RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PLCH2O75038 1416 aa11.99□□□□□ -0.49
USP4-211ENST00000485450 CYB5RLQ6IPT4 315 aa11.99□□□□□ -0.49
USP4-211ENST00000485450 ARHGEF40Q8TER5 1519 aa11.97□□□□□ -0.49
USP4-211ENST00000485450 PLXNC1O60486 1568 aa11.96□□□□□ -0.49
USP4-211ENST00000485450 KDM6BO15054 1643 aa11.95□□□□□ -0.5
USP4-211ENST00000485450 ADGBQ8N7X0 1667 aa11.95□□□□□ -0.5
USP4-211ENST00000485450 SIGLEC1Q9BZZ2 1709 aa11.95□□□□□ -0.5
USP4-211ENST00000485450 GPATCH8Q9UKJ3 1502 aaKnown RBP11.94□□□□□ -0.5
USP4-211ENST00000485450 TSPOAP1O95153 1857 aa11.94□□□□□ -0.5
USP4-211ENST00000485450 MAGI2Q86UL8 1455 aa11.94□□□□□ -0.5
USP4-211ENST00000485450 KIAA1107Q9UPP5 1409 aa11.94□□□□□ -0.5
USP4-211ENST00000485450 FAM135AQ9P2D6 1515 aa11.94□□□□□ -0.5
USP4-211ENST00000485450 KIDINS220Q9ULH0 1771 aa11.93□□□□□ -0.5
USP4-211ENST00000485450 EIF2AK4Q9P2K8 1649 aaKnown RBP11.91□□□□□ -0.5
USP4-211ENST00000485450 MIA2Q96PC5 1412 aa11.91□□□□□ -0.5
USP4-211ENST00000485450 DNMT1P26358 1616 aaKnown RBP11.91□□□□□ -0.5
USP4-211ENST00000485450 HECW2Q9P2P5 1572 aa11.91□□□□□ -0.5
USP4-211ENST00000485450 SHANK2Q9UPX8 1470 aa11.9□□□□□ -0.5
USP4-211ENST00000485450 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.9□□□□□ -0.5
USP4-211ENST00000485450 PLEKHH2Q8IVE3 1493 aa11.9□□□□□ -0.5
USP4-211ENST00000485450 COL17A1Q9UMD9 1497 aaPredicted RBP11.9□□□□□ -0.5
USP4-211ENST00000485450 CD109Q6YHK3 1445 aa11.9□□□□□ -0.5
USP4-211ENST00000485450 MBD5Q9P267 1494 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 DEPDC5O75140 1603 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 AGLP35573 1532 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 ARHGEF12Q9NZN5 1544 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 NCOA2Q15596 1464 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 MLH3Q9UHC1 1453 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 POGZQ7Z3K3 1410 aa11.89□□□□□ -0.51
USP4-211ENST00000485450 ABCA6Q8N139 1617 aa11.88□□□□□ -0.51
USP4-211ENST00000485450 ADAMTSL3P82987 1691 aa11.88□□□□□ -0.51
USP4-211ENST00000485450 ZFYVE16Q7Z3T8 1539 aa11.88□□□□□ -0.51
USP4-211ENST00000485450 MROH2AA6NES4 1674 aa11.88□□□□□ -0.51
USP4-211ENST00000485450 DIP2CQ9Y2E4 1556 aa11.88□□□□□ -0.51
USP4-211ENST00000485450 RNF17Q9BXT8 1623 aaKnown RBP11.87□□□□□ -0.51
USP4-211ENST00000485450 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
USP4-211ENST00000485450 FANCAO15360 1455 aa11.87□□□□□ -0.51
USP4-211ENST00000485450 PTPN23Q9H3S7 1636 aa11.86□□□□□ -0.51
USP4-211ENST00000485450 RTEL1-TNFRSF6BF6WH68 1400 aa11.84□□□□□ -0.51
USP4-211ENST00000485450 AKNAQ7Z591 1439 aa11.84□□□□□ -0.51
USP4-211ENST00000485450 ADGRL2O95490 1459 aa11.84□□□□□ -0.51
USP4-211ENST00000485450 ZNF518AQ6AHZ1 1483 aa11.83□□□□□ -0.52
USP4-211ENST00000485450 ACIN1Q9UKV3 1341 aaKnown RBP11.83□□□□□ -0.52
USP4-211ENST00000485450 ZC3H13Q5T200 1668 aaKnown RBP11.82□□□□□ -0.52
USP4-211ENST00000485450 NEUROD1Q13562 356 aa11.82□□□□□ -0.52
USP4-211ENST00000485450 MYOM3Q5VTT5 1437 aa11.82□□□□□ -0.52
USP4-211ENST00000485450 CAMSAP2Q08AD1 1489 aa11.81□□□□□ -0.52
USP4-211ENST00000485450 GCC2Q8IWJ2 1684 aa11.81□□□□□ -0.52
USP4-211ENST00000485450 AEBP2Q6ZN18 517 aaPredicted RBP11.81□□□□□ -0.52
USP4-211ENST00000485450 VWDEQ8N2E2 1590 aa11.8□□□□□ -0.52
USP4-211ENST00000485450 RRBP1Q9P2E9 1410 aaKnown RBP11.8□□□□□ -0.52
USP4-211ENST00000485450 NPM1P06748 294 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP4-211ENST00000485450 SYCP2Q9BX26 1530 aa11.8□□□□□ -0.52
USP4-211ENST00000485450 MROH1Q8NDA8 1641 aa11.79□□□□□ -0.52
USP4-211ENST00000485450 ARHGAP5Q13017 1502 aa11.79□□□□□ -0.52
USP4-211ENST00000485450 KDM5DQ9BY66 1539 aa11.79□□□□□ -0.52
USP4-211ENST00000485450 LOC105371045A0A1W2PR82 267 aa11.79□□□□□ -0.52
USP4-211ENST00000485450 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
USP4-211ENST00000485450 DENND4BO75064 1496 aaPredicted RBP11.78□□□□□ -0.52
USP4-211ENST00000485450 ADGRL1O94910 1474 aa11.78□□□□□ -0.52
USP4-211ENST00000485450 ATP7AQ04656 1500 aa11.78□□□□□ -0.52
USP4-211ENST00000485450 ERICH6Q7L0X2 663 aa11.78□□□□□ -0.52
USP4-211ENST00000485450 UNC13BO14795 1591 aa11.77□□□□□ -0.53
USP4-211ENST00000485450 CDK11AQ9UQ88 783 aaPredicted RBP11.76□□□□□ -0.53
USP4-211ENST00000485450 PLEKHD1A6NEE1 506 aa11.76□□□□□ -0.53
USP4-211ENST00000485450 P3H3Q8IVL6 736 aa11.76□□□□□ -0.53
USP4-211ENST00000485450 CCDC141Q6ZP82 1450 aa11.75□□□□□ -0.53
USP4-211ENST00000485450 FGD6Q6ZV73 1430 aa11.74□□□□□ -0.53
USP4-211ENST00000485450 FAM69CQ0P6D2 419 aa11.74□□□□□ -0.53
USP4-211ENST00000485450 PRDM15P57071 1507 aaPredicted RBP11.74□□□□□ -0.53
USP4-211ENST00000485450 GTF3C3Q9Y5Q9 886 aa11.73□□□□□ -0.53
USP4-211ENST00000485450 KDM5AP29375 1690 aaKnown RBP11.73□□□□□ -0.53
USP4-211ENST00000485450 LMTK2Q8IWU2 1503 aa11.72□□□□□ -0.53
USP4-211ENST00000485450 ZNF142P52746 1687 aaPredicted RBP11.72□□□□□ -0.53
USP4-211ENST00000485450 TRIM26Q12899 539 aaPredicted RBP11.71□□□□□ -0.54
USP4-211ENST00000485450 TRAPPC8Q9Y2L5 1435 aa11.71□□□□□ -0.54
USP4-211ENST00000485450 C9orf84Q5VXU9 1444 aa11.7□□□□□ -0.54
USP4-211ENST00000485450 FER1L4A9Z1Z3 1794 aa11.7□□□□□ -0.54
USP4-211ENST00000485450 ATP10AO60312 1499 aa11.7□□□□□ -0.54
USP4-211ENST00000485450 MTUS2Q5JR59 1369 aa11.7□□□□□ -0.54
USP4-211ENST00000485450 DUOX2Q9NRD8 1548 aa11.69□□□□□ -0.54
USP4-211ENST00000485450 ROCK1Q13464 1354 aa11.68□□□□□ -0.54
USP4-211ENST00000485450 IQGAP3Q86VI3 1631 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 CCNB3Q8WWL7 1395 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 DAPK1P53355 1430 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 ERBINQ96RT1 1412 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 SCAPERQ9BY12 1400 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 ABCC5O15440 1437 aa11.67□□□□□ -0.54
USP4-211ENST00000485450 CENPBP07199 599 aaPredicted RBP11.66□□□□□ -0.54
USP4-211ENST00000485450 KANK4Q5T7N3 995 aaPredicted RBP11.66□□□□□ -0.54
USP4-211ENST00000485450 RSPH4AQ5TD94 716 aa11.65□□□□□ -0.54
USP4-211ENST00000485450 C3P01024 1663 aa11.65□□□□□ -0.54
USP4-211ENST00000485450 EFCAB2Q5VUJ9 269 aa11.63□□□□□ -0.55
USP4-211ENST00000485450 NEURL4Q96JN8 1562 aa11.63□□□□□ -0.55
USP4-211ENST00000485450 CAMSAP1Q5T5Y3 1602 aa11.63□□□□□ -0.55
USP4-211ENST00000485450 YEATS2Q9ULM3 1422 aa11.62□□□□□ -0.55
USP4-211ENST00000485450 MADDQ8WXG6 1647 aa11.62□□□□□ -0.55
USP4-211ENST00000485450 PIK3C2BO00750 1634 aa11.62□□□□□ -0.55
USP4-211ENST00000485450 TET3O43151 1660 aa11.61□□□□□ -0.55
USP4-211ENST00000485450 PREX1Q8TCU6 1659 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms