RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 SOX12O15370 315 aa11.91□□□□□ -0.5
UPF3A-207ENST00000481131 SLAIN1Q8ND83 568 aa11.91□□□□□ -0.5
UPF3A-207ENST00000481131 MS4A4AQ96JQ5 239 aa11.91□□□□□ -0.5
UPF3A-207ENST00000481131 NLRP6P59044 892 aa11.89□□□□□ -0.51
UPF3A-207ENST00000481131 NBR1Q14596 966 aa11.88□□□□□ -0.51
UPF3A-207ENST00000481131 TPRNQ4KMQ1 711 aa11.87□□□□□ -0.51
UPF3A-207ENST00000481131 PCDH10Q9P2E7 1040 aa11.87□□□□□ -0.51
UPF3A-207ENST00000481131 PLSCR2Q9NRY7 297 aa11.82□□□□□ -0.52
UPF3A-207ENST00000481131 ST18O60284 1047 aa11.81□□□□□ -0.52
UPF3A-207ENST00000481131 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.81□□□□□ -0.52
UPF3A-207ENST00000481131 L3MBTL3Q96JM7 780 aaPredicted RBP11.8□□□□□ -0.52
UPF3A-207ENST00000481131 KCNV2Q8TDN2 545 aa11.79□□□□□ -0.52
UPF3A-207ENST00000481131 BOLA1Q9Y3E2 137 aa11.79□□□□□ -0.52
UPF3A-207ENST00000481131 TMEM121BQ9BXQ6 578 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-207ENST00000481131 WDR70Q9NW82 654 aa11.76□□□□□ -0.53
UPF3A-207ENST00000481131 P3H3Q8IVL6 736 aa11.75□□□□□ -0.53
UPF3A-207ENST00000481131 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
UPF3A-207ENST00000481131 C3orf67Q6ZVT6 689 aa11.73□□□□□ -0.53
UPF3A-207ENST00000481131 NCKAP5LQ9HCH0 1330 aa11.73□□□□□ -0.53
UPF3A-207ENST00000481131 TMEM92Q6UXU6 159 aa11.72□□□□□ -0.53
UPF3A-207ENST00000481131 SNPHO15079 494 aa11.69□□□□□ -0.54
UPF3A-207ENST00000481131 CDAN1Q8IWY9 1227 aa11.67□□□□□ -0.54
UPF3A-207ENST00000481131 CRISPLD2Q9H0B8 497 aa11.66□□□□□ -0.54
UPF3A-207ENST00000481131 G3V3G9 751 aa11.65□□□□□ -0.54
UPF3A-207ENST00000481131 MFSD10Q14728 455 aa11.64□□□□□ -0.55
UPF3A-207ENST00000481131 E2F4Q16254 413 aa11.64□□□□□ -0.55
UPF3A-207ENST00000481131 LARP6Q9BRS8 491 aaKnown RBP11.63□□□□□ -0.55
UPF3A-207ENST00000481131 PDE4AP27815 886 aa11.62□□□□□ -0.55
UPF3A-207ENST00000481131 ARHGEF1Q92888 912 aaKnown RBP11.61□□□□□ -0.55
UPF3A-207ENST00000481131 MARVELD3Q96A59 401 aa11.58□□□□□ -0.56
UPF3A-207ENST00000481131 HOXB3P14651 431 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-207ENST00000481131 DDX27Q96GQ7 796 aaKnown RBP11.57□□□□□ -0.56
UPF3A-207ENST00000481131 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.54□□□□□ -0.56
UPF3A-207ENST00000481131 CAMK2BQ13554 666 aa11.53□□□□□ -0.56
UPF3A-207ENST00000481131 POTEB3A0JP26 581 aa11.52□□□□□ -0.57
UPF3A-207ENST00000481131 POTEBQ6S5H4 581 aa11.52□□□□□ -0.57
UPF3A-207ENST00000481131 KIF3CO14782 793 aa11.51□□□□□ -0.57
UPF3A-207ENST00000481131 SEMA3EO15041 775 aa11.51□□□□□ -0.57
UPF3A-207ENST00000481131 LMOD2Q6P5Q4 547 aa11.51□□□□□ -0.57
UPF3A-207ENST00000481131 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-207ENST00000481131 C2orf72A6NCS6 295 aa11.5□□□□□ -0.57
UPF3A-207ENST00000481131 ARIH1Q9Y4X5 557 aaPredicted RBP11.5□□□□□ -0.57
UPF3A-207ENST00000481131 TESPA1A2RU30 521 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-207ENST00000481131 PPP1R15BQ5SWA1 713 aa11.48□□□□□ -0.57
UPF3A-207ENST00000481131 EMP3P54852 163 aa11.47□□□□□ -0.57
UPF3A-207ENST00000481131 DSG2Q14126 1118 aa11.45□□□□□ -0.58
UPF3A-207ENST00000481131 HOXB1P14653 301 aaPredicted RBP11.44□□□□□ -0.58
UPF3A-207ENST00000481131 HS3ST6Q96QI5 342 aa11.44□□□□□ -0.58
UPF3A-207ENST00000481131 EMILIN3Q9NT22 766 aa11.42□□□□□ -0.58
UPF3A-207ENST00000481131 FAM205CA6NFA0 338 aa11.41□□□□□ -0.58
UPF3A-207ENST00000481131 DOK7Q18PE1 504 aa11.41□□□□□ -0.58
UPF3A-207ENST00000481131 SPNS2Q8IVW8 549 aa11.41□□□□□ -0.58
UPF3A-207ENST00000481131 KRTAP3-3Q9BYR6 98 aa11.41□□□□□ -0.58
UPF3A-207ENST00000481131 KRTAP3-2Q9BYR7 98 aa11.41□□□□□ -0.58
UPF3A-207ENST00000481131 FOXK1P85037 733 aa11.4□□□□□ -0.58
UPF3A-207ENST00000481131 TMC2Q8TDI7 906 aa11.4□□□□□ -0.58
UPF3A-207ENST00000481131 KHSRPQ92945 711 aaKnown RBP eCLIP11.39□□□□□ -0.59
UPF3A-207ENST00000481131 TULP1O00294 542 aaPredicted RBP11.38□□□□□ -0.59
UPF3A-207ENST00000481131 GPR153Q6NV75 609 aa11.37□□□□□ -0.59
UPF3A-207ENST00000481131 DPYSL4O14531 572 aa11.36□□□□□ -0.59
UPF3A-207ENST00000481131 MMRN1Q13201 1228 aa11.36□□□□□ -0.59
UPF3A-207ENST00000481131 ZNF710Q8N1W2 664 aa11.36□□□□□ -0.59
UPF3A-207ENST00000481131 ZC3H15Q8WU90 426 aaKnown RBP11.36□□□□□ -0.59
UPF3A-207ENST00000481131 MLLT3P42568 568 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-207ENST00000481131 PLPP6Q8IY26 295 aa11.35□□□□□ -0.59
UPF3A-207ENST00000481131 ZSWIM6Q9HCJ5 1215 aa11.35□□□□□ -0.59
UPF3A-207ENST00000481131 ARSIQ5FYB1 569 aa11.34□□□□□ -0.59
UPF3A-207ENST00000481131 PDIA6Q15084 440 aa11.31□□□□□ -0.6
UPF3A-207ENST00000481131 RIMBP2O15034 1052 aa11.3□□□□□ -0.6
UPF3A-207ENST00000481131 SMYD5Q6GMV2 418 aa11.3□□□□□ -0.6
UPF3A-207ENST00000481131 ERBB3P21860 1342 aa11.28□□□□□ -0.6
UPF3A-207ENST00000481131 SPDYE16A6NNV3 312 aaPredicted RBP11.27□□□□□ -0.61
UPF3A-207ENST00000481131 RBM26Q5T8P6 1007 aaKnown RBP11.27□□□□□ -0.61
UPF3A-207ENST00000481131 PCDHGA4Q9Y5G9 962 aa11.26□□□□□ -0.61
UPF3A-207ENST00000481131 ZMYND10O75800 440 aa11.25□□□□□ -0.61
UPF3A-207ENST00000481131 SLC34A2O95436 690 aa11.25□□□□□ -0.61
UPF3A-207ENST00000481131 NUDT7P0C024 238 aa11.25□□□□□ -0.61
UPF3A-207ENST00000481131 VARS2Q5ST30 1063 aaKnown RBP11.23□□□□□ -0.61
UPF3A-207ENST00000481131 OXER1Q8TDS5 423 aa11.22□□□□□ -0.61
UPF3A-207ENST00000481131 UPF1Q92900 1129 aaKnown RBP eCLIP11.22□□□□□ -0.61
UPF3A-207ENST00000481131 SLC24A3Q9HC58 644 aa11.22□□□□□ -0.61
UPF3A-207ENST00000481131 ZNF687Q8N1G0 1237 aa11.21□□□□□ -0.61
UPF3A-207ENST00000481131 KDM4FA0A1W2PPD8 638 aa11.2□□□□□ -0.62
UPF3A-207ENST00000481131 MAP3K9P80192 1104 aa11.2□□□□□ -0.62
UPF3A-207ENST00000481131 PTCD2Q8WV60 388 aaKnown RBP11.2□□□□□ -0.62
UPF3A-207ENST00000481131 ZNF316A6NFI3 1004 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-207ENST00000481131 BRPF1P55201 1214 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-207ENST00000481131 BARGINQ6ZT62 677 aa11.18□□□□□ -0.62
UPF3A-207ENST00000481131 GPIHBP1Q8IV16 184 aa11.18□□□□□ -0.62
UPF3A-207ENST00000481131 LHX6Q9UPM6 363 aa11.18□□□□□ -0.62
UPF3A-207ENST00000481131 GRXCR2A6NFK2 248 aa11.14□□□□□ -0.63
UPF3A-207ENST00000481131 GPR37O15354 613 aa11.14□□□□□ -0.63
UPF3A-207ENST00000481131 OSBPP22059 807 aa11.12□□□□□ -0.63
UPF3A-207ENST00000481131 PTGER2P43116 358 aa11.12□□□□□ -0.63
UPF3A-207ENST00000481131 POTEEQ6S8J3 1075 aa11.11□□□□□ -0.63
UPF3A-207ENST00000481131 EVI5O60447 810 aa11.1□□□□□ -0.63
UPF3A-207ENST00000481131 PRIM1P49642 420 aaKnown RBP11.09□□□□□ -0.63
UPF3A-207ENST00000481131 TMEM132AQ24JP5 1023 aa11.09□□□□□ -0.63
UPF3A-207ENST00000481131 DDX12PQ92771 950 aa11.09□□□□□ -0.63
UPF3A-207ENST00000481131 NEUROD2Q15784 382 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms