RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 KIF3BO15066 747 aa15.08■□□□□ 0
SMPD4-218ENST00000482171 KNSTRNQ9Y448 316 aa15.07■□□□□ 0
SMPD4-218ENST00000482171 TNNT2P45379 298 aaPredicted RBP15.06■□□□□ 0
SMPD4-218ENST00000482171 CASKIN1Q8WXD9 1431 aa15.05■□□□□ 0
SMPD4-218ENST00000482171 MRC2Q9UBG0 1479 aa15.05■□□□□ -0
SMPD4-218ENST00000482171 SAFB2Q14151 953 aaKnown RBP eCLIP15.04■□□□□ -0
SMPD4-218ENST00000482171 DNMBPQ6XZF7 1577 aa15.04■□□□□ -0
SMPD4-218ENST00000482171 MYOM3Q5VTT5 1437 aa15.03■□□□□ -0
SMPD4-218ENST00000482171 SPAG9O60271 1321 aaKnown RBP15.03■□□□□ -0
SMPD4-218ENST00000482171 NCOA2Q15596 1464 aa15.02□□□□□ -0.01
SMPD4-218ENST00000482171 PRDM2Q13029 1718 aa15.01□□□□□ -0.01
SMPD4-218ENST00000482171 CCER2I3L3R5 266 aa15.01□□□□□ -0.01
SMPD4-218ENST00000482171 KANK1Q14678 1352 aa15.01□□□□□ -0.01
SMPD4-218ENST00000482171 NEUROD2Q15784 382 aa15□□□□□ -0.01
SMPD4-218ENST00000482171 RTN4Q9NQC3 1192 aaKnown RBP15□□□□□ -0.01
SMPD4-218ENST00000482171 CYB5RLQ6IPT4 315 aa14.99□□□□□ -0.01
SMPD4-218ENST00000482171 PPM1GO15355 546 aaPredicted RBP14.99□□□□□ -0.01
SMPD4-218ENST00000482171 CDCA8Q53HL2 280 aa14.98□□□□□ -0.01
SMPD4-218ENST00000482171 TMF1P82094 1093 aa14.98□□□□□ -0.01
SMPD4-218ENST00000482171 ABCA10Q8WWZ4 1543 aa14.98□□□□□ -0.01
SMPD4-218ENST00000482171 NUTM2DQ5VT03 806 aaPredicted RBP14.98□□□□□ -0.01
SMPD4-218ENST00000482171 TRHP20396 242 aaPredicted RBP14.97□□□□□ -0.01
SMPD4-218ENST00000482171 POGKQ9P215 609 aa14.97□□□□□ -0.01
SMPD4-218ENST00000482171 RRBP1Q9P2E9 1410 aaKnown RBP14.97□□□□□ -0.01
SMPD4-218ENST00000482171 ROCK2O75116 1388 aaKnown RBP14.97□□□□□ -0.01
SMPD4-218ENST00000482171 SNAPC4Q5SXM2 1469 aa14.97□□□□□ -0.01
SMPD4-218ENST00000482171 B4GALNT3Q6L9W6 998 aa14.97□□□□□ -0.01
SMPD4-218ENST00000482171 DEKP35659 375 aaKnown RBP14.96□□□□□ -0.01
SMPD4-218ENST00000482171 STK26Q9P289 416 aa14.96□□□□□ -0.01
SMPD4-218ENST00000482171 FYCO1Q9BQS8 1478 aa14.96□□□□□ -0.02
SMPD4-218ENST00000482171 RSPH4AQ5TD94 716 aa14.95□□□□□ -0.02
SMPD4-218ENST00000482171 URB2Q14146 1524 aaKnown RBP14.95□□□□□ -0.02
SMPD4-218ENST00000482171 IFT140Q96RY7 1462 aa14.95□□□□□ -0.02
SMPD4-218ENST00000482171 OSCARQ8IYS5 282 aa14.94□□□□□ -0.02
SMPD4-218ENST00000482171 C14orf37Q86TY3 774 aa14.93□□□□□ -0.02
SMPD4-218ENST00000482171 ST20-MTHFSA0A0A6YYL1 179 aa14.92□□□□□ -0.02
SMPD4-218ENST00000482171 PPP4R2Q9NY27 417 aa14.92□□□□□ -0.02
SMPD4-218ENST00000482171 LAMC3Q9Y6N6 1575 aa14.92□□□□□ -0.02
SMPD4-218ENST00000482171 PRG4Q92954 1404 aaPredicted RBP14.92□□□□□ -0.02
SMPD4-218ENST00000482171 NOP58Q9Y2X3 529 aaKnown RBP14.92□□□□□ -0.02
SMPD4-218ENST00000482171 ZBTB7CA1YPR0 619 aa14.91□□□□□ -0.02
SMPD4-218ENST00000482171 TIAM1Q13009 1591 aa14.91□□□□□ -0.02
SMPD4-218ENST00000482171 EFCAB5A4FU69 1503 aa14.88□□□□□ -0.03
SMPD4-218ENST00000482171 ZNF608Q9ULD9 1512 aaPredicted RBP14.88□□□□□ -0.03
SMPD4-218ENST00000482171 WASHC2CQ9Y4E1 1318 aa14.88□□□□□ -0.03
SMPD4-218ENST00000482171 ARXQ96QS3 562 aa14.88□□□□□ -0.03
SMPD4-218ENST00000482171 UACAQ9BZF9 1416 aa14.88□□□□□ -0.03
SMPD4-218ENST00000482171 SRPK2P78362 688 aaKnown RBP14.88□□□□□ -0.03
SMPD4-218ENST00000482171 AFAP1Q8N556 730 aa14.88□□□□□ -0.03
SMPD4-218ENST00000482171 KIF15Q9NS87 1388 aa14.87□□□□□ -0.03
SMPD4-218ENST00000482171 CDK13Q14004 1512 aaKnown RBP14.87□□□□□ -0.03
SMPD4-218ENST00000482171 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.87□□□□□ -0.03
SMPD4-218ENST00000482171 BIVM-ERCC5R4GMW8 1640 aa14.87□□□□□ -0.03
SMPD4-218ENST00000482171 LAS1LQ9Y4W2 734 aaKnown RBP14.87□□□□□ -0.03
SMPD4-218ENST00000482171 CCDC144AA2RUR9 1427 aa14.86□□□□□ -0.03
SMPD4-218ENST00000482171 CFAP53Q96M91 514 aa14.85□□□□□ -0.03
SMPD4-218ENST00000482171 PCF11O94913 1555 aaKnown RBP14.84□□□□□ -0.03
SMPD4-218ENST00000482171 U2SURPO15042 1029 aaKnown RBP14.84□□□□□ -0.03
SMPD4-218ENST00000482171 ANKRD50Q9ULJ7 1429 aa14.84□□□□□ -0.03
SMPD4-218ENST00000482171 SOX12O15370 315 aa14.83□□□□□ -0.03
SMPD4-218ENST00000482171 TRAK1Q9UPV9 953 aa14.82□□□□□ -0.04
SMPD4-218ENST00000482171 KIAA0586Q9BVV6 1533 aa14.8□□□□□ -0.04
SMPD4-218ENST00000482171 USP47Q96K76 1375 aa14.8□□□□□ -0.04
SMPD4-218ENST00000482171 MORC1Q86VD1 984 aa14.8□□□□□ -0.04
SMPD4-218ENST00000482171 KTN1Q86UP2 1357 aaKnown RBP14.8□□□□□ -0.04
SMPD4-218ENST00000482171 EPRSP07814 1512 aaKnown RBP14.79□□□□□ -0.04
SMPD4-218ENST00000482171 PLB1Q6P1J6 1458 aa14.79□□□□□ -0.04
SMPD4-218ENST00000482171 TROQ12816 1431 aaPredicted RBP14.78□□□□□ -0.04
SMPD4-218ENST00000482171 SYNJ2O15056 1496 aa14.78□□□□□ -0.04
SMPD4-218ENST00000482171 IQGAP2Q13576 1575 aa14.78□□□□□ -0.04
SMPD4-218ENST00000482171 PRKRIP1Q9H875 184 aaPredicted RBP14.78□□□□□ -0.04
SMPD4-218ENST00000482171 LMOD2Q6P5Q4 547 aa14.77□□□□□ -0.04
SMPD4-218ENST00000482171 EHBP1L1Q8N3D4 1523 aa14.77□□□□□ -0.05
SMPD4-218ENST00000482171 FRAT1Q92837 279 aaPredicted RBP14.77□□□□□ -0.05
SMPD4-218ENST00000482171 PANK3Q9H999 370 aa14.75□□□□□ -0.05
SMPD4-218ENST00000482171 NBPF8Q3BBV2 869 aa14.75□□□□□ -0.05
SMPD4-218ENST00000482171 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
SMPD4-218ENST00000482171 MAPK8IP3Q9UPT6 1336 aa14.74□□□□□ -0.05
SMPD4-218ENST00000482171 ARHGAP5Q13017 1502 aa14.74□□□□□ -0.05
SMPD4-218ENST00000482171 NUDCQ9Y266 331 aa14.74□□□□□ -0.05
SMPD4-218ENST00000482171 CUL7Q14999 1698 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 GRIN2AQ12879 1464 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 FAM69CQ0P6D2 419 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 GLIPR1L2Q4G1C9 344 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 NAIPQ13075 1403 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 RALBP1Q15311 655 aa14.73□□□□□ -0.05
SMPD4-218ENST00000482171 KIF7Q2M1P5 1343 aa14.72□□□□□ -0.05
SMPD4-218ENST00000482171 WASHC2AQ641Q2 1341 aa14.72□□□□□ -0.05
SMPD4-218ENST00000482171 HECW1Q76N89 1606 aa14.72□□□□□ -0.05
SMPD4-218ENST00000482171 NUTM2FA1L443 756 aa14.72□□□□□ -0.05
SMPD4-218ENST00000482171 MIA2Q96PC5 1412 aa14.72□□□□□ -0.05
SMPD4-218ENST00000482171 ERICH6BQ5W0A0 696 aa14.71□□□□□ -0.06
SMPD4-218ENST00000482171 C9orf84Q5VXU9 1444 aa14.7□□□□□ -0.06
SMPD4-218ENST00000482171 NLRP13Q86W25 1043 aa14.7□□□□□ -0.06
SMPD4-218ENST00000482171 CCDC146Q8IYE0 955 aa14.7□□□□□ -0.06
SMPD4-218ENST00000482171 DAPK1P53355 1430 aa14.69□□□□□ -0.06
SMPD4-218ENST00000482171 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.69□□□□□ -0.06
SMPD4-218ENST00000482171 NBPF1Q3BBV0 1214 aa14.69□□□□□ -0.06
SMPD4-218ENST00000482171 SUPT6HQ7KZ85 1726 aaKnown RBP14.68□□□□□ -0.06
SMPD4-218ENST00000482171 RGS3P49796 1198 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms