RNA–Protein interactions for RNA: ENST00000486021.5

CPNE1-226, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-226ENST00000486021 ARHGEF40Q8TER5 1519 aa11.99□□□□□ -0.49
CPNE1-226ENST00000486021 PCF11O94913 1555 aaKnown RBP11.98□□□□□ -0.49
CPNE1-226ENST00000486021 ZFYVE16Q7Z3T8 1539 aa11.98□□□□□ -0.49
CPNE1-226ENST00000486021 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
CPNE1-226ENST00000486021 FRMPD1Q5SYB0 1578 aa11.97□□□□□ -0.49
CPNE1-226ENST00000486021 CDC42BPBQ9Y5S2 1711 aa11.97□□□□□ -0.49
CPNE1-226ENST00000486021 ADAMTSL3P82987 1691 aa11.97□□□□□ -0.49
CPNE1-226ENST00000486021 ZNF518AQ6AHZ1 1483 aa11.96□□□□□ -0.49
CPNE1-226ENST00000486021 SCAPERQ9BY12 1400 aa11.96□□□□□ -0.49
CPNE1-226ENST00000486021 PREX2Q70Z35 1606 aa11.96□□□□□ -0.5
CPNE1-226ENST00000486021 CDC42BPAQ5VT25 1732 aa11.94□□□□□ -0.5
CPNE1-226ENST00000486021 FER1L4A9Z1Z3 1794 aa11.92□□□□□ -0.5
CPNE1-226ENST00000486021 ITSN2Q9NZM3 1697 aa11.92□□□□□ -0.5
CPNE1-226ENST00000486021 HECW2Q9P2P5 1572 aa11.92□□□□□ -0.5
CPNE1-226ENST00000486021 RIMS1Q86UR5 1692 aaKnown RBP11.91□□□□□ -0.5
CPNE1-226ENST00000486021 ATP10AO60312 1499 aa11.91□□□□□ -0.5
CPNE1-226ENST00000486021 C9orf84Q5VXU9 1444 aa11.91□□□□□ -0.5
CPNE1-226ENST00000486021 MTUS2Q5JR59 1369 aa11.91□□□□□ -0.5
CPNE1-226ENST00000486021 PTPRMP28827 1452 aa11.9□□□□□ -0.5
CPNE1-226ENST00000486021 PLEKHH2Q8IVE3 1493 aa11.9□□□□□ -0.5
CPNE1-226ENST00000486021 MADDQ8WXG6 1647 aa11.9□□□□□ -0.5
CPNE1-226ENST00000486021 ESF1Q9H501 851 aaKnown RBP11.9□□□□□ -0.5
CPNE1-226ENST00000486021 KDM5CP41229 1560 aa11.88□□□□□ -0.51
CPNE1-226ENST00000486021 SETD1BQ9UPS6 1966 aaKnown RBP11.88□□□□□ -0.51
CPNE1-226ENST00000486021 CCNB3Q8WWL7 1395 aa11.87□□□□□ -0.51
CPNE1-226ENST00000486021 REREQ9P2R6 1566 aa11.87□□□□□ -0.51
CPNE1-226ENST00000486021 ABCC1P33527 1531 aa11.86□□□□□ -0.51
CPNE1-226ENST00000486021 EHBP1L1Q8N3D4 1523 aa11.86□□□□□ -0.51
CPNE1-226ENST00000486021 SUPT6HQ7KZ85 1726 aaKnown RBP11.86□□□□□ -0.51
CPNE1-226ENST00000486021 MLH3Q9UHC1 1453 aa11.86□□□□□ -0.51
CPNE1-226ENST00000486021 CEP162Q5TB80 1403 aa11.86□□□□□ -0.51
CPNE1-226ENST00000486021 YEATS2Q9ULM3 1422 aa11.85□□□□□ -0.51
CPNE1-226ENST00000486021 CFDP1Q9UEE9 299 aaPredicted RBP11.84□□□□□ -0.51
CPNE1-226ENST00000486021 ZNF777Q9ULD5 760 aaPredicted RBP11.84□□□□□ -0.51
CPNE1-226ENST00000486021 PREX1Q8TCU6 1659 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 APLP2Q06481 763 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 MLECQ14165 292 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 RSPH4AQ5TD94 716 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 AFAP1Q8N556 730 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 KIAA1107Q9UPP5 1409 aa11.82□□□□□ -0.52
CPNE1-226ENST00000486021 ADGBQ8N7X0 1667 aa11.81□□□□□ -0.52
CPNE1-226ENST00000486021 DIP2CQ9Y2E4 1556 aa11.81□□□□□ -0.52
CPNE1-226ENST00000486021 KIDINS220Q9ULH0 1771 aa11.81□□□□□ -0.52
CPNE1-226ENST00000486021 AGLP35573 1532 aa11.81□□□□□ -0.52
CPNE1-226ENST00000486021 ARHGEF12Q9NZN5 1544 aa11.81□□□□□ -0.52
CPNE1-226ENST00000486021 GPATCH8Q9UKJ3 1502 aaKnown RBP11.81□□□□□ -0.52
CPNE1-226ENST00000486021 SAMD9LQ8IVG5 1584 aa11.8□□□□□ -0.52
CPNE1-226ENST00000486021 ABCA6Q8N139 1617 aa11.8□□□□□ -0.52
CPNE1-226ENST00000486021 SPAG9O60271 1321 aaKnown RBP11.8□□□□□ -0.52
CPNE1-226ENST00000486021 CNTLNQ9NXG0 1405 aa11.79□□□□□ -0.52
CPNE1-226ENST00000486021 SYCP2Q9BX26 1530 aa11.79□□□□□ -0.52
CPNE1-226ENST00000486021 MROH2AA6NES4 1674 aa11.78□□□□□ -0.52
CPNE1-226ENST00000486021 SIGLEC1Q9BZZ2 1709 aa11.77□□□□□ -0.52
CPNE1-226ENST00000486021 ATP7AQ04656 1500 aa11.77□□□□□ -0.52
CPNE1-226ENST00000486021 TIAM1Q13009 1591 aa11.77□□□□□ -0.53
CPNE1-226ENST00000486021 PPP6R1Q9UPN7 881 aa11.77□□□□□ -0.53
CPNE1-226ENST00000486021 VPS8Q8N3P4 1428 aa11.77□□□□□ -0.53
CPNE1-226ENST00000486021 TRAPPC8Q9Y2L5 1435 aa11.77□□□□□ -0.53
CPNE1-226ENST00000486021 PLPPR3Q6T4P5 718 aa11.76□□□□□ -0.53
CPNE1-226ENST00000486021 DMRT2Q9Y5R5 561 aa11.76□□□□□ -0.53
CPNE1-226ENST00000486021 MAP3K1Q13233 1512 aa11.76□□□□□ -0.53
CPNE1-226ENST00000486021 HNRNPMP52272 730 aaKnown RBP eCLIP11.75□□□□□ -0.53
CPNE1-226ENST00000486021 UHRF1BP1Q6BDS2 1440 aa11.75□□□□□ -0.53
CPNE1-226ENST00000486021 C3P01024 1663 aa11.75□□□□□ -0.53
CPNE1-226ENST00000486021 TSPY4P0CV99 314 aa11.74□□□□□ -0.53
CPNE1-226ENST00000486021 TSPY10P0CW01 314 aa11.74□□□□□ -0.53
CPNE1-226ENST00000486021 RTEL1-TNFRSF6BF6WH68 1400 aa11.74□□□□□ -0.53
CPNE1-226ENST00000486021 INO80Q9ULG1 1556 aaPredicted RBP11.74□□□□□ -0.53
CPNE1-226ENST00000486021 LMTK3Q96Q04 1460 aa11.73□□□□□ -0.53
CPNE1-226ENST00000486021 A2MP01023 1474 aa11.72□□□□□ -0.53
CPNE1-226ENST00000486021 NCOA2Q15596 1464 aa11.72□□□□□ -0.53
CPNE1-226ENST00000486021 CCDC141Q6ZP82 1450 aa11.7□□□□□ -0.54
CPNE1-226ENST00000486021 ARHGEF5Q12774 1597 aa11.7□□□□□ -0.54
CPNE1-226ENST00000486021 FAM135AQ9P2D6 1515 aa11.7□□□□□ -0.54
CPNE1-226ENST00000486021 LRRC9Q6ZRR7 1453 aa11.7□□□□□ -0.54
CPNE1-226ENST00000486021 CLTCQ00610 1675 aaKnown RBP11.69□□□□□ -0.54
CPNE1-226ENST00000486021 LOC105371045A0A1W2PR82 267 aa11.69□□□□□ -0.54
CPNE1-226ENST00000486021 CAMSAP2Q08AD1 1489 aa11.69□□□□□ -0.54
CPNE1-226ENST00000486021 PLXNC1O60486 1568 aa11.68□□□□□ -0.54
CPNE1-226ENST00000486021 NPATQ14207 1427 aa11.68□□□□□ -0.54
CPNE1-226ENST00000486021 MIA2Q96PC5 1412 aa11.68□□□□□ -0.54
CPNE1-226ENST00000486021 GGT6Q6P531 493 aa11.67□□□□□ -0.54
CPNE1-226ENST00000486021 DHX29Q7Z478 1369 aaKnown RBP11.66□□□□□ -0.54
CPNE1-226ENST00000486021 MBD5Q9P267 1494 aa11.65□□□□□ -0.54
CPNE1-226ENST00000486021 CEBPAP49715 358 aaPredicted RBP11.65□□□□□ -0.54
CPNE1-226ENST00000486021 FBXO41Q8TF61 875 aa11.65□□□□□ -0.54
CPNE1-226ENST00000486021 ZMYM3Q14202 1370 aa11.65□□□□□ -0.55
CPNE1-226ENST00000486021 MYOM3Q5VTT5 1437 aa11.64□□□□□ -0.55
CPNE1-226ENST00000486021 HSPA2P54652 639 aa11.64□□□□□ -0.55
CPNE1-226ENST00000486021 ILDR1Q86SU0 546 aaPredicted RBP11.64□□□□□ -0.55
CPNE1-226ENST00000486021 MAST1Q9Y2H9 1570 aa11.63□□□□□ -0.55
CPNE1-226ENST00000486021 ZC3H13Q5T200 1668 aaKnown RBP11.63□□□□□ -0.55
CPNE1-226ENST00000486021 EIF2AK4Q9P2K8 1649 aaKnown RBP11.63□□□□□ -0.55
CPNE1-226ENST00000486021 ZNF644Q9H582 1327 aaPredicted RBP11.62□□□□□ -0.55
CPNE1-226ENST00000486021 ZNF142P52746 1687 aaPredicted RBP11.62□□□□□ -0.55
CPNE1-226ENST00000486021 KIF3BO15066 747 aa11.62□□□□□ -0.55
CPNE1-226ENST00000486021 STRCQ7RTU9 1775 aa11.61□□□□□ -0.55
CPNE1-226ENST00000486021 WASHC2CQ9Y4E1 1318 aa11.6□□□□□ -0.55
CPNE1-226ENST00000486021 KDM5DQ9BY66 1539 aa11.6□□□□□ -0.55
CPNE1-226ENST00000486021 PTPN23Q9H3S7 1636 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms