65
PTPN7-213ENST00000486116 TARBP1Q13395 1621 aaKnown RBP19.06■□□□□ 0.64
PTPN7-213ENST00000486116 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.642e-7■■■■□ 23.6
PTPN7-213ENST00000486116 CLASP1Q7Z460 1538 aa19■□□□□ 0.63
PTPN7-213ENST00000486116 DNMBPQ6XZF7 1577 aa18.98■□□□□ 0.63
PTPN7-213ENST00000486116 FBLN2P98095 1184 aa18.97■□□□□ 0.63
PTPN7-213ENST00000486116 ABCC8Q09428 1581 aa18.95■□□□□ 0.62
PTPN7-213ENST00000486116 SYNJ1O43426 1573 aa18.87■□□□□ 0.61
PTPN7-213ENST00000486116 POLA1P09884 1462 aaPredicted RBP18.86■□□□□ 0.61
PTPN7-213ENST00000486116 CCDC88BA6NC98 1476 aa18.85■□□□□ 0.61
PTPN7-213ENST00000486116 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
PTPN7-213ENST00000486116 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
PTPN7-213ENST00000486116 GAPVD1Q14C86 1478 aa18.78■□□□□ 0.6
PTPN7-213ENST00000486116 TDRD9Q8NDG6 1382 aaKnown RBP18.77■□□□□ 0.6
PTPN7-213ENST00000486116 WDR97A6NE52 1622 aa18.76■□□□□ 0.59
PTPN7-213ENST00000486116 MAGI1Q96QZ7 1491 aaPredicted RBP18.73■□□□□ 0.59
PTPN7-213ENST00000486116 KIF13AQ9H1H9 1805 aa18.73■□□□□ 0.59
PTPN7-213ENST00000486116 SOGA1O94964 1423 aa18.7■□□□□ 0.58
PTPN7-213ENST00000486116 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
PTPN7-213ENST00000486116 ILDR1Q86SU0 546 aaPredicted RBP18.69■□□□□ 0.58
PTPN7-213ENST00000486116 SYNJ2O15056 1496 aa18.69■□□□□ 0.58
PTPN7-213ENST00000486116 PBRM1Q86U86 1689 aa18.66■□□□□ 0.58
PTPN7-213ENST00000486116 ERCC6L2Q5T890 1561 aa18.66■□□□□ 0.58
PTPN7-213ENST00000486116 GRIN2BQ13224 1484 aa18.65■□□□□ 0.58
PTPN7-213ENST00000486116 FGD5Q6ZNL6 1462 aa18.63■□□□□ 0.57
PTPN7-213ENST00000486116 CEP170Q5SW79 1584 aa18.52■□□□□ 0.56
PTPN7-213ENST00000486116 CUX1P39880 1505 aa18.52■□□□□ 0.56
PTPN7-213ENST00000486116 KDM4FA0A1W2PPD8 638 aa18.49■□□□□ 0.55
PTPN7-213ENST00000486116 SHROOM2Q13796 1616 aa18.49■□□□□ 0.55
PTPN7-213ENST00000486116 ABCA5Q8WWZ7 1642 aa18.49■□□□□ 0.55
PTPN7-213ENST00000486116 GRIN2AQ12879 1464 aa18.43■□□□□ 0.54
PTPN7-213ENST00000486116 KDM6BO15054 1643 aa18.4■□□□□ 0.54
PTPN7-213ENST00000486116 NUP160Q12769 1436 aa18.4■□□□□ 0.54
PTPN7-213ENST00000486116 ADAMTS12P58397 1594 aa18.38■□□□□ 0.53
PTPN7-213ENST00000486116 DIP2BQ9P265 1576 aa18.38■□□□□ 0.53
PTPN7-213ENST00000486116 ABCC10Q5T3U5 1492 aa18.37■□□□□ 0.53
PTPN7-213ENST00000486116 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
PTPN7-213ENST00000486116 TSPOAP1O95153 1857 aa18.34■□□□□ 0.53
PTPN7-213ENST00000486116 FAM69CQ0P6D2 419 aa18.32■□□□□ 0.52
PTPN7-213ENST00000486116 MAPKBP1O60336 1514 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms