RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PRG4Q92954 1404 aaPredicted RBP18.33■□□□□ 0.52
USP40-214ENST00000483519 CARMIL2Q6F5E8 1435 aa18.32■□□□□ 0.52
USP40-214ENST00000483519 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
USP40-214ENST00000483519 KDM5BQ9UGL1 1544 aa18.32■□□□□ 0.52
USP40-214ENST00000483519 HECW1Q76N89 1606 aa18.3■□□□□ 0.52
USP40-214ENST00000483519 NAIPQ13075 1403 aa18.29■□□□□ 0.52
USP40-214ENST00000483519 NCOA2Q15596 1464 aa18.29■□□□□ 0.52
USP40-214ENST00000483519 MTUS2Q5JR59 1369 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 RIMBP3CA6NJZ7 1639 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 RIMBP3BA6NNM3 1639 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 RIMBP3Q9UFD9 1639 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 PTPRKQ15262 1439 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 EHBP1L1Q8N3D4 1523 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 WASHC2AQ641Q2 1341 aa18.28■□□□□ 0.52
USP40-214ENST00000483519 CNTLNQ9NXG0 1405 aa18.27■□□□□ 0.51
USP40-214ENST00000483519 HSPA5P11021 654 aaKnown RBP18.24■□□□□ 0.51
USP40-214ENST00000483519 MYOM3Q5VTT5 1437 aa18.24■□□□□ 0.51
USP40-214ENST00000483519 EIF4G2P78344 907 aaKnown RBP eCLIP18.22■□□□□ 0.51
USP40-214ENST00000483519 KIAA0556O60303 1618 aa18.22■□□□□ 0.51
USP40-214ENST00000483519 DISP1Q96F81 1524 aa18.22■□□□□ 0.51
USP40-214ENST00000483519 LRRIQ1Q96JM4 1722 aa18.22■□□□□ 0.51
USP40-214ENST00000483519 ERCC6L2Q5T890 1561 aa18.21■□□□□ 0.51
USP40-214ENST00000483519 SUPT6HQ7KZ85 1726 aaKnown RBP18.21■□□□□ 0.51
USP40-214ENST00000483519 ZBED9Q6R2W3 1325 aa18.2■□□□□ 0.5
USP40-214ENST00000483519 GCC2Q8IWJ2 1684 aa18.18■□□□□ 0.5
USP40-214ENST00000483519 PTPRGP23470 1445 aa18.17■□□□□ 0.5
USP40-214ENST00000483519 CYB5RLQ6IPT4 315 aa18.15■□□□□ 0.5
USP40-214ENST00000483519 PRKRIP1Q9H875 184 aaPredicted RBP18.15■□□□□ 0.5
USP40-214ENST00000483519 DEKP35659 375 aaKnown RBP18.15■□□□□ 0.5
USP40-214ENST00000483519 B4GALNT3Q6L9W6 998 aa18.15■□□□□ 0.5
USP40-214ENST00000483519 NCOA1Q15788 1441 aa18.15■□□□□ 0.5
USP40-214ENST00000483519 MRS2Q9HD23 443 aa18.14■□□□□ 0.49
USP40-214ENST00000483519 AKNAQ7Z591 1439 aa18.13■□□□□ 0.49
USP40-214ENST00000483519 CCDC7Q96M83 1385 aa18.13■□□□□ 0.49
USP40-214ENST00000483519 CCDC184Q52MB2 194 aa18.13■□□□□ 0.49
USP40-214ENST00000483519 FAM9BQ8IZU0 186 aa18.13■□□□□ 0.49
USP40-214ENST00000483519 NOP58Q9Y2X3 529 aaKnown RBP18.13■□□□□ 0.49
USP40-214ENST00000483519 TCOF1Q13428 1488 aaKnown RBP18.12■□□□□ 0.49
USP40-214ENST00000483519 DENND4BO75064 1496 aaPredicted RBP18.1■□□□□ 0.49
USP40-214ENST00000483519 EPRSP07814 1512 aaKnown RBP18.09■□□□□ 0.49
USP40-214ENST00000483519 RAPGEF6Q8TEU7 1601 aa18.09■□□□□ 0.49
USP40-214ENST00000483519 MIA2Q96PC5 1412 aa18.08■□□□□ 0.48
USP40-214ENST00000483519 POLR1AO95602 1720 aaPredicted RBP18.08■□□□□ 0.48
USP40-214ENST00000483519 RRP7BPQ9NSQ0 103 aa18.07■□□□□ 0.48
USP40-214ENST00000483519 ADCY10Q96PN6 1610 aa18.06■□□□□ 0.48
USP40-214ENST00000483519 SMG6Q86US8 1419 aaKnown RBP18.05■□□□□ 0.48
USP40-214ENST00000483519 L3MBTL2Q969R5 705 aa18.05■□□□□ 0.48
USP40-214ENST00000483519 EIF5BO60841 1220 aaKnown RBP18.04■□□□□ 0.48
USP40-214ENST00000483519 C11orf95C9JLR9 678 aaPredicted RBP18.04■□□□□ 0.48
USP40-214ENST00000483519 UHRF1BP1LA0JNW5 1464 aa18.03■□□□□ 0.48
USP40-214ENST00000483519 MPHOSPH9Q99550 1183 aa18.03■□□□□ 0.48
USP40-214ENST00000483519 NPM1P06748 294 aaKnown RBP eCLIP18.02■□□□□ 0.48
USP40-214ENST00000483519 KDM6BO15054 1643 aa18.01■□□□□ 0.47
USP40-214ENST00000483519 ANP32AP39687 249 aaKnown RBP18.01■□□□□ 0.47
USP40-214ENST00000483519 CHIC2Q9UKJ5 165 aa18.01■□□□□ 0.47
USP40-214ENST00000483519 ABCC2Q92887 1545 aa18■□□□□ 0.47
USP40-214ENST00000483519 RPRD2Q5VT52 1461 aaKnown RBP18■□□□□ 0.47
USP40-214ENST00000483519 ABCA8O94911 1581 aa18■□□□□ 0.47
USP40-214ENST00000483519 NBR1Q14596 966 aa18■□□□□ 0.47
USP40-214ENST00000483519 MAGI3Q5TCQ9 1506 aa17.99■□□□□ 0.47
USP40-214ENST00000483519 KIF7Q2M1P5 1343 aa17.99■□□□□ 0.47
USP40-214ENST00000483519 PLB1Q6P1J6 1458 aa17.98■□□□□ 0.47
USP40-214ENST00000483519 PAK3O75914 559 aaPredicted RBP17.98■□□□□ 0.47
USP40-214ENST00000483519 SPATA31E1Q6ZUB1 1445 aa17.98■□□□□ 0.47
USP40-214ENST00000483519 NUDCQ9Y266 331 aa17.98■□□□□ 0.47
USP40-214ENST00000483519 TEX14Q8IWB6 1497 aa17.97■□□□□ 0.47
USP40-214ENST00000483519 RNF123Q5XPI4 1314 aa17.97■□□□□ 0.47
USP40-214ENST00000483519 CCDC136Q96JN2 1154 aa17.97■□□□□ 0.47
USP40-214ENST00000483519 IPO9Q96P70 1041 aaKnown RBP17.97■□□□□ 0.47
USP40-214ENST00000483519 NUP153P49790 1475 aaKnown RBP17.96■□□□□ 0.47
USP40-214ENST00000483519 ARXQ96QS3 562 aa17.95■□□□□ 0.46
USP40-214ENST00000483519 ITSN2Q9NZM3 1697 aa17.95■□□□□ 0.46
USP40-214ENST00000483519 RTL5Q5HYW3 569 aaPredicted RBP17.95■□□□□ 0.46
USP40-214ENST00000483519 ANKRD30BQ9BXX2 1392 aa17.94■□□□□ 0.46
USP40-214ENST00000483519 NBPF8Q3BBV2 869 aa17.93■□□□□ 0.46
USP40-214ENST00000483519 ZBTB47Q9UFB7 747 aaPredicted RBP17.92■□□□□ 0.46
USP40-214ENST00000483519 FOXD1Q16676 465 aa17.91■□□□□ 0.46
USP40-214ENST00000483519 ROCK1Q13464 1354 aa17.9■□□□□ 0.46
USP40-214ENST00000483519 DHX29Q7Z478 1369 aaKnown RBP17.88■□□□□ 0.45
USP40-214ENST00000483519 TROQ12816 1431 aaPredicted RBP17.88■□□□□ 0.45
USP40-214ENST00000483519 CDK13Q14004 1512 aaKnown RBP17.86■□□□□ 0.45
USP40-214ENST00000483519 DNMT1P26358 1616 aaKnown RBP17.86■□□□□ 0.45
USP40-214ENST00000483519 ZCCHC11Q5TAX3 1644 aaKnown RBP17.85■□□□□ 0.45
USP40-214ENST00000483519 ATP10BO94823 1461 aa17.85■□□□□ 0.45
USP40-214ENST00000483519 DAPK1P53355 1430 aa17.85■□□□□ 0.45
USP40-214ENST00000483519 ARID4BQ4LE39 1312 aaPredicted RBP17.84■□□□□ 0.45
USP40-214ENST00000483519 SLC4A1APQ9BWU0 796 aaKnown RBP17.82■□□□□ 0.44
USP40-214ENST00000483519 ASXL2Q76L83 1435 aa17.8■□□□□ 0.44
USP40-214ENST00000483519 MBD5Q9P267 1494 aa17.8■□□□□ 0.44
USP40-214ENST00000483519 ARID3CA6NKF2 412 aa17.8■□□□□ 0.44
USP40-214ENST00000483519 USP47Q96K76 1375 aa17.8■□□□□ 0.44
USP40-214ENST00000483519 AMER1Q5JTC6 1135 aaPredicted RBP17.8■□□□□ 0.44
USP40-214ENST00000483519 ROCK2O75116 1388 aaKnown RBP17.8■□□□□ 0.44
USP40-214ENST00000483519 KIF14Q15058 1648 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 PLEKHD1A6NEE1 506 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 KLHL34Q8N239 644 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 ADGBQ8N7X0 1667 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 BCORL1Q5H9F3 1711 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 CROCC2H7BZ55 1655 aa17.79■□□□□ 0.44
USP40-214ENST00000483519 PNISRQ8TF01 805 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms